View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15438_high_10 (Length: 283)
Name: NF15438_high_10
Description: NF15438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15438_high_10 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 165 - 283
Target Start/End: Complemental strand, 7879589 - 7879471
Alignment:
| Q |
165 |
tttattcattgaataaagtctagcgttacgactttaagttgtaattgtatcaccatttaggatcattgggtgatttaatattgatgtttcttcttatcta |
264 |
Q |
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| T |
7879589 |
tttattcattgaataaagtctagtgttaagactataagttgcaattgtagcactatttaggatcgttgggtgatttaatattgatgtgtcttctgatcta |
7879490 |
T |
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| Q |
265 |
aagtcttataaattcatga |
283 |
Q |
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| T |
7879489 |
acgtcttataaattcatga |
7879471 |
T |
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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 7909171 - 7909101
Alignment:
| Q |
42 |
attgtgcaagtcacagtttctctaaaacatgtgcataaagctttcccacagtgctaagacttcaagttgtgtta |
115 |
Q |
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| T |
7909171 |
attgtgcaagtcatagtttctctaaaacatgt--ataaagctttcc-acagtgctaagacttcaagttgtgtta |
7909101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 282
Target Start/End: Complemental strand, 50674987 - 50674911
Alignment:
| Q |
206 |
taattgtatcaccatttaggatcattgggtgatttaatattgatgtttcttcttatctaaagtcttataaattcatg |
282 |
Q |
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| T |
50674987 |
taattgtagcactatataggatcatggggtgattgagttttgatgtttctactggtctgaagtcttataaattcatg |
50674911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 237 - 280
Target Start/End: Complemental strand, 50670132 - 50670089
Alignment:
| Q |
237 |
atttaatattgatgtttcttcttatctaaagtcttataaattca |
280 |
Q |
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| T |
50670132 |
atttaatgttgatgtttctactgatctaaagtcttataaattca |
50670089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 282
Target Start/End: Complemental strand, 48885113 - 48885020
Alignment:
| Q |
189 |
gttacgactttaagttgtaattgtatcaccatttaggatcattgggtgatttaatattgatgtttcttcttatctaaagtcttataaattcatg |
282 |
Q |
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| T |
48885113 |
gttaagactttaagttataactgcagcactatttaggatcattgggtgatttaattttgatgtttcttctgacctcaaatcttataaattcatg |
48885020 |
T |
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