View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15435_high_9 (Length: 235)
Name: NF15435_high_9
Description: NF15435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15435_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 34748477 - 34748259
Alignment:
| Q |
12 |
agatgaagtgtggttggggttaatgaagaaaggaagaactcacaagttctccaacggagattagtcactgttgtacaacaatgaaattttcgtgtcaata |
111 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34748477 |
agatgaagtgtggttggtgttaatggagaaaggaagaactcacaagttctccaacggagattagtcactgttgtacaacaatgaatatttcgtgtcaata |
34748378 |
T |
|
| Q |
112 |
tgatnnnnnnnnn-----------ggttaagaaaccggatgaagaaaacaagagttttcgaatagtttgatattagtgttgtaattattgatataatttt |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34748377 |
tgataaaaaaaaaaaaaaaaaaaaggttaagaaaccggatgaagaaaacaagagttttcgaatagtttgatattagtgttgtaatttttgatataatttt |
34748278 |
T |
|
| Q |
201 |
taattcaaaataatttttg |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
34748277 |
taattcaaaataatttttg |
34748259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University