View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15435_low_8 (Length: 258)
Name: NF15435_low_8
Description: NF15435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15435_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 254
Target Start/End: Complemental strand, 34748755 - 34748512
Alignment:
| Q |
10 |
cagagagagatgatgtagagaatgattgctgcaattttcaattaggaataagataccaatttgaaatttaatggttgacaaaagttcttatagcagtttg |
109 |
Q |
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| T |
34748755 |
cagagagaggtgatgtagagaatgattgctgcaattttcaattaggaataagataccaatttgaaatttaatggttgacaaaagttcctatagcagtttg |
34748656 |
T |
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| Q |
110 |
ggaaaatctgggatttggatatacaaacacaaataaatattcaagcccgtcatttctaatagatcatttctctatagcaccttgaagaaataaaaaagtt |
209 |
Q |
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| T |
34748655 |
ggaaaatctgggatttggatatacaaacacaaataaatattcaagcccgtcatttctaatagatcatttctctatagcaccttgaagaaataaaata-tt |
34748557 |
T |
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| Q |
210 |
aagagatttctggcaatgaggacacgagagaaagaacagggacct |
254 |
Q |
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| T |
34748556 |
aagagatttctggcaatgaggacacgagagaaagaatagtgacct |
34748512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 122 - 192
Target Start/End: Complemental strand, 34753739 - 34753669
Alignment:
| Q |
122 |
atttggatatacaaacacaaataaatattcaagcccgtcatttctaatagatcatttctctatagcacctt |
192 |
Q |
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| T |
34753739 |
atttagatatacaaacacaaataaatattcaagcccgtcatttctaatagatcatttctctatatcacctt |
34753669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 34753781 - 34753736
Alignment:
| Q |
26 |
agagaatgattgctgcaattttcaattaggaataagataccaattt |
71 |
Q |
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| T |
34753781 |
agagaatgattgctgcaattttctattagtaatttgataccaattt |
34753736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 195
Target Start/End: Original strand, 33088742 - 33088836
Alignment:
| Q |
100 |
tagcagtttgggaaaatctgggatttggatatacaaacacaaataaatattcaagcccgtcatttctaatagatcatttctctatagcaccttgaa |
195 |
Q |
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| T |
33088742 |
tagcagtttgggaaaatatgggatttaggtatacaaatacaaat-aatatttaagtcagccatttccaatagatcatttccctatcgccccttgaa |
33088836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 33088635 - 33088684
Alignment:
| Q |
11 |
agagagagatgatgtagagaa--tgattgctgcaattttcaattaggaat |
58 |
Q |
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| T |
33088635 |
agagagagatgatgtagagaaaatgattgctgcaattttcaattaggaat |
33088684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 17277294 - 17277245
Alignment:
| Q |
11 |
agagagagatgatgtagagaa--tgattgctgcaattttcaattaggaat |
58 |
Q |
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| T |
17277294 |
agagagagatgatgtagagaaaatgattgctgcaattttcaattaggaat |
17277245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 195
Target Start/End: Complemental strand, 17277187 - 17277093
Alignment:
| Q |
100 |
tagcagtttgggaaaatctgggatttggatatacaaacacaaataaatattcaagcccgtcatttctaatagatcatttctctatagcaccttgaa |
195 |
Q |
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| T |
17277187 |
tagcagtttgggaaaatatgggatttaggtatacaaatacagat-aatatttaagtcagccatttccaatagatcatttccctatcgccccttgaa |
17277093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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