View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15435_low_3 (Length: 534)
Name: NF15435_low_3
Description: NF15435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15435_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 24 - 524
Target Start/End: Original strand, 51514499 - 51514999
Alignment:
| Q |
24 |
cattcggtaagctcttcaatttcgcattctccctcaattcaattcgattccattccattcagtttctgattgtaatttgggatttaggnnnnnnngttgc |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
51514499 |
cattcggtaagctcttcaatttcgcattctccctcaattcaattcgattccattccattcagtttctgattgtaatttgggatttaggtttttttgttgc |
51514598 |
T |
|
| Q |
124 |
gtcgccgttgtcaacatgtcggatcgattgacacgtattgccatcgttagcaacgacagatgcaaacccaaaaagtgtcgtcaagaatgtaagaagagtt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51514599 |
gtcgccgttgtcaacatgtcggatcgattgacacgtattgccatcgttagcaacgacagatgcaaacccaaaaagtgtcgtcaagaatgtaagaagagtt |
51514698 |
T |
|
| Q |
224 |
gtcctgtcgtcagaaccggttagtaacatcacatcccnnnnnnncagatttcatcttcattttgtgttagtcttagtatgttaattaatcaatcaatcga |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51514699 |
gtcctgtcgtcagaaccggttagtaacatcacatccctttttttcagatttcatcttcattttgtgttagtcttagtatgttaattaatcaatcaatcga |
51514798 |
T |
|
| Q |
324 |
caaaccatcattttaatttaannnnnnnataggaagattatgtgttgaggttacctctgcttcgaaaattgcttacatatctgaggaattgtgcattgga |
423 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51514799 |
caaaccatcattttaatttaattttattataggaagattatgtgttgaggttacctctgcttcgaaaattgcttacatatctgaggaattgtgcattgga |
51514898 |
T |
|
| Q |
424 |
tgtggtatctgtgttaaggtattattcacttttttaatgatgctcgctttgtgtatctgttcatatctttgagtgttaatttatgggtttatgtgatgat |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51514899 |
tgtggtatctgtgttaaggtattattcacttttttaatgatgctcgctttgtgtgtctgttcatatctttgagtgttaatttatgggtttatgtgatgat |
51514998 |
T |
|
| Q |
524 |
g |
524 |
Q |
| |
|
| |
|
|
| T |
51514999 |
g |
51514999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 148 - 242
Target Start/End: Original strand, 7999643 - 7999737
Alignment:
| Q |
148 |
cgattgacacgtattgccatcgttagcaacgacagatgcaaacccaaaaagtgtcgtcaagaatgtaagaagagttgtcctgtcgtcagaaccgg |
242 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||| ||||||||| ||||||||||||||||| || ||||||||||||||||||||| ||||||| |
|
|
| T |
7999643 |
cgattgacgcgtattgccatcgttaacaacgacaaatgcaaaccgaaaaagtgtcgtcaagagtgcaagaagagttgtcctgtcgtcggaaccgg |
7999737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 355 - 449
Target Start/End: Original strand, 7999736 - 7999830
Alignment:
| Q |
355 |
ggaagattatgtgttgaggttacctctgcttcgaaaattgcttacatatctgaggaattgtgcattggatgtggtatctgtgttaaggtattatt |
449 |
Q |
| |
|
|||| |||||||||||||||||| ||||| || || ||||||||||| || |||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
7999736 |
ggaaaattatgtgttgaggttacttctgcgtccaagattgcttacatttccgaggaattgtgcattggatgcggtatttgtgttaaggtattatt |
7999830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 363 - 449
Target Start/End: Complemental strand, 7908832 - 7908746
Alignment:
| Q |
363 |
atgtgttgaggttacctctgcttcgaaaattgcttacatatctgaggaattgtgcattggatgtggtatctgtgttaaggtattatt |
449 |
Q |
| |
|
||||||||||||||| ||| || || ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
7908832 |
atgtgttgaggttactcctgagtccaagattgcttacatatctgaggaattgtgcattggatgccgtatgtgtgttaaggtattatt |
7908746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 7999565 - 7999614
Alignment:
| Q |
62 |
tcaattcgattccattccattcagtttctgattgtaatttgggatttagg |
111 |
Q |
| |
|
||||||| |||| |||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
7999565 |
tcaattcaattcaattcaattcattttctgattgtaatttgggatttagg |
7999614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 7909003 - 7908962
Alignment:
| Q |
70 |
attccattccattcagtttctgattgtaatttgggatttagg |
111 |
Q |
| |
|
|||| |||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
7909003 |
attcaattcgattcattttctgattgtaatttgggatttagg |
7908962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 7909038 - 7908990
Alignment:
| Q |
25 |
attcggtaagctcttcaatttcgcattctccctcaattcaattcgattc |
73 |
Q |
| |
|
||||||||||||||||||||| | ||| | |||||||||||||||||| |
|
|
| T |
7909038 |
attcggtaagctcttcaattttgtatttactctcaattcaattcgattc |
7908990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 352 - 446
Target Start/End: Complemental strand, 1304677 - 1304583
Alignment:
| Q |
352 |
ataggaagattatgtgttgaggttacctctgcttcgaaaattgcttacatatctgaggaattgtgcattggatgtggtatctgtgttaaggtatt |
446 |
Q |
| |
|
||||||| ||| ||| ||||||||| ||||| ||||| ||||||||| |||| ||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
1304677 |
ataggaaaattgtgtattgaggttaattctgcatcgaagattgcttacctatccgaggaattgtgcaatggatgtggtatttgtgttaaggtatt |
1304583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 1304840 - 1304775
Alignment:
| Q |
178 |
gacagatgcaaacccaaaaagtgtcgtcaagaatgtaagaagagttgtcctgtcgtcagaaccggt |
243 |
Q |
| |
|
||||||||||| || ||||||||||| || || |||||||||||||| |||||||||| ||||||| |
|
|
| T |
1304840 |
gacagatgcaagccgaaaaagtgtcgacaggagtgtaagaagagttgccctgtcgtcaaaaccggt |
1304775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University