View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15435_low_13 (Length: 219)
Name: NF15435_low_13
Description: NF15435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15435_low_13 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 27815328 - 27815530
Alignment:
| Q |
17 |
aggcttgatactatgattagcttatttttcatttatgtgagcatctcacatactatgaagtgtgttaataatgtagagatatgttaattattttatgttt |
116 |
Q |
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| T |
27815328 |
aggcttgatactatgattagcttatttttcatttatgtgagcatctcacatactatgaagtgtgttaataatgtagagatatgttaattattttatgttt |
27815427 |
T |
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| Q |
117 |
ataactctttttnnnnnnnntaacaattatggtttgttctaatcctctcttattctattttaatccatggactagctactactgaaaagtaacattttct |
216 |
Q |
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| T |
27815428 |
ataactctttttctaaaaaataacaattacggtttgttctaatcctctcttattctattttaatccatggactagctactactgaaaagtaacattttct |
27815527 |
T |
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| Q |
217 |
ttt |
219 |
Q |
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||| |
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| T |
27815528 |
ttt |
27815530 |
T |
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Target: chr8; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 27817015 - 27817213
Alignment:
| Q |
17 |
aggcttgatactatgattagcttatttttcatttatgtgagcatctcacatactatgaagtgt-gttaataatgtagagatatgttaattattttatgtt |
115 |
Q |
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|||||||||||||| ||| ||||||||||||||||||| |||||||| |||| ||||| || || || || | ||||||||||| ||||||| |
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| T |
27817015 |
aggcttgatactataattttcttatttttcatttatgtgtgcatctcagatacaatgaattgaagtgtattatct-----tatgttaattagcttatgtt |
27817109 |
T |
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| Q |
116 |
tataactctttttnnnnnnnntaacaattatggtttgttctaatcctctcttattctattttaatccatggactagctactactgaaaagtaacattttc |
215 |
Q |
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||||||| ||||| ||||||||| ||| ||||||||||||||||||||| |||| ||||||| | ||||||||| |||||||||| ||||| |
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| T |
27817110 |
tataactatttttctaaaaaataacaattacggtgtgttctaatcctctcttattcgctttttatccatgtaatagctactattgaaaagtaatattttt |
27817209 |
T |
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