View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15435_low_5 (Length: 511)
Name: NF15435_low_5
Description: NF15435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15435_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 6e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 328 - 501
Target Start/End: Original strand, 5891547 - 5891720
Alignment:
| Q |
328 |
gaaggatgagaagttggaactaaatttagaaaagaaagagtcaatcaagggtgcatgtacagttagtggagcctacctttgtcacattaacaaaacaaaa |
427 |
Q |
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| T |
5891547 |
gaaggatgaaaagttggaactaaatttagaaaagaaagagtcaatcaaggttgcatgtacagttagtggagcctaccttggtcacattaacaaaacaaaa |
5891646 |
T |
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| Q |
428 |
atgcttgctcttacctcattccacatcttttgttgtaaaaaacactggctgcaatgtgaaaagtcaaacctatg |
501 |
Q |
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| T |
5891647 |
atgtttgctcttacctcattccacatcttttgttgtaaaaaacactggcttttacatgaaaagtcaaacctatg |
5891720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 5891238 - 5891345
Alignment:
| Q |
19 |
aatccaaactttgcaaaccagaaattttttggctataataattatgaattttttgcaacatggacatgcaaagagtggacaagggaaggaattgaaaaga |
118 |
Q |
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| T |
5891238 |
aatccaaactttgcaaaccagaaattttttggctataataattatgaattttttgcaacatggacatgcaaagagtggacaagggaaggaattgaaaaga |
5891337 |
T |
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| Q |
119 |
caaagaac |
126 |
Q |
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| T |
5891338 |
caaagaac |
5891345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 194 - 268
Target Start/End: Original strand, 5891413 - 5891487
Alignment:
| Q |
194 |
tgaaataacaaaagtaggaagagaaaggaacataccctgattaagcaggaagaaaattgatgattgatagtaagc |
268 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5891413 |
tgaaataacaaaagtaggaaaagaaaggaacataccctgattaagcaggaacaaaattgatgattgatagtaagc |
5891487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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