View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15436_low_2 (Length: 502)
Name: NF15436_low_2
Description: NF15436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15436_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 2 - 488
Target Start/End: Complemental strand, 656397 - 655910
Alignment:
| Q |
2 |
gaataaagctagatgaaaaaagcaaaacacacatttttcttggtgtgaggaaggagtccaaagcatacaaactctttgatcctattaccaagaaaataac |
101 |
Q |
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| T |
656397 |
gaataaagctagatgacaaaagcaaaacacacatttttcttggtgtgagcaaggagtccaaagcatacaaactctttgatcctattaccaagaaaataac |
656298 |
T |
|
| Q |
102 |
aatcagcaaagatgtaaaatttgaagaaaatgcatgctggaaatgggaacaaagtaaaggagaagcgcaatcagatgtgctggactgggaggataaaaat |
201 |
Q |
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| T |
656297 |
aatcaacagagatgtaaaatttgaagaaaatgcatgctggaaatgggaacaaagcaaaggagaagcacaatcagatgtgttggactgggaagataaaaat |
656198 |
T |
|
| Q |
202 |
tcagataccaacaaagaattagagttagaagaagactctgattctaatacaagtaacacaatctcgcaaacaggaggaaactcctccgcaacttcatcag |
301 |
Q |
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| T |
656197 |
tcagatgccaacaaagagttagagttagaagaagactctgattctaatacaagtaacacaatctcgcaaacaggaggaaactcctccgcaacttcatcag |
656098 |
T |
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| Q |
302 |
atggaagcgaaccaaactcgcctacatgcagatctcgaagagctcctacatggatgtcagaatacacaaccagagaaggactttcagaggaggaagaaac |
401 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
656097 |
gtggaagcgaaccaaactcgcctacaggcagatctcgaagagctcctgcatggatgtcagaatacacaaccggagaaggactttcagaggaggaagaagc |
655998 |
T |
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| Q |
402 |
aatgatggtaataacagaagaagatccagtcacatacaatgaagctgcgaaag-nnnnnnnntggagagatgcgatggctaaagagat |
488 |
Q |
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| T |
655997 |
aatgatgataataacagaagaagatccagtcacatacaatgaagctgcgaaagaaaaaaaaatggagagatgcgatggctaaagagat |
655910 |
T |
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