View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15436_low_8 (Length: 232)
Name: NF15436_low_8
Description: NF15436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15436_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 31 - 212
Target Start/End: Complemental strand, 39537870 - 39537689
Alignment:
| Q |
31 |
cacagacgttatggacgcaattacaaaacacctgcagattggatcttacagagaatggtcagaggagcgcaggcaggaatggctcttatctgagcttagt |
130 |
Q |
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| T |
39537870 |
cacagacgttatggacgcaattacaaaacacctgcagattggatcttacagagaatggtcagaggagcgcaggcaggaatggctcttatctgagcttagt |
39537771 |
T |
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| Q |
131 |
ggaaagcgtcctctcttcggccatgatctccctaagacagaagaaatttccgatgttttggaaactttccatgtcatttcag |
212 |
Q |
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| T |
39537770 |
ggaaagcgtcctctcttcggccatgatctccctaagacagaagaaatttccgatgttttggaaactttccatgtcatttcag |
39537689 |
T |
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Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 31 - 212
Target Start/End: Complemental strand, 1552918 - 1552737
Alignment:
| Q |
31 |
cacagacgttatggacgcaattacaaaacacctgcagattggatcttacagagaatggtcagaggagcgcaggcaggaatggctcttatctgagcttagt |
130 |
Q |
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|||||| |||||||| |||||||| |||||| || |||||||||| ||| |||||||||||||||| ||||||| ||||||||||| || ||||||||| |
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| T |
1552918 |
cacagatgttatggatgcaattacgaaacacttggagattggatcataccgagaatggtcagaggaatgcaggcaagaatggctcttgtccgagcttagt |
1552819 |
T |
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| Q |
131 |
ggaaagcgtcctctcttcggccatgatctccctaagacagaagaaatttccgatgttttggaaactttccatgtcatttcag |
212 |
Q |
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| T |
1552818 |
ggaaagcgccctctcttcggccatgatcttcctaagacagaagaaattgccgatgtttttgataccttccatgtcatttcag |
1552737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 208
Target Start/End: Complemental strand, 30907652 - 30907482
Alignment:
| Q |
38 |
gttatggacgcaattacaaaacacctgcagattggatcttacagagaatggtcagaggagcgcaggcaggaatggctcttatctgagcttagtggaaagc |
137 |
Q |
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|||||||| || || ||||| ||| || ||||||||||||| |||||||||| ||||| ||||||||||||||||| || || ||||| |||||||||| |
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| T |
30907652 |
gttatggatgctataacaaaccacttggagattggatcttatcgagaatggtctgaggaacgcaggcaggaatggctgttgtccgagctcagtggaaagc |
30907553 |
T |
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| Q |
138 |
gtcctctcttcggccatgatctccctaagacagaagaaatttccgatgttttggaaactttccatgtcatt |
208 |
Q |
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| T |
30907552 |
gccctctctttggccccgatcttcctaaaactgaagaaattgctgatgtgttggataccttccgtgtcatt |
30907482 |
T |
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