View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15437_low_1 (Length: 697)
Name: NF15437_low_1
Description: NF15437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15437_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 18 - 687
Target Start/End: Complemental strand, 41709671 - 41709018
Alignment:
| Q |
18 |
agttatcgattcagcttatgataaaaggggtgatatatggttttaaataatgagatgtgtnnnnnnncaaatgcctgatcgttatcctaaatggaatgaa |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
41709671 |
agttatcgattcagcttatgataaaaggggtgatatatggttttaaataatgagatgtgtaaaaaaccaaatgcccgatcgttatcctaaatggaatgaa |
41709572 |
T |
|
| Q |
118 |
cttacaatcatggaattcgatcatcatattatagattagttcctaatcttagcccactccactgagcagatctactcattgctatagtgaaattttgtat |
217 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41709571 |
cttacaatgatggaattcgatcatcaaattatagattagttcctaatcttagcccactccactgagcagatctactcattgctatagtgaaattttgtat |
41709472 |
T |
|
| Q |
218 |
tcgttatattggtgtcggaaccgcagaaaattgtaacacgggcatctgatattggacaagcacgtcatacaagcgttcagttttctatactgaacacgaa |
317 |
Q |
| |
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||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41709471 |
tcgatatattggtgtcggaactgcagaaaattgtaacacgggcatctgatattggacaagcacgtcatacaagcgttcagttttctatactgaacacgat |
41709372 |
T |
|
| Q |
318 |
atgggtccagttttctacactgatatgggtgctgtcaaaatgttgacaagtgaactaagtttaataatagtggtagtacttgtcagtttttcttaataaa |
417 |
Q |
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|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
41709371 |
atgggtccagttttctacactaatatgggtgctgtcaaaatgttgacaagtgaactaagtttaataatagtggtagtacttgtcagtttttcttaataca |
41709272 |
T |
|
| Q |
418 |
caagccaccttaaagtgtctatacactctcaatttctaagcacattgcagcctgtgttataagaaacatggggcataactattgaagaaaacaataatct |
517 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41709271 |
caagccaccttaaagtgtctatacactctcaatttctaagcacattgcagcctgtgttataagaaacatggggcataactattgaagaaaacaataatct |
41709172 |
T |
|
| Q |
518 |
gctttaaactgtgttgcattttaagctatctccagaatcttctgctcctgcagaagaaattaactttgaggaaaactggattaaaatcaatcattgcatc |
617 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41709171 |
gctttaaattgtgttgcattttaagctatctcca----------------cagaagaaattaactttgaggaaaactggattaaaatcaatcattgcatc |
41709088 |
T |
|
| Q |
618 |
tgtctcagtcatattgaattacatcactggaaatttatcattgcgaatattatttaaaacgccatctgtg |
687 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41709087 |
tgtctcagtcatattgaattacatcactggaaatttatcattgcgaatattatttaaaacgccatctgtg |
41709018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 14111382 - 14111682
Alignment:
| Q |
18 |
agttatcgattcagcttatgataaaaggggtgatatatggttttaaataatgagatgtgtnnnnnnncaaatgcctgatcgttatcctaaatggaatgaa |
117 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||| || || |
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| T |
14111382 |
agttatcgattcagcttatgacaaaaggtgtgatgtatggttttaaataatgagatgtgtaaaaaaacaaatgcctgttcgttatcctaaatattattaa |
14111481 |
T |
|
| Q |
118 |
cttacaatcatggaattcgatcatcatattatagattagttcctaatcttagcccactccact-------------gagcagatctactcattgctatag |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||| | ||||| |||||||||| |||||| |
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| T |
14111482 |
cttacaatcatggaattcgatcatcatattataaatgagttcataatcttagcccactccagtcccattttgggtggagcaaatctactcatacctatag |
14111581 |
T |
|
| Q |
205 |
tgaaattttgtattcgttatattggtgtcggaaccgcagaaaattgtaacacgggcatctgatattggacaagcacgtcatacaagcgttcagttttcta |
304 |
Q |
| |
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|||||||||||||| ||| |||||| ||||||||| || ||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
14111582 |
tgaaattttgtatttgttgtattggggtcggaacctcataaaattgtaacacaggcatctgatattggataagcacatcatacaagcgttcagttttcta |
14111681 |
T |
|
| Q |
305 |
t |
305 |
Q |
| |
|
| |
|
|
| T |
14111682 |
t |
14111682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 607 - 684
Target Start/End: Original strand, 14112421 - 14112498
Alignment:
| Q |
607 |
atcattgcatctgtctcagtcatattgaattacatcactggaaatttatcattgcgaatattatttaaaacgccatct |
684 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
14112421 |
atcattgcatctgtcttagtcatattgaattacatcactggaaatttatcattgcgaatactatttaaaacgcaatct |
14112498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 529 - 580
Target Start/End: Original strand, 14111755 - 14111806
Alignment:
| Q |
529 |
tgttgcattttaagctatctccagaatcttctgctcctgcagaagaaattaa |
580 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||| |||||||| |||| |
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|
| T |
14111755 |
tgttgcattttaagctatctccataatcttttgctcctccagaagaagttaa |
14111806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 101 - 133
Target Start/End: Original strand, 32182944 - 32182976
Alignment:
| Q |
101 |
atcctaaatggaatgaacttacaatcatggaat |
133 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
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| T |
32182944 |
atcctaaatggaatgaacttataatcatggaat |
32182976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 101 - 133
Target Start/End: Complemental strand, 13230451 - 13230419
Alignment:
| Q |
101 |
atcctaaatggaatgaacttacaatcatggaat |
133 |
Q |
| |
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||||||||||||||||||||| ||||||||||| |
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| T |
13230451 |
atcctaaatggaatgaacttataatcatggaat |
13230419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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