View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15436_low_1 (Length: 735)
Name: NF15436_low_1
Description: NF15436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15436_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 612; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 1 - 719
Target Start/End: Complemental strand, 2021635 - 2020917
Alignment:
| Q |
1 |
attctacagagaaaaatcaattatttcaaatttagataatgcaagtgacagaaatgtgcagacaatggcacaaacactaaacaagattagcggtaaaaag |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
2021635 |
attctacagagaaaaatcaattatttcaaatttagataatgcaagtgacagaaatgtacagacaatggcacaaacactaaacaagattagcggtaaatag |
2021536 |
T |
|
| Q |
101 |
ataatcagtttttcagataataattgcttccctcacctgcagaacaaaaataaaatagagacaattaaactactgtttagaggacagatccaaggataac |
200 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2021535 |
ataatcagtttttcagataataatttcttccctcacctgcagaacaaaaaaaaaatagagacaattaaactactgtttagaggacagatccaaggataac |
2021436 |
T |
|
| Q |
201 |
cattcatcaatgttacnnnnnnntttgttccaatgatttcaaaatgttacacaatgcaacagcaattgattgaaaacgtgaaaagtatatagtattaaca |
300 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2021435 |
cattcatcaatgttacaaaaaaatttgttccaatgatttcaaaatgttacacaatgcaacagcaattgattgaaaacttgaaaagtatatagtattaaca |
2021336 |
T |
|
| Q |
301 |
atttcatattcaaatttactcaactatggtcattccctgttaacccgtccaataagtattgtagcataagcatgctaaaaatcatgcatggaccttgaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2021335 |
atttcatattcaaatttactcaactatggtcattccctgttaacccgtccaataagtattgtagcataagcatgctaaaaatcatgcatggaccttgaaa |
2021236 |
T |
|
| Q |
401 |
atattcggtagtgattcggatgaataacattcaactgaaaattaacgagaggcatttgcctattatttgtcagaaattgaaaagaattgagcgaagttgc |
500 |
Q |
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||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2021235 |
atatttggtagtgattcggatgaatcacattcaactgaaaattaacgagaggcatttgcctattatttgtcagaaattgaacagaattgagcgaagttgt |
2021136 |
T |
|
| Q |
501 |
atgcttaaatgattaaannnnnnnaagttgaacagaaccgcgagatttgcttcatgannnnnnnacatcttccattcttggatagaattgcatctataga |
600 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2021135 |
atgcttaaatgattaaatttttttaagttgaacagaaccgcgagatgtgcttcatgatttttttacatcttccattcttggatagaattgcatctataga |
2021036 |
T |
|
| Q |
601 |
acaaacaaaagaaatcttcaataaaggttgtcaatttatggattgattattcatttcttaattttcttttgaaatgcaacatgtaaaaatactatttaaa |
700 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2021035 |
acaaacaaaagaaatcttcaataaaggttctcaatttatggattgattattcatttcttaattttcttttgaaatgcaacatgtaaaaatactatttaaa |
2020936 |
T |
|
| Q |
701 |
taacctctgacacagtatt |
719 |
Q |
| |
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||||||||||||||||||| |
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| T |
2020935 |
taacctctgacacagtatt |
2020917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 349 - 719
Target Start/End: Complemental strand, 2018731 - 2018355
Alignment:
| Q |
349 |
ccaataagtattgtagcataagcatgctaaaaatcatgcatggaccttgaaaatattcggtagtgattcggatgaataacattcaactgaaaattaacga |
448 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||| ||||||||||| || |
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| T |
2018731 |
ccaataagtattgtagcataagcatgctaaaaatcatgcatgggccttgaaaatatttggtagtgattcggatgaacaacattcatctgaaaattaatga |
2018632 |
T |
|
| Q |
449 |
gaggcatttgcctattatttgtcagaaattgaaaagaattgagcgaagttgcatgcttaaatgattaaannnnnnnaagttgaacagaaccgcgagattt |
548 |
Q |
| |
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||| ||||||| |||||||||||||||||| || |||||| || ||||||| ||||||||||| || || ||||||||||||||| ||||| | |
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| T |
2018631 |
gagacatttgcttattatttgtcagaaatttaacagaattcagtgaagttgtatgcttaaatgctttaatttttcaaagttgaacagaaccacgagacat |
2018532 |
T |
|
| Q |
549 |
gcttca---tgannnnnnnacatcttccattcttggatagaattgcatctatagaacaaacaaaagaaatcttcaataaaggttgtcaatttatggattg |
645 |
Q |
| |
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|||||| | || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| | |
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| T |
2018531 |
gcttcattttttttctttcacttcttccattattggatagaattgcatctatagaacaaacaaaagaaatcttcaatgaaggttgtcaagatatggatcg |
2018432 |
T |
|
| Q |
646 |
attattcatttcttaattttcttttgaaatgca---acatgtaaaaatactatttaaataacctctgacacagtatt |
719 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||| |||| |
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| T |
2018431 |
gttattcatttcttaattttcttttgaaatgcaacgacaggtaaaaatactatttaaataacctctgatacaatatt |
2018355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 1990073 - 1989934
Alignment:
| Q |
1 |
attctacagagaaaaatcaattatttcaaatttagataatgcaagtgacagaaatgtgcagacaatggcacaaacactaaacaagattagcggtaaaaag |
100 |
Q |
| |
|
|||||||| || |||| |||||| |||||||||||||| ||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1990073 |
attctacaaaggaaaagcaattacttcaaatttagatagtgcaagtgacagagatgttcagacaatggcacaaacac--aacaagattagcggtaaaaag |
1989976 |
T |
|
| Q |
101 |
ataatcagtttttcagataataattgcttccctcacctgcagaa |
144 |
Q |
| |
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|||||| ||| ||||||||| ||| ||||| ||||||||||| |
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|
| T |
1989975 |
ataatc--tttgtcagataattatttattcccacacctgcagaa |
1989934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 224 - 514
Target Start/End: Complemental strand, 1989744 - 1989451
Alignment:
| Q |
224 |
tttgttccaatgatttcaaaatgttacacaatgcaacagcaattgat-tgaaaacgtgaaaagtatatagtattaacaatttcatattcaaat--ttact |
320 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||| || ||| ||||| | ||||||||| | ||| | ||||| |||||||||| |||| |
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| T |
1989744 |
tttgttccaattatttcaaaatgttacacaatgcaacagtaaaagatcataaaacttaaaaagtatacaatat--ataatttaatattcaaataaatact |
1989647 |
T |
|
| Q |
321 |
caactatggtcattccctgttaacccgtccaataagtattgtagcataagc-atgctaaaaatcatgcatggaccttgaaaatattcggtagtgattcgg |
419 |
Q |
| |
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||||| | ||||||||| | || | ||||| ||| | | ||| | || | | ||||||||| ||||||||| |||||||||||| |||||||||| | |
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|
| T |
1989646 |
aaactaagatcattccctcctcactcatccaagaagcaatttaggacaaacaaagctaaaaataatgcatggaacttgaaaatatttagtagtgattcag |
1989547 |
T |
|
| Q |
420 |
atgaataacattcaactgaaaattaacgagaggcatttgcctattatttgtcagaaattgaaaagaa--ttgagcgaagttgcatgcttaaatgatt |
514 |
Q |
| |
|
||||| |||||||| ||||||||||| || ||||||||||||||||| ||| |||||||| |||| ||||||||||||| ||||| |||||||| |
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|
| T |
1989546 |
atgaacaacattcatctgaaaattaatga-ttgcatttgcctattatttctcaaaaattgaatagaattttgagcgaagttgtatgctaaaatgatt |
1989451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 621 - 681
Target Start/End: Complemental strand, 1989354 - 1989293
Alignment:
| Q |
621 |
ataaaggttgtcaat-ttatggattgattattcatttcttaattttcttttgaaatgcaaca |
681 |
Q |
| |
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|||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
1989354 |
ataaaggttgtcaaagttatggattgattattaatttcttaattttcttttcaaatgcaaca |
1989293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 2018820 - 2018755
Alignment:
| Q |
224 |
tttgttccaatgatttcaaaatgttacacaatgcaacagcaattgattg-aaaacgtgaaaagtat |
288 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||| ||||| |||| | ||||| |||||||||| |
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|
| T |
2018820 |
tttgttccaattatttcaaaatgttacagaatgcaagagcaaatgatcgaaaaacatgaaaagtat |
2018755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 2019003 - 2018942
Alignment:
| Q |
1 |
attctacagagaaaaatcaattatttcaaatttagataatgcaagtgacagaaatgtgcaga |
62 |
Q |
| |
|
|||||||||| |||| ||||||||||||||| ||||||||||| ||||||| |||| |||| |
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|
| T |
2019003 |
attctacagaagaaaagcaattatttcaaattgagataatgcaactgacagagatgttcaga |
2018942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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