View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15437_high_1 (Length: 303)
Name: NF15437_high_1
Description: NF15437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15437_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 9071024 - 9071238
Alignment:
| Q |
1 |
gtagagagaactatcatggttttcttattttcagtacaatataggcagaactctttaggataaacacattgttgatcttgtgatgattccttaacgattt |
100 |
Q |
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| T |
9071024 |
gtagagagaactatcatggttttcttattttcagtacaatataggcagaactctttaggataaacacattg---atcttgtgatgattccttaacgattt |
9071120 |
T |
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| Q |
101 |
ggaagggaaatttaataagaggttggtcaggtccacaatatgattctctgcactggtcatgagcattgccacttctgataagcaagatcataagaagttg |
200 |
Q |
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| T |
9071121 |
ggaagggaaatttaataagaggttggttaggtccacaatatgattctctgcactggtcatgagcattgccacttttgataagcaagatcataagaagttg |
9071220 |
T |
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| Q |
201 |
catgatcaaagtaatatg |
218 |
Q |
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||||||||||||| |||| |
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| T |
9071221 |
catgatcaaagtagtatg |
9071238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 9087332 - 9087427
Alignment:
| Q |
3 |
agagagaactatcatggttttcttattttcagtacaatataggcagaactctttaggataaacacattgttgatcttgtgatgattccttaacgatttgg |
102 |
Q |
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| T |
9087332 |
agagagcacaatcatggttctcttatttttagtacaatataagcaaaactc---aggataaacacattg---atcttgtgatgattccttaacgagttgg |
9087425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 8866764 - 8866899
Alignment:
| Q |
13 |
atcatggttttcttattttcagtacaatataggcagaactctttaggataaacacattgttgatcttgtgatgattccttaacgatttggaagggaaatt |
112 |
Q |
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| T |
8866764 |
atcatggtgttcttgttttgagtacaatataggcaaaactc---aggataaacaca---ttcatgttgtgatgattccttaacaagttggaaggggaatc |
8866857 |
T |
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| Q |
113 |
taataagaggttggtcaggtccacaatatgattctctgcact |
154 |
Q |
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| T |
8866858 |
gaataatcggttcgtaaggtccacatgacaattctctgcact |
8866899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 8862886 - 8862986
Alignment:
| Q |
1 |
gtagagagaactatcatggttttcttattttcagtacaatataggcagaactctttaggataaacacattgttgatcttgtgatgattccttaacgattt |
100 |
Q |
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|||||||| || |||||||||| ||| |||||||||||||||||||| ||||| ||||| | ||| |||||||||||||||||||| ||| | || |
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| T |
8862886 |
gtagagaggaccatcatggtttccttgttttcagtacaatataggcaaaactc---aggatgagtaca---ttgatcttgtgatgattcctcaactagtt |
8862979 |
T |
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| Q |
101 |
ggaaggg |
107 |
Q |
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||||||| |
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| T |
8862980 |
ggaaggg |
8862986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 9126479 - 9126561
Alignment:
| Q |
13 |
atcatggttttcttattttcagtacaatataggcagaactctttaggataaacacattgttgatcttgtgatgattccttaacgatttggaa |
104 |
Q |
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||||||||||||| |||| |||||||| ||||| ||||| ||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
9126479 |
atcatggttttctgattt---gtacaatacaggcaaaactc---aggataaacacattg---atcttgtgatgattccttaacgagttggaa |
9126561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 9071294 - 9071326
Alignment:
| Q |
263 |
aagaaagtgtgattaggaagaacaaactctgtg |
295 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
9071294 |
aagagagtgtgattaggaagaacaaactctgtg |
9071326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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