View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15435_high_8 (Length: 244)
Name: NF15435_high_8
Description: NF15435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15435_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 10 - 121
Target Start/End: Original strand, 51310592 - 51310703
Alignment:
| Q |
10 |
agatgaagaaggtggagccggaacggtggaggagacggagaccgtgacggagggctcttactattctgtctgatattggttggctgtgtttgaaacgata |
109 |
Q |
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| T |
51310592 |
agatgaagaaggtggagccggaacggtggaggagacggagaccgtgacggagggctcttactattctgtctgatattggttggctgtgtttgaaacgata |
51310691 |
T |
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| Q |
110 |
gggacggggacg |
121 |
Q |
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| T |
51310692 |
gggacggggacg |
51310703 |
T |
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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 51310748 - 51310807
Alignment:
| Q |
172 |
aggcaacagactccatttccaaagaatgaggaacggttttgtgtgaagaatatagttttt |
231 |
Q |
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| T |
51310748 |
aggcaacagactccatttccaaagaatgaggaacggttttgtgtgaagaatatagttttt |
51310807 |
T |
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