View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15435_low_6 (Length: 427)
Name: NF15435_low_6
Description: NF15435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15435_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 24697972 - 24698391
Alignment:
| Q |
1 |
cagcagttcaattgctggaccaggaaagaag---ctgcatactactgactctggtacttcatataatcccttttctatcagaagctctaacagaaaacaa |
97 |
Q |
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||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24697972 |
cagcagttcaattgctggaccaggaaagaaggggctgtctactactgactctggtacttcatataatcccttttctatcagaagctctaacagaaaacaa |
24698071 |
T |
|
| Q |
98 |
ccgtccactaacataatttgtgtgagctcttgtgtttcaatgttgttgatgtcgggcccgtaatttgctcgaatcacatcatctatttcccaaagtgctt |
197 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24698072 |
ccgtccactaacataatttgtgtgagctcttgtgtttcaatgttgttgatgtcgggcccgtaatttgctcgaatcacatcatctatttcccaaagtgctt |
24698171 |
T |
|
| Q |
198 |
tgcagcatgattccaatgtttcataagcactgcggtcgcgtagtattcctcgttgaaagagatgcttcatgcaccttattttgatatcttccatctgcaa |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24698172 |
tgcagcatgattccaatgtttcataagcactgcggtcgcgtagtattcctcgttgaaagagatgcttcatgcaccttattttgatatcttccatctgcaa |
24698271 |
T |
|
| Q |
298 |
taggtcttcgttgcttcctttgaatcggggtccgattgacaccacccttggcatgtatgcatcaacgtttggttttttcagtctttctggaaccaagaaa |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
24698272 |
taggtcttcgttgcttcctttgaatcggggtccgattgacaccacccttggcatgtatgcatccacgtttggttttttaagtctttctggaaccaagaaa |
24698371 |
T |
|
| Q |
398 |
atgctacgtgattgatgatg |
417 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
24698372 |
atgctacgtgattgatgatg |
24698391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 247 - 390
Target Start/End: Complemental strand, 24536637 - 24536494
Alignment:
| Q |
247 |
tcgttgaaagagatgcttcatgcaccttattttgatatcttccatctgcaataggtcttcgttgcttcctttgaatcggggtccgattgacaccaccctt |
346 |
Q |
| |
|
|||| |||| |||||||||||||||| |||||||| |||||||| ||||||||||||| ||||||| |||||||| |||||||| |||||||| ||| |
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| T |
24536637 |
tcgtagaaatagatgcttcatgcaccgcattttgatgtcttccatgagcaataggtcttctctgcttcccttgaatcgtggtccgatggacaccactctt |
24536538 |
T |
|
| Q |
347 |
ggcatgtatgcatcaacgtttggttttttcagtctttctggaac |
390 |
Q |
| |
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|||| ||||||||| | || | |||||| |||||||||||||| |
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| T |
24536537 |
ggcacgtatgcatcttccttcgattttttaagtctttctggaac |
24536494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 251 - 412
Target Start/End: Original strand, 24897533 - 24897694
Alignment:
| Q |
251 |
tgaaagagatgcttcatgcaccttattttgatatcttccatctgcaataggtcttcgttgcttcctttgaatcggggtccgattgacaccacccttggca |
350 |
Q |
| |
|
|||||||||| | ||||||||||||||||||| |||||||| | | || |||||| ||||||| |||||||||||||| || ||||| ||||||| |
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|
| T |
24897533 |
tgaaagagatacatcatgcaccttattttgatctcttccatgagaagtaagtcttccctgcttcccttgaatcggggtccaatggacactgcccttggtg |
24897632 |
T |
|
| Q |
351 |
tgtatgcatcaacgtttggttttttcagtctttctggaaccaagaaaatgctacgtgattga |
412 |
Q |
| |
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| |||||||| |||||| |||||| ||| ||| ||||| | | ||||||||||||||||| |
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|
| T |
24897633 |
tatatgcatcctcgtttgattttttaagtacttcaggaacaatggaaatgctacgtgattga |
24897694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 309 - 412
Target Start/End: Original strand, 24864506 - 24864609
Alignment:
| Q |
309 |
tgcttcctttgaatcggggtccgattgacaccacccttggcatgtatgcatcaacgtttggttttttcagtctttctggaaccaagaaaatgctacgtga |
408 |
Q |
| |
|
||||||||||||||| ||||| || |||||||||||||||||||||||||| |||| |||||| || ||||||||||||| | ||||||||| ||| |
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|
| T |
24864506 |
tgcttcctttgaatcttggtcctatggacaccacccttggcatgtatgcatcctcgttcaattttttaagactttctggaaccacggaaatgctacatga |
24864605 |
T |
|
| Q |
409 |
ttga |
412 |
Q |
| |
|
|||| |
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|
| T |
24864606 |
ttga |
24864609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 251 - 412
Target Start/End: Original strand, 24856254 - 24856415
Alignment:
| Q |
251 |
tgaaagagatgcttcatgcaccttattttgatatcttccatctgcaataggtcttcgttgcttcctttgaatcggggtccgattgacaccacccttggca |
350 |
Q |
| |
|
|||||||||| | ||||||||||||||||||| |||||||| | || | ||| | ||||| |||||||||||||| ||||||||||||||||| |
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| T |
24856254 |
tgaaagagatacatcatgcaccttattttgatctcttccatgataagtaaggtttcttcgcttctcttgaatcggggtcctattgacaccacccttggtg |
24856353 |
T |
|
| Q |
351 |
tgtatgcatcaacgtttggttttttcagtctttctggaaccaagaaaatgctacgtgattga |
412 |
Q |
| |
|
|||||||||| |||||| |||||| ||| ||| ||||| | ||||||||||||||||| |
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|
| T |
24856354 |
tgtatgcatcctcgtttgattttttaagtaattcaggaacaatcgaaatgctacgtgattga |
24856415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 24536831 - 24536771
Alignment:
| Q |
56 |
tcatataatcccttttctatcagaagctctaacagaaaacaaccgtccactaacataattt |
116 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||| |
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|
| T |
24536831 |
tcatataatcccttcgatatcagaagctctaacagaaataaactgtccactaacataattt |
24536771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 24898994 - 24898949
Alignment:
| Q |
309 |
tgcttcctttgaatcggggtccgattgacaccacccttggcatgta |
354 |
Q |
| |
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||||||||||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
24898994 |
tgcttcctttgaatcttggtccgattgataccacccttggcatgta |
24898949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 116
Target Start/End: Original strand, 24897365 - 24897404
Alignment:
| Q |
77 |
agaagctctaacagaaaacaaccgtccactaacataattt |
116 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||| |
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|
| T |
24897365 |
agaagctctaacagaaaacaaccatctactaacataattt |
24897404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 24827674 - 24827728
Alignment:
| Q |
62 |
aatcccttttctatcagaagctctaacagaaaacaaccgtccactaacataattt |
116 |
Q |
| |
|
||||||||| ||| |||||||| ||||||||||| || |||||||||||||||| |
|
|
| T |
24827674 |
aatccctttgatatgagaagctccaacagaaaacatccatccactaacataattt |
24827728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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