View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15435_low_1 (Length: 556)

Name: NF15435_low_1
Description: NF15435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15435_low_1
NF15435_low_1
[»] chr7 (4 HSPs)
chr7 (255-542)||(32017100-32017402)
chr7 (57-227)||(32017430-32017600)
chr7 (295-339)||(27659295-27659339)
chr7 (163-223)||(5179668-5179728)
[»] chr5 (1 HSPs)
chr5 (255-339)||(37604709-37604793)
[»] chr4 (1 HSPs)
chr4 (146-223)||(23352988-23353066)
[»] chr2 (3 HSPs)
chr2 (261-316)||(25542676-25542731)
chr2 (149-191)||(3595141-3595183)
chr2 (291-339)||(3594981-3595028)


Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 255 - 542
Target Start/End: Complemental strand, 32017402 - 32017100
Alignment:
Q  255 ggggaggcgcaaacagcagaccagaaagcattaacaggcctcacaaacagcaaagacctcccttcccaggccagatagcagaaaa--------------- 339  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||                   
T  32017402 ggggaggtgcaaacagcagaccagaaagcataaaaaggcctcacaaacagcaaagacctcccttcccaggccagatagcagaaaaagcccaggcagtaaa 32017303  T
Q  340 caacactccccgcannnnnnnaagacagcagcactactacagatagcagaacagccgcataggggaaaacaccaacaaaacctgctgtgaaccaacccag 439  Q
    ||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32017302 caacactccccgcacccccccaagacagcagcactactacagatagcagaacagccgcataggggaaaaaaccaacaaaacctgctgtgaaccaacccag 32017203  T
Q  440 agagcacagctcgaaaaacacagaccctccccccttaaatactaccttcttaagcaatcttcaggatcccaattccactagtaaaataggcaaggcaaaa 539  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32017202 agagcacagctcgaaaaacacagaccctccccccttaaatactaccttcttaagcaatcttcaggatcccaattccactcgtaaaataggcaaggcaaaa 32017103  T
Q  540 cct 542  Q
    |||    
T  32017102 cct 32017100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 57 - 227
Target Start/End: Complemental strand, 32017600 - 32017430
Alignment:
Q  57 aaaggaaaagcttaagatattaagtagaaaagataaaataatagtttgttattaacattgtttttatacggaaaattttattacgccaaacctgcacaag 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  32017600 aaaggaaaagcttaagatattaagtagaaaagataaaataatagtttgttattaacattgtttttaaacggaaaattttatcacgccaaacctgcacaag 32017501  T
Q  157 aagtgtaaaggccagcaaaaacaacaatacaaaaataaatcaggtgttgtatataggcggaacaccctaac 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32017500 aagtgtaaaggccagcaaaaacaacaatacaaaaataaatcaggtgttgtatataggcggaacaccctaac 32017430  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 27659339 - 27659295
Alignment:
Q  295 tcacaaacagcaaagacctcccttcccaggccagatagcagaaaa 339  Q
    |||||||||||| |||||||||||| |||||||||||||||||||    
T  27659339 tcacaaacagcacagacctcccttctcaggccagatagcagaaaa 27659295  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 5179728 - 5179668
Alignment:
Q  163 aaaggccagcaaaaacaacaatacaaaaataaatcaggtgttgtatataggcggaacaccc 223  Q
    |||||||||||||||||||| |||||||  |||   ||||  |||||||||||||||||||    
T  5179728 aaaggccagcaaaaacaacagtacaaaatcaaacagggtgccgtatataggcggaacaccc 5179668  T

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Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 255 - 339
Target Start/End: Original strand, 37604709 - 37604793
Alignment:
Q  255 ggggaggcgcaaacagcagaccagaaagcattaacaggcctcacaaacagcaaagacctcccttcccaggccagatagcagaaaa 339  Q
    ||||||||||||||||||||||||||| ||  |||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  37604709 ggggaggcgcaaacagcagaccagaaatcacaaacaggcctcacaaacagcacagacctcccttcccaagccagatagcagaaaa 37604793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 23353066 - 23352988
Alignment:
Q  146 acctgcacaagaagtgtaaaggccagcaaaaacaacaatacaaaaa-taaatcaggtgttgtatataggcggaacaccc 223  Q
    |||||||||||||| | |||||||| |||||||||||||| |||||  ||||| ||||  |||||||||||||||||||    
T  23353066 acctgcacaagaagcgcaaaggccatcaaaaacaacaatagaaaaacaaaatcgggtgccgtatataggcggaacaccc 23352988  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 261 - 316
Target Start/End: Complemental strand, 25542731 - 25542676
Alignment:
Q  261 gcgcaaacagcagaccagaaagcattaacaggcctcacaaacagcaaagacctccc 316  Q
    ||||||||||||||||||||| ||  |||||||||||||||||| |||||| ||||    
T  25542731 gcgcaaacagcagaccagaaaacacaaacaggcctcacaaacagaaaagacttccc 25542676  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 191
Target Start/End: Complemental strand, 3595183 - 3595141
Alignment:
Q  149 tgcacaagaagtgtaaaggccagcaaaaacaacaatacaaaaa 191  Q
    ||||||||||| | ||||||||||||||||||||||| |||||    
T  3595183 tgcacaagaagcgcaaaggccagcaaaaacaacaatataaaaa 3595141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 3595028 - 3594981
Alignment:
Q  291 ggcctcacaaacagcaaagacctcccttcccaggccagatagcagaaaa 339  Q
    |||||||||||||| |||||| |||| |||||| |||||||||||||||    
T  3595028 ggcctcacaaacagaaaagacttccc-tcccagaccagatagcagaaaa 3594981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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