View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15436_low_4 (Length: 441)
Name: NF15436_low_4
Description: NF15436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15436_low_4 |
 | |
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| [»] scaffold0184 (1 HSPs) |
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| [»] scaffold0078 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Complemental strand, 3700444 - 3700038
Alignment:
| Q |
19 |
agcaataacaaagaaggatcttcatgtggtaggtcttgtatgttaactggagggaggaaagtgcagtttattgatgaaggaagagattcaagtaatttga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3700444 |
agcaataacaaagaaggatcttcatgtggtaggtcttgtatgttaactggagggaggaaagtgcagtttattgatgaaggaagagattcaagtaatttga |
3700345 |
T |
|
| Q |
119 |
gggtggtagggataggtgcatcaatagtggggaagatgcaagtgatatgaatgtatttatggagatgaatgagtctcttgcataactcaattatggagga |
218 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3700344 |
gggtggcagggataggtgcatcaatagtggggaagatgcaagtgatatgaatgtatttatggagatgaatgagtctcttgcataactcaattatggagga |
3700245 |
T |
|
| Q |
219 |
ttggtggctgaatagagggactgaaattactgctatatgagttgttttagccattgaatagtaattgatcagttatggctatttatataaagaaatatct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3700244 |
ttggtggctgaatagagggactgaaattactgctatatgagttgttttagccattgaatagtaattgatcagttatggctatttatataaagaaatat-t |
3700146 |
T |
|
| Q |
319 |
tacttttaaaaccaagtttgaga-tttgagttggaggagtgctaataaaacactcttttcaaacacactctttaattggcggaaatttagttggatccca |
417 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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|
| T |
3700145 |
tacttttaaaatcaagtttgagattttgagttggaggagtgctgataaaacactcttttcaaacacactctttaattgcgagaaattcagttggatccca |
3700046 |
T |
|
| Q |
418 |
ccaaatca |
425 |
Q |
| |
|
|||||||| |
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|
| T |
3700045 |
ccaaatca |
3700038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 44 - 277
Target Start/End: Original strand, 3771095 - 3771328
Alignment:
| Q |
44 |
gtggtaggtcttgtatgttaactggagggaggaaagtgcagtttattgatgaaggaagagattcaagtaatttgagggtggtagggataggtgcatcaat |
143 |
Q |
| |
|
|||||| ||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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|
| T |
3771095 |
gtggtaagtcttgtttgttaattggagggaggaaagtgcagtttatggatgaaggaagagattcaagtaatttgagggtggcagggattggtgcatcaat |
3771194 |
T |
|
| Q |
144 |
agtggggaagatgcaagtgatatgaatgtatttatggagatgaatgagtctcttgcataactcaattatggaggattggtggctgaatagagggactgaa |
243 |
Q |
| |
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||||| ||||||||||||||||||||||| | |||||||||||| ||||||||||| |||||||| || || ||||||||| |||||||| | |||| |
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|
| T |
3771195 |
agtggagaagatgcaagtgatatgaatgtggtgatggagatgaattagtctcttgcagaactcaataatagaactttggtggctaaatagaggaattgaa |
3771294 |
T |
|
| Q |
244 |
attactgctatatgagttgttttagccattgaat |
277 |
Q |
| |
|
| |||||||||||||||| ||||||||| |||| |
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|
| T |
3771295 |
actactgctatatgagttcctttagccatagaat |
3771328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 66 - 277
Target Start/End: Complemental strand, 3707078 - 3706867
Alignment:
| Q |
66 |
tggagggaggaaagtgcagtttattgatgaaggaagagattcaagtaatttgagggtggtagggataggtgcatcaatagtggggaagatgcaagtgata |
165 |
Q |
| |
|
||||||||||||| ||||| |||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| | |
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|
| T |
3707078 |
tggagggaggaaactgcagcttatggatgaaggaagagactcaagtaatttgagggtggcagggataggtgcatcaatggtggggaagatgcaagtgaca |
3706979 |
T |
|
| Q |
166 |
tgaatgtatttatggagatgaatgagtctcttgcataactcaattatggaggattggtggctgaatagagggactgaaattactgctatatgagttgttt |
265 |
Q |
| |
|
||||||| | |||||||||||| ||||||||||| |||||||| || || ||| ||||| |||||||||| ||||| |||||||||||||||||||| |
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|
| T |
3706978 |
tgaatgtggtgatggagatgaattagtctcttgcaaaactcaataatagaactttgatggctaaatagagggattgaaactactgctatatgagttgttt |
3706879 |
T |
|
| Q |
266 |
tagccattgaat |
277 |
Q |
| |
|
||||||| |||| |
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|
| T |
3706878 |
tagccatggaat |
3706867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 51 - 272
Target Start/End: Original strand, 3778763 - 3778984
Alignment:
| Q |
51 |
gtcttgtatgttaactggagggaggaaagtgcagtttattgatgaaggaagagattcaagtaatttgagggtggtagggataggtgcatcaatagtgggg |
150 |
Q |
| |
|
||||||| |||| | |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||| |
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|
| T |
3778763 |
gtcttgtttgtttattggagggaggaaagtgcagtttatggatgaaggaagagactcaagtaatttgagggtggcagggataggtgcatcaatggtgggg |
3778862 |
T |
|
| Q |
151 |
aagatgcaagtgatatgaatgtatttatggagatgaatgagtctcttgcataactcaattatggaggattggtggctgaatagagggactgaaattactg |
250 |
Q |
| |
|
||||||||||||| |||||||| | |||||||||||| ||||||||||| |||||||| || || ||||||||| || | ||| | |||| ||||| |
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|
| T |
3778863 |
aagatgcaagtgacatgaatgtggtgatggagatgaattagtctcttgcaaaactcaataatagaactttggtggctaaacacaggaattgaagttacta |
3778962 |
T |
|
| Q |
251 |
ctatatgagttgttttagccat |
272 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
3778963 |
ctatatgagttgttttagccat |
3778984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 43 - 272
Target Start/End: Complemental strand, 3718610 - 3718381
Alignment:
| Q |
43 |
tgtggtaggtcttgtatgttaactggagggaggaaagtgcagtttattgatgaaggaagagattcaagtaatttgagggtggtagggataggtgcatcaa |
142 |
Q |
| |
|
||||||| ||||||| |||| | |||||||||||||||||| ||||| ||||| |||||||| ||||||||||||||||||| |||||| |||||||||| |
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|
| T |
3718610 |
tgtggtaagtcttgtttgtttattggagggaggaaagtgcattttatggatgacggaagagactcaagtaatttgagggtggcagggattggtgcatcaa |
3718511 |
T |
|
| Q |
143 |
tagtggggaagatgcaagtgatatgaatgtatttatggagatgaatgagtctcttgcataactcaattatggaggattggtggctgaatagagggactga |
242 |
Q |
| |
|
| ||||||||||||||||||| |||||||| | |||||||||||| | ||||||||| |||||||| || || ||||||||| |||||||| | ||| |
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|
| T |
3718510 |
tggtggggaagatgcaagtgacatgaatgtggtgatggagatgaattaatctcttgcaaaactcaataatagaactttggtggctaaatagaggaattga |
3718411 |
T |
|
| Q |
243 |
aattactgctatatgagttgttttagccat |
272 |
Q |
| |
|
|| |||||||||||||||| ||||||||| |
|
|
| T |
3718410 |
aactactgctatatgagttcctttagccat |
3718381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 38 - 258
Target Start/End: Original strand, 33005977 - 33006197
Alignment:
| Q |
38 |
cttcatgtggtaggtcttgtatgttaactggagggaggaaagtgcagtttattgatgaaggaagagattcaagtaatttgagggtggtagggataggtgc |
137 |
Q |
| |
|
|||| ||||||||||||||| | || | |||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33005977 |
cttcttgtggtaggtcttgtttttttattggagggaggaaagtgcagtgtatggttgaaggaagagattcaagtaatttgagggtggctgggataggtgc |
33006076 |
T |
|
| Q |
138 |
atcaatagtggggaagatgcaagtgatatgaatgtatttatggagatgaatgagtctcttgcataactcaattatggaggattggtggctgaatagaggg |
237 |
Q |
| |
|
|||||| |||||||||||||||||||| || | || ||||||| ||||||||||||||||| |||||||||| || |||| ||||| || |||||| |
|
|
| T |
33006077 |
atcaatggtggggaagatgcaagtgatttggaagtggttatggacttgaatgagtctcttgcagaactcaattacagaagattcatggctaaacagaggg |
33006176 |
T |
|
| Q |
238 |
actgaaattactgctatatga |
258 |
Q |
| |
|
| ||| ||||| |||||||| |
|
|
| T |
33006177 |
attgatgttactactatatga |
33006197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 286
Target Start/End: Original strand, 12665 - 12769
Alignment:
| Q |
182 |
gatgaatgagtctcttgcataactcaattatggaggattggtggctgaatagagggactgaaattactgctatatgagttgttttagccattgaatagta |
281 |
Q |
| |
|
||||||||||| ||||||| || || || ||||| | ||||||||||||| |||| ||||||| ||||||||||| ||||||| ||||| |||| | | |
|
|
| T |
12665 |
gatgaatgagtttcttgcaaaattctatgatggaagcttggtggctgaatgctgggattgaaattgctgctatatgaattgttttggccatggaattgga |
12764 |
T |
|
| Q |
282 |
attga |
286 |
Q |
| |
|
||||| |
|
|
| T |
12765 |
attga |
12769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 286
Target Start/End: Complemental strand, 60179 - 60075
Alignment:
| Q |
182 |
gatgaatgagtctcttgcataactcaattatggaggattggtggctgaatagagggactgaaattactgctatatgagttgttttagccattgaatagta |
281 |
Q |
| |
|
||||||||||| ||||||| || || || ||||| | ||||||||||||| |||| ||||||| ||||||||||| ||||||| ||||| |||| | | |
|
|
| T |
60179 |
gatgaatgagtttcttgcaaaattctatgatggaagcttggtggctgaatgctgggattgaaattgctgctatatgaattgttttggccatggaattgga |
60080 |
T |
|
| Q |
282 |
attga |
286 |
Q |
| |
|
||||| |
|
|
| T |
60079 |
attga |
60075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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