View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15436_low_3 (Length: 484)
Name: NF15436_low_3
Description: NF15436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15436_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 19 - 479
Target Start/End: Complemental strand, 55641939 - 55641478
Alignment:
| Q |
19 |
catacaacattaatatatatgcttttatgcaaatgttaggagaatttgaaaattctctaaccccagaaaaagctataccgtataacttaaggattcaacg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
55641939 |
catacaacattaatatatatgcttttatgcaaatgttaggagaatttgaaaattctctaaccccagaaaaagctataccatatagcttaaggattcaacg |
55641840 |
T |
|
| Q |
119 |
acacaaaatatcaaacctcatgacagcaacatggtttggttgctatctat--gtccatattctgttagatggtgtgtccatacatttcattacatactct |
216 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
55641839 |
acacaaaatatcaaacctcatggcagcaacatggtttggttgctatctatatgtccatattctgttagctggtgtgtccatacatttcattacatactct |
55641740 |
T |
|
| Q |
217 |
tatgaatcacaaagcttttcccccttcccatacgtttagtgcgcaacgtgtaatgttacataatcaagcttataaggttttcnnnnnnnactcaatcact |
316 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
55641739 |
tat-aatcacaaagcttttcccccttcccatacgtttagtgcgcaacgtgtaatgttacataatcaagcttacaaggttttctttttttactcaatcact |
55641641 |
T |
|
| Q |
317 |
gaatcacaagcttataagctgaatattgtgaaaacaattaatgcacactaattgtttcaaataataagtaaatcatagatatcattttattgggcatgct |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55641640 |
gaatcacaagcttataagctgaatattgtgaaaacaattcatgcacactaattgtttcaaataataagtaaatcatagatatcattttattgggcatgct |
55641541 |
T |
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| Q |
417 |
tatcatatcttggaagctaggtacagaagtaagagatcaattaattgctatagtattatctac |
479 |
Q |
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| T |
55641540 |
tatcatatcttggaagctaggtacagaagtaagagatcaattaattgctatagtattatctac |
55641478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 479
Target Start/End: Complemental strand, 42662298 - 42661839
Alignment:
| Q |
19 |
catacaacattaatatatatgcttttatgcaaatgttaggagaatttgaaaattctctaaccccagaaaaagctataccgtataacttaaggattcaacg |
118 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
42662298 |
catacaacattaatatatattcttttatgcaaatgttaggagaatttgaaaattctctaaccccagaaaaagctataccatatagcttaaggattcaacg |
42662199 |
T |
|
| Q |
119 |
acacaaaatatcaaacctcatgacagcaacatggtttggttgctatctatgtccatattctgttagatggtgtgtccatacatttcattacatactctta |
218 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
42662198 |
acacaaaatatcaaacctcatggcagcaacatggtttggttgctatctctgtccatattctgttagctggtgggtccatacatttcattacatactcttg |
42662099 |
T |
|
| Q |
219 |
tgaatcacaaagcttttcccccttcccatacgtttagtgcgcaacgtgtaatgttacataatcaagcttataaggttttcnnnnnnnactcaatcactga |
318 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42662098 |
t-aatcacaaagcttttcccccttcccatacgtttagtgcgcaacgtgtaatgttacataatcaagcttataaggttttctttttttactcaatcactga |
42662000 |
T |
|
| Q |
319 |
atcacaagcttataagctgaatattgtgaaaacaattaatgcacactaattgtttcaaataataagtaaatcatagatatcattttattgggcatgctta |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42661999 |
atcacaagcttataagctgaatattgtgaaaacaattaatgcacactcattgtttcaaataataagtaaatcatagatatcattttattgggcatgctta |
42661900 |
T |
|
| Q |
419 |
tcatatcttggaagctaggtacagaagtaagagatcaattaattgctatagtattatctac |
479 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
42661899 |
tcatatcttggaagctaggtacagaagtaagagatcaattaattactatagtattatctac |
42661839 |
T |
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