View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15437_high_3 (Length: 372)
Name: NF15437_high_3
Description: NF15437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15437_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 43532976 - 43532634
Alignment:
| Q |
1 |
tcagcttctttttcctacagaaaaacaattgtatgttacacaaatttgtaaaatattagttggaagcgttgtaacttgatactgtggcaacaagtgacaa |
100 |
Q |
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| T |
43532976 |
tcagcttctttttcctacaaaaaaacaattgtatgttacacaaatttgtaaaatattagttggaagcgttgtaacttgatactgtggcaacaagtgacaa |
43532877 |
T |
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| Q |
101 |
aaacgacatcataagtctttgaacaagctgtgcatttgctagaagactagaaactggtctaggaattaagaagatctactggtagtggtacacgagcacc |
200 |
Q |
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| T |
43532876 |
aaatgacatcataagtctttgaacaagctgtgcatttgctagaagactagaaactggtctaggaattaagaagatctactggtagtggtacacgagcacc |
43532777 |
T |
|
| Q |
201 |
aaatatgttacagggccaagtaacatgaacatgattcgatggcaacaacccgctctagctagactcaagtgtactgtagacgcttctttttctaattctc |
300 |
Q |
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| T |
43532776 |
aaatatgttacagggccaagtaacatgaacatgattcgatggcaacaacccgctctagctagactcaagtgtactgtagacgcttctttttctaattctc |
43532677 |
T |
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| Q |
301 |
gtaacaaggttggtattggtatttgtatttgagatgccgacgg |
343 |
Q |
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| T |
43532676 |
gtaacaaggttggtattggtatttgtatttgagatgccgacgg |
43532634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 43528657 - 43528599
Alignment:
| Q |
1 |
tcagcttctttttcctacagaaaaacaattgtatgttacacaaatttgtaaaatattagt |
60 |
Q |
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|||||| |||||||||||| |||||||| |||| |||||||||| ||||||||||||||| |
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| T |
43528657 |
tcagctcctttttcctaca-aaaaacaaatgtaagttacacaaaattgtaaaatattagt |
43528599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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