View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15438_high_3 (Length: 483)

Name: NF15438_high_3
Description: NF15438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15438_high_3
NF15438_high_3
[»] chr2 (9 HSPs)
chr2 (1-395)||(18986871-18987265)
chr2 (42-330)||(24786502-24786790)
chr2 (390-477)||(18987467-18987554)
chr2 (23-208)||(23655921-23656106)
chr2 (275-322)||(44586173-44586220)
chr2 (216-322)||(32251845-32251953)
chr2 (23-93)||(44585971-44586041)
chr2 (142-208)||(44586040-44586106)
chr2 (266-322)||(23656164-23656220)
[»] chr3 (19 HSPs)
chr3 (1-394)||(27869957-27870350)
chr3 (23-325)||(21975551-21975854)
chr3 (23-325)||(21997982-21998285)
chr3 (23-323)||(16359045-16359347)
chr3 (86-322)||(5943487-5943723)
chr3 (49-289)||(22924251-22924491)
chr3 (23-322)||(14481089-14481387)
chr3 (1-208)||(13928699-13928903)
chr3 (31-330)||(19185209-19185507)
chr3 (57-325)||(22160146-22160415)
chr3 (390-477)||(27870553-27870640)
chr3 (243-394)||(16642571-16642729)
chr3 (23-322)||(17791238-17791537)
chr3 (23-322)||(19099678-19099977)
chr3 (42-238)||(13926338-13926535)
chr3 (243-394)||(4712483-4712641)
chr3 (348-394)||(14054847-14054893)
chr3 (336-394)||(14062564-14062622)
chr3 (74-122)||(14054601-14054649)
[»] scaffold0094 (2 HSPs)
scaffold0094 (1-394)||(4144-4540)
scaffold0094 (390-476)||(4742-4828)
[»] chr6 (9 HSPs)
chr6 (1-391)||(19546782-19547175)
chr6 (23-330)||(8403258-8403570)
chr6 (23-322)||(9191393-9191686)
chr6 (22-203)||(7682067-7682248)
chr6 (53-330)||(14970421-14970698)
chr6 (390-476)||(19547381-19547467)
chr6 (243-391)||(14989058-14989213)
chr6 (243-394)||(14979946-14980104)
chr6 (23-330)||(10906195-10906500)
[»] chr4 (11 HSPs)
chr4 (1-394)||(18556358-18556753)
chr4 (23-394)||(11097857-11098236)
chr4 (23-323)||(15872314-15872616)
chr4 (23-323)||(15889906-15890208)
chr4 (23-330)||(12229238-12229546)
chr4 (23-208)||(11556395-11556580)
chr4 (44-208)||(18220279-18220443)
chr4 (23-322)||(16284496-16284796)
chr4 (390-476)||(18556956-18557042)
chr4 (22-201)||(30275514-30275693)
chr4 (270-322)||(18231190-18231242)
[»] scaffold0290 (3 HSPs)
scaffold0290 (222-394)||(13772-13944)
scaffold0290 (12-126)||(13649-13763)
scaffold0290 (390-477)||(14146-14233)
[»] chr7 (6 HSPs)
chr7 (23-330)||(13477125-13477432)
chr7 (95-325)||(37945357-37945587)
chr7 (31-329)||(20026330-20026628)
chr7 (23-138)||(22614568-22614683)
chr7 (243-394)||(16060786-16060945)
chr7 (243-319)||(48377172-48377248)
[»] chr5 (7 HSPs)
chr5 (25-208)||(13937394-13937578)
chr5 (22-203)||(24831487-24831668)
chr5 (23-238)||(24759208-24759423)
chr5 (23-325)||(23960375-23960682)
chr5 (256-330)||(17458283-17458356)
chr5 (266-325)||(13936063-13936122)
chr5 (46-122)||(17458485-17458561)
[»] scaffold0166 (1 HSPs)
scaffold0166 (23-238)||(1702-1917)
[»] scaffold0118 (1 HSPs)
scaffold0118 (31-307)||(10463-10740)
[»] scaffold0385 (1 HSPs)
scaffold0385 (48-320)||(14575-14848)
[»] scaffold1001 (1 HSPs)
scaffold1001 (22-158)||(1544-1680)
[»] scaffold0737 (1 HSPs)
scaffold0737 (47-322)||(3155-3430)
[»] chr8 (1 HSPs)
chr8 (42-322)||(29294217-29294497)
[»] scaffold0145 (1 HSPs)
scaffold0145 (23-322)||(12921-13221)
[»] scaffold0003 (1 HSPs)
scaffold0003 (216-394)||(131056-131240)
[»] chr1 (1 HSPs)
chr1 (243-394)||(13881940-13882098)
[»] scaffold1269 (1 HSPs)
scaffold1269 (336-394)||(252-310)
[»] scaffold0091 (1 HSPs)
scaffold0091 (243-394)||(29331-29490)
[»] scaffold0048 (2 HSPs)
scaffold0048 (86-138)||(52635-52687)
scaffold0048 (86-138)||(87135-87187)


Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 18986871 - 18987265
Alignment:
Q  1 aatcaattagaagagagaaattaagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaata 100  Q
    |||||||||||||||| ||||||||||||||| | || |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  18986871 aatcaattagaagagataaattaagatgaataaggaatcaaataagaggtaatagttataatctttgacgataataataatgaccggtatcgagagaata 18986970  T
Q  101 aagccttgaattataatgaagtcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagatt 200  Q
    || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18986971 aaaccttgaataataatgaagtcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggttcagatt 18987070  T
Q  201 aggagaatagttgacgtataaatgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgac 300  Q
    |||||||||||||||||||||||||| ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18987071 aggagaatagttgacgtataaatgactatgaatgtgaggacgaagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgat 18987170  T
Q  301 aatggtgaggtagaacctagttgtaaagagggtagatgttatgataacgaataagtaaacaacttaagaccaagattgaggaatatggtatgatg 395  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18987171 gatggtgaggtagaacctagttgtaaagagggtagatgttatgataacgaatatgtaaacaacttaagaccaagattgaggaatatggtatgatg 18987265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 42 - 330
Target Start/End: Complemental strand, 24786790 - 24786502
Alignment:
Q  42 ataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaagtcttggtgagggaagtttag 141  Q
    ||||||| |||||||||||||  |||| |||||||||||| ||  | ||||||||||| || ||||| ||||||||  |||||| |||||| || ||       
T  24786790 ataagagttaatagttataatggttgacgataataataataactagaatcgagagaatgaaaccttggattataatatagtcttagtgaggaaacttgtt 24786691  T
Q  142 gaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaatgacgatgaatgtgaggca 241  Q
    |||||||||| ||||||  ||||| |||||||||| || |||||||||| ||| |||||||| |||| |  || | ||||||||| | |||  ||||       
T  24786690 gaagtcgaaattaatgataaggtgagataataactataaattagaacgaagttaagattaggggaatgggcgatgcataaatgactacgaacatgagaac 24786591  T
Q  242 aaagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagttgtaaagag 330  Q
    ||||||||||||  ||||||    ||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  24786590 aaagtaataagagataaagttgttttattgagaagaataagtatgaaggagttaatgacgatggtgaggtaggacctagttgtaaagag 24786502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 390 - 477
Target Start/End: Original strand, 18987467 - 18987554
Alignment:
Q  390 atgatgagtaatgttatgtaaacttataagtacgcgcggtaaaagttaatgaggtctatatcataaagatgctgagagtgatgatgtc 477  Q
    |||||||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  18987467 atgatgagtaatgttatgtaaacttataagtatgtgcggtgaaagttgatgaggtctatatcataaagatgctgagagtgatgatgtc 18987554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 23 - 208
Target Start/End: Original strand, 23655921 - 23656106
Alignment:
Q  23 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaagt 122  Q
    |||||||||||||||    ||||| ||||| |||||||||  |||| |||||||||||||||  ||||||||||||| || | ||||||||||||| |||    
T  23655921 aagatgaataggaaaaaggataagtggtaacagttataatggttgacgataataataatgactagtatcgagagaatgaaacattgaattataatgtagt 23656020  T
Q  123 cttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaat 208  Q
    ||| |||| | |||||   |||||||| | |||| |  ||||| |||||| |||||| ||||||| || ||| |||||||| ||||    
T  23656021 cttagtgaagaaagttgttgaagtcgagattaataataaggtgagataattactttaaattagaatgaagttaagattaggggaat 23656106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 322
Target Start/End: Original strand, 44586173 - 44586220
Alignment:
Q  275 agaataagtatgaaggagttaatgacaatggtgaggtagaacctagtt 322  Q
    |||||||||||||| ||||||||| ||||||||||| |||||||||||    
T  44586173 agaataagtatgaaagagttaatggcaatggtgaggaagaacctagtt 44586220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 322
Target Start/End: Original strand, 32251845 - 32251953
Alignment:
Q  216 gtataaatgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacg--ttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtag 313  Q
    ||||||||||||| ||||| |||    |||||||||||| |||| || |   ||||||||||||||||| ||||| |||||||||| ||| |||||| ||    
T  32251845 gtataaatgacgacgaatgcgagaacgaagtaataagatataaattctctctttaatgagaagaataagcatgaaagagttaatgataatagtgaggaag 32251944  T
Q  314 aacctagtt 322  Q
    || ||||||    
T  32251945 aatctagtt 32251953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 44585971 - 44586041
Alignment:
Q  23 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcga 93  Q
    |||||||||||||||    |||||||||||||||||||||  |||| ||||||||||| |||  |||||||    
T  44585971 aagatgaataggaaataggataagaggtaatagttataatggttgacgataataataacgactagtatcga 44586041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 44586040 - 44586106
Alignment:
Q  142 gaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaat 208  Q
    ||||| |||| |||||| |||||| ||||||||||||| ||||||| || ||| |||||||| ||||    
T  44586040 gaagttgaaattaatgatgaggtgagataataactttaaattagaatgaagttaagattaggggaat 44586106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 23656164 - 23656220
Alignment:
Q  266 ttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagtt 322  Q
    ||| |||| |||||||||||||| || |||||| ||| ||||||| |||||||||||    
T  23656164 ttattgaggagaataagtatgaaagacttaatggcaacggtgaggaagaacctagtt 23656220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 27869957 - 27870350
Alignment:
Q  1 aatcaattagaagagagaaattaagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaata 100  Q
    |||| |||||||||||||||||||||||||||||||| || ||||||||||||||| ||||| ||||| |||||||||||| || |||||||||||||||    
T  27869957 aatcgattagaagagagaaattaagatgaataggaaaccagataagaggtaatagtgataatgtttgacgataataataataaccggtatcgagagaata 27870056  T
Q  101 aagccttgaattataatgaagtcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagatt 200  Q
    || |||||||||||||||||||||||||||||||| |||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27870057 aaaccttgaattataatgaagtcttggtgagggaaatttatgaagttgaaagtaattacgaggtgcgataataactttagattagaacgaggtttagatt 27870156  T
Q  201 aggagaatagttgacgtataaatgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgac 300  Q
    |||||||| ||||||||||||||||||||||||||||||   |||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||    
T  27870157 aggagaatggttgacgtataaatgacgatgaatgtgaggacgaagtaataagatgtaaaggcgcgttaatgagaagaattagtatgaaggagttaatgac 27870256  T
Q  301 aatggtgaggtagaacctagttgtaaagagggtagatgttatgataacgaataagtaaacaacttaagaccaagattgaggaatatggtatgat 394  Q
      |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  27870257 ggtggtgaggtagaacctagttgtaaagagaggagatgttatgataacgaataagtaaacaacttaagactaagaatgaggaatatggtatgat 27870350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 23 - 325
Target Start/End: Complemental strand, 21975854 - 21975551
Alignment:
Q  23 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaagt 122  Q
    ||||||| |||||||||  ||||| |||||||  |||||| |||||||||||||||||  || |||||||||||||||||  ||||||||||||  |||     
T  21975854 aagatgagtaggaaagcggataagcggtaataaatataatgtttgatgataataataacaaccggtatcgagagaataaaatcttgaattataaataagc 21975755  T
Q  123 cttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaa 222  Q
    ||| |||||| ||||||  |||||| | |||| |||  | ||| |||||||| |||| ||||| |  | ||| |||||||||||||||| || ||||| |    
T  21975754 cttagtgaggaaagtttctgaagtcaagagtattgataaagtgagataataaatttaaattaggattaagttaagattaggagaatagtcgatgtataga 21975655  T
Q  223 tgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgtt-aatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagt 321  Q
    |||||| |||||||||   || |||||||||| ||||||||  || ||| | |||||||| || ||| ||||||||||| |||||| || |||||||||     
T  21975654 tgacgacgaatgtgagaacaaggtaataagatataaagtcattttaaattaaaagaataattacgaaagagttaatgacgatggtggggaagaacctagg 21975555  T
Q  322 tgta 325  Q
    ||||    
T  21975554 tgta 21975551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 23 - 325
Target Start/End: Complemental strand, 21998285 - 21997982
Alignment:
Q  23 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaagt 122  Q
    ||||||| |||||||||  ||||| |||||||  |||||| |||||||||||||||||  || |||||||||||||||||  ||||||||||||  |||     
T  21998285 aagatgagtaggaaagcggataagcggtaataaatataatgtttgatgataataataacaaccggtatcgagagaataaaatcttgaattataaataagc 21998186  T
Q  123 cttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaa 222  Q
    ||| |||||| ||||||  |||||| | |||| |||  | ||| |||||||| |||| ||||| |  | ||| |||||||||||||||| || ||||| |    
T  21998185 cttagtgaggaaagtttctgaagtcaagagtattgataaagtgagataataaatttaaattaggattaagttaagattaggagaatagtcgatgtataga 21998086  T
Q  223 tgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgtt-aatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagt 321  Q
    |||||| |||||||||   || |||||||||| ||||||||  || ||| | |||||||| || ||| ||||||||||| |||||| || |||||||||     
T  21998085 tgacgacgaatgtgagaacaaggtaataagatataaagtcattttaaattaaaagaataattacgaaagagttaatgacgatggtggggaagaacctagg 21997986  T
Q  322 tgta 325  Q
    ||||    
T  21997985 tgta 21997982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 23 - 323
Target Start/End: Original strand, 16359045 - 16359347
Alignment:
Q  23 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaagt 122  Q
    ||||||| |||||||||  ||||| | ||||||||||||  ||||| |||||||||||  || || ||||||||||||||  ||||||||||||||||||    
T  16359045 aagatgagtaggaaagcggataagcgataatagttataaagtttgacgataataataacaaccggcatcgagagaataaaatcttgaattataatgaagt 16359144  T
Q  123 cttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaa 222  Q
    ||| |||||| ||||||  || ||| |||||| |||     || ||||||||||||| ||||| |  | ||| |||||||||||||||| || ||||| |    
T  16359145 cttagtgaggaaagtttctgatgtcaaaagtactgatagaatgagataataactttaaattaggattaagttaagattaggagaatagtcgatgtataga 16359244  T
Q  223 tgacgatgaatgtgaggcaaaagtaataaga-tgtaaagtcacgtt-aatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctag 320  Q
    |||||| |||||||||   || ||||||||| | |||||||   || |||||||||||||| || ||| ||||||||||| |||||| || |||||||||    
T  16359245 tgacgacgaatgtgagaacaaggtaataagattataaagtcgtattaaatgagaagaataattacgaaagagttaatgacgatggtggggaagaacctag 16359344  T
Q  321 ttg 323  Q
    |||    
T  16359345 ttg 16359347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 86 - 322
Target Start/End: Original strand, 5943487 - 5943723
Alignment:
Q  86 ggtatcgagagaataaagccttgaattataatgaagtcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattag 185  Q
    ||||||||||||||||| |||||||||||||||||||| | |||| | |||||   ||||| ||| |||||||  ||||| |||||||| || | |||||    
T  5943487 ggtatcgagagaataaaaccttgaattataatgaagtcgtagtgacgaaagttattgaagttgaaggtaatgataaggtgtgataataatttcaaattag 5943586  T
Q  186 aacgaggtttagattaggagaatagttgacgtataaatgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagtat 285  Q
    ||| |  || ||||||||||||| ||  | ||||| ||||||| |||||||||    |  ||||||||| ||||||| | |||||||||||||||||| |    
T  5943587 aacaaaattaagattaggagaatggtcaatgtatagatgacgaggaatgtgagaatgagataataagatataaagtcgctttaatgagaagaataagttt 5943686  T
Q  286 gaaggagttaatgacaatggtgaggtagaacctagtt 322  Q
    ||| ||||||||||||||||||||| |||||| ||||    
T  5943687 gaaagagttaatgacaatggtgaggaagaaccaagtt 5943723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 49 - 289
Target Start/End: Complemental strand, 22924491 - 22924251
Alignment:
Q  49 gtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaagtcttggtgagggaagtttaggaagtcg 148  Q
    |||||||||||||| ||||| ||||||||||| ||| | ||||||||||||||  |||| ||||||||| ||||||| |||||| |||||   |||||||    
T  22924491 gtaatagttataatgtttgacgataataataaagaccgatatcgagagaataactccttaaattataataaagtcttagtgaggaaagttgttgaagtcg 22924392  T
Q  149 aaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaatgacgatgaatgtgaggcaaaagtaa 248  Q
    |||||||  |  || || ||||||||||||| | ||||| || ||| || |||  |||||  | || ||||| ||||||| |||||||||   |||||||    
T  22924391 aaagtaactataagatgagataataactttaaaatagaatgaagttaagtttaatagaatgatcgatgtatatatgacgacgaatgtgagaacaaagtaa 22924292  T
Q  249 taagatgtaaagtcacgttaatgagaagaataagtatgaag 289  Q
    |||||| ||||||||| |||||| |||||||||||||||||    
T  22924291 taagatataaagtcactttaatgggaagaataagtatgaag 22924251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 23 - 322
Target Start/End: Original strand, 14481089 - 14481387
Alignment:
Q  23 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaagt 122  Q
    ||||||||| ||||||   |||||||||||||||||||||  |||| |||||||||||||||  |||||||||||||||| ||||||||||||||| |||    
T  14481089 aagatgaatgggaaagaggataagaggtaatagttataatggttgacgataataataatgactagtatcgagagaataaaaccttgaattataatgtagt 14481188  T
Q  123 cttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaa 222  Q
    ||| |||||| |||||   |||||| ||| ||||||  ||||| || | |||||||| |||||||||  ||| ||||||||  ||| |  || |  || |    
T  14481189 cttagtgaggaaagttgttgaagtcaaaattaatgataaggtgagacagtaactttaaattagaacggagttaagattagggaaatggacgatgcctaga 14481288  T
Q  223 tgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagtt 322  Q
    |||| | |||  ||||   ||||||||||||| | |||  || ||| |||| || ||||||||||| |||||||||| ||||| |||| |||||||||||    
T  14481289 tgactacgaacatgagaacaaagtaataagatat-aagatactttattgaggaggataagtatgaaagagttaatgaaaatggagagggagaacctagtt 14481387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 13928699 - 13928903
Alignment:
Q  1 aatcaattagaagagagaaattaagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaata 100  Q
    ||||||||||||||||||||    |||||||||||| | | ||||||||||||||||||||| ||||| |||||  |||| ||| |||||||||||||||    
T  13928699 aatcaattagaagagagaaa----gatgaataggaaggaagataagaggtaatagttataatatttgacgataaatataacgaccggtatcgagagaata 13928794  T
Q  101 aagcctt-gaattataatgaagtcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagat 199  Q
    |  ||||  ||||||||||||||||||| |||| |||||   |||||||||||||| ||  || || | ||||||||||| | ||||| || ||| || |    
T  13928795 actccttaaaattataatgaagtcttggcgaggaaagttgctgaagtcgaaagtaaagataagatggggtaataactttaaaatagaatgaagttaaggt 13928894  T
Q  200 taggagaat 208  Q
    |||||||||    
T  13928895 taggagaat 13928903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 31 - 330
Target Start/End: Complemental strand, 19185507 - 19185209
Alignment:
Q  31 taggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaagtcttggtga 130  Q
    |||||||||  ||||| ||||||||||||||| ||||| |||||||||||  || ||||| |||||||||||  |||||||| |||||||||||| ||||    
T  19185507 taggaaagcggataagcggtaatagttataatgtttgacgataataataacaactggtattgagagaataaaatcttgaattgtaatgaagtcttagtga 19185408  T
Q  131 gggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaatgacgatg 230  Q
    || ||||||   ||||| |||||| |||  |  || ||||||||||| | ||||| |  | ||| |||||||||||||||| || ||||| |||||   |    
T  19185407 ggaaagtttctaaagtcaaaagtactgataaaatgagataataacttcaaattaggattaagttaagattaggagaatagtcgatgtatagatgacagcg 19185308  T
Q  231 aatgtgaggcaaaagtaataagatgtaaagtcacgtt-aatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagttgtaaaga 329  Q
    ||||||||   || |||||||||| ||||||    || |||||||||||||| || |||  |||||||||  |||||| |  |||||||||||||| |||    
T  19185307 aatgtgagaacaaggtaataagatataaagttgttttaaatgagaagaataattacgaa--agttaatgatgatggtgggtaagaacctagttgtataga 19185210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 57 - 325
Target Start/End: Complemental strand, 22160415 - 22160146
Alignment:
Q  57 tataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaagtcttggtgagggaagtttaggaagtcgaaagtaat 156  Q
    |||||| ||||| |||||||||||  || |||||||||||||||||  || |||||||||  ||| ||| |||||  ||||||  |||||| | |||| |    
T  22160415 tataatgtttgacgataataataacaaccggtatcgagagaataaaatctagaattataaataagccttagtgagaaaagtttctgaagtcaagagtatt 22160316  T
Q  157 gacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaatgacgatgaatgtgaggcaaaagtaataagatgt 256  Q
    ||  | ||| |||||||| |||| ||||| |  | ||| |||||||||||||||| || ||||| ||||||| |||||||||   || |||||||||| |    
T  22160315 gataaagtgagataataaatttaaattaggattaagttaagattaggagaatagtcgatgtatagatgacgacgaatgtgagaacaaggtaataagatat 22160216  T
Q  257 aaagtcacgtt-aatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagttgta 325  Q
    |||||||  || ||| | |||||||| || ||| ||||||||||| |||||| || ||||||||| ||||    
T  22160215 aaagtcattttaaattataagaataattacgaaagagttaatgacgatggtggggaagaacctaggtgta 22160146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 390 - 477
Target Start/End: Original strand, 27870553 - 27870640
Alignment:
Q  390 atgatgagtaatgttatgtaaacttataagtacgcgcggtaaaagttaatgaggtctatatcataaagatgctgagagtgatgatgtc 477  Q
    ||||||||||||||||||||||||||||| || |  || | |||||  ||||||||||||||||||||||| |||||||||| |||||    
T  27870553 atgatgagtaatgttatgtaaacttataaatatgttcgatgaaagtcgatgaggtctatatcataaagatgttgagagtgattatgtc 27870640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 394
Target Start/End: Complemental strand, 16642729 - 16642571
Alignment:
Q  243 aagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagttgtaaagagggtaga------ 336  Q
    |||||||||||| |||||||   ||| |||| |||||||||| ||| |||||||| ||||| |||||| | ||||||| | || |||| | |||          
T  16642729 aagtaataagatataaagtcgttttattgaggagaataagtaggaaagagttaataacaattgtgaggaaaaacctagatatatagagcggagactttgc 16642630  T
Q  337 -tgttatgataacgaataagtaaacaacttaagaccaagattgaggaatatggtatgat 394  Q
     ||| |||||| |||||||| ||||||||| ||||||||| ||||||||||||||||||    
T  16642629 atgtaatgatagcgaataagaaaacaacttgagaccaagaatgaggaatatggtatgat 16642571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 322
Target Start/End: Complemental strand, 17791537 - 17791238
Alignment:
Q  23 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaagt 122  Q
    ||||||||||||| ||   || |||| ||||||||||||   |||| ||||||||||| |||  |||||||  |||| || ||||||||| ||||  |||    
T  17791537 aagatgaataggagagaggatgagagataatagttataacgattgacgataataataacgactagtatcgaaggaatgaacccttgaattgtaatatagt 17791438  T
Q  123 cttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaa 222  Q
    ||| |  ||| |||||   |||||||||| ||||||  ||||| ||||| ||||||| |||||||| | ||| ||||||||  ||| |  || | |||||    
T  17791437 cttagctaggaaagttgctgaagtcgaaactaatgataaggtgagataacaactttaaattagaacaaagttaagattagggaaatggacgatgcataaa 17791338  T
Q  223 tgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaat-gagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagt 321  Q
    |||| | |||  ||||   |||| |||||||| ||| | ||  || || ||| || ||||||||||| ||||||||||||||||||||| ||||||||||    
T  17791337 tgactacgaacatgagaacaaagaaataagatataa-gacagttttattgaggaggataagtatgaaagagttaatgacaatggtgaggaagaacctagt 17791239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 322
Target Start/End: Complemental strand, 19099977 - 19099678
Alignment:
Q  23 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaagt 122  Q
    ||||||||||||| ||   || |||| ||||||||||||   |||| ||||||||||| |||  |||||||  |||| || ||||||||| ||||  |||    
T  19099977 aagatgaataggagagaggatgagagataatagttataacgattgacgataataataacgactagtatcgaaggaatgaacccttgaattgtaatatagt 19099878  T
Q  123 cttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaa 222  Q
    ||| |  ||| |||||   |||||||||| ||||||  ||||| ||||| ||||||| |||||||| | ||| ||||||||  ||| |  || | |||||    
T  19099877 cttagctaggaaagttgctgaagtcgaaactaatgataaggtgagataacaactttaaattagaacaaagttaagattagggaaatggacgatgcataaa 19099778  T
Q  223 tgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaat-gagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagt 321  Q
    |||| | |||  ||||   |||| |||||||| ||| | ||  || || ||| || ||||||||||| ||||||||||||||||||||| ||||||||||    
T  19099777 tgactacgaacatgagaacaaagaaataagatataa-gacagttttattgaggaggataagtatgaaagagttaatgacaatggtgaggaagaacctagt 19099679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 238
Target Start/End: Original strand, 13926338 - 13926535
Alignment:
Q  42 ataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagcctt-gaattataatgaagtcttggtgagggaagttta 140  Q
    ||||||||||||||||||||| ||||| |||||  |||| ||| | ||||| ||||||||  ||||  ||||||||||||||||| | |||| |||||      
T  13926338 ataagaggtaatagttataatatttgacgataaatataacgaccgatatcgtgagaataactccttaaaattataatgaagtcttagcgaggaaagttgc 13926437  T
Q  141 ggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaatgacgatgaatgtgag 238  Q
     |||||| ||||||| ||  || || | ||||||||||| | ||||| || ||| || ||| |||||   | ||  |||| |||||||||||||||||    
T  13926438 tgaagtcaaaagtaacgataagatggggtaataactttaaaatagaatgaagttaaggttaagagaaggatcgatatatagatgacgatgaatgtgag 13926535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 394
Target Start/End: Original strand, 4712483 - 4712641
Alignment:
Q  243 aagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagttgtaaagagggtag------- 335  Q
    |||||||||||| |||||||   ||| |||| |||||||||| ||| |||||||| ||||| |||||| | ||||||| | || |||  | ||           
T  4712483 aagtaataagatataaagtcgttttattgaggagaataagtaggaaagagttaataacaattgtgaggaaaaacctagatatatagaacgaagattttgc 4712582  T
Q  336 atgttatgataacgaataagtaaacaacttaagaccaagattgaggaatatggtatgat 394  Q
    |||| |||||| |||||||| ||||||||| ||||||||| ||||||||| ||||||||    
T  4712583 atgtaatgatagcgaataagaaaacaacttgagaccaagaatgaggaatagggtatgat 4712641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 394
Target Start/End: Original strand, 14054847 - 14054893
Alignment:
Q  348 cgaataagtaaacaacttaagaccaagattgaggaatatggtatgat 394  Q
    |||||||| ||||||||| ||||||||| ||| ||||||||||||||    
T  14054847 cgaataagaaaacaacttgagaccaagaatgaagaatatggtatgat 14054893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 394
Target Start/End: Original strand, 14062564 - 14062622
Alignment:
Q  336 atgttatgataacgaataagtaaacaacttaagaccaagattgaggaatatggtatgat 394  Q
    |||| |||||| |||||||| ||| ||||| ||||||||| |||||||||||| |||||    
T  14062564 atgtaatgatagcgaataagaaaaaaacttgagaccaagaatgaggaatatggcatgat 14062622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 14054601 - 14054649
Alignment:
Q  74 ataataatgacaggtatcgagagaataaagccttgaattataatgaagt 122  Q
    ||||||||||| |||||| ||||||| || ||| |||||||||||||||    
T  14054601 ataataatgaccggtatcaagagaatgaaacctcgaattataatgaagt 14054649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 4144 - 4540
Alignment:
Q  1 aatcaattagaagagagaaattaagatgaataggaaagcaa----ataagaggtaatagttataatctttgatgataataataatgacaggtatcgagag 96  Q
    |||| |||||||||||| |||||||||||||||||||| ||    | |||||||| |||||||||| ||||| |||||||||||||||  ||||||||||    
T  4144 aatcgattagaagagagcaattaagatgaataggaaagaaagaagagaagaggtagtagttataatgtttgacgataataataatgactagtatcgagag 4243  T
Q  97 aataaagccttgaattataatgaagtcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggttta 196  Q
    ||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||  | ||||||||||||||||| ||||||| |||||| |    
T  4244 aatgaaaccttgaattataatgaagtcttggtgagggaagtttatgaagtcgaaagtaatgatcaagtgcgataataactttaaattagaatgaggttca 4343  T
Q  197 gattaggagaatagttgacgtataaatgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaa 296  Q
     ||||||||||| ||| ||||||| |||||||| |||||||||   ||||||||||||||||||   | |||||||| | |||| |||||||||||||||    
T  4344 aattaggagaatggtttacgtatagatgacgatcaatgtgaggacgaagtaataagatgtaaaggtgcattaatgag-ataatatgtatgaaggagttaa 4442  T
Q  297 tgacaatggtgaggtagaacctagttgtaaagagggtagatgttatgataacgaataagtaaacaacttaagaccaagattgaggaatatggtatgat 394  Q
    |||| ||||| ||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  4443 tgacgatggttaggtagaacctagttgtaaagggaggagatgttatgataacgaataagtaaacaacttaagactaagaatgaggaatatggtatgat 4540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 390 - 476
Target Start/End: Original strand, 4742 - 4828
Alignment:
Q  390 atgatgagtaatgttatgtaaacttataagtacgcgcggtaaaagttaatgaggtctatatcataaagatgctgagagtgatgatgt 476  Q
    ||||||||||||||||||||||| ||||| |||   || | |||||| ||||||||| ||||||||||||| |||||||||||||||    
T  4742 atgatgagtaatgttatgtaaacctataaatacattcgatgaaagttgatgaggtctgtatcataaagatgatgagagtgatgatgt 4828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 19546782 - 19547175
Alignment:
Q  1 aatcaattagaagagagaaattaagatgaataggaaagcaa----ataagaggtaatagttataatctttgatgataataataatgacaggtatcgagag 96  Q
    |||| |||||||||||  |||||||||||||||||||| ||    ||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||    
T  19546782 aatcgattagaagagaccaattaagatgaataggaaagaaagcagataagaggtaatagttataatgtttgacgataataataatgactggtatcgagag 19546881  T
Q  97 aataaagccttgaattataatgaagtcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggttta 196  Q
    ||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||  | ||||||||||||||||| |||||||||||||| |    
T  19546882 aatgaaaccttgaattataatgaagtcttggtgagggaagtttatgaagtcgaaagtaatgattaagtgcgataataactttaaattagaacgaggttca 19546981  T
Q  197 gattaggagaatagttgacgtataaatgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaa 296  Q
    |||||||||||| ||| ||||||| |||||| | |||||||||   ||||||||| ||||||||     |||||||| | |||| |||||||||||||||    
T  19546982 gattaggagaatggtttacgtatagatgacggtcaatgtgaggacgaagtaataaaatgtaaaggtgaattaatgag-ataatatgtatgaaggagttaa 19547080  T
Q  297 tgacaatggtgaggtagaacctagttgtaaagagggtagatgttatgataacgaataagtaaacaacttaagaccaagattgaggaatatggtat 391  Q
    |||| ||||| |||||||||||| |||||||| | | ||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||    
T  19547081 tgacgatggttaggtagaacctatttgtaaagggaggagatgttatgataacgaataagtaaacaacttaagactaagaatgagaaatatggtat 19547175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 23 - 330
Target Start/End: Original strand, 8403258 - 8403570
Alignment:
Q  23 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaagt 122  Q
    ||||||| |||||||||  ||||| ||||||||||||||| |||||  ||||| ||||  || |||||| ||||||||||  |||||||||| ||||||     
T  8403258 aagatgagtaggaaagcggataagcggtaatagttataatgtttgacaataatgataacaaccggtatcaagagaataaaatcttgaattatgatgaagc 8403357  T
Q  123 cttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaa 222  Q
    ||| |||||| ||||||  |||||| |||||| |||  | ||| ||||||||||||| ||||| |  | ||| |||||||||||||||| || ||||| |    
T  8403358 cttagtgaggaaagtttctgaagtcaaaagtactgataaagtgagataataactttaaattaggattaagttaagattaggagaatagtcgatgtataga 8403457  T
Q  223 tgacgatgaatgtgag-gcaa---aagtaataagatgtaaagtcacgtt-aatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacc 317  Q
    |||||| |||||||||  |||   || ||||||||| ||||||    || |||||||||||||| || ||| ||||||||||| |||||| || ||||||    
T  8403458 tgacgacgaatgtgagaacaagataattaataagatataaagtagttttaaatgagaagaataattacgaaagagttaatgacgatggtggggaagaacc 8403557  T
Q  318 tagttgtaaagag 330  Q
    |||||||| ||||    
T  8403558 tagttgtatagag 8403570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 23 - 322
Target Start/End: Complemental strand, 9191686 - 9191393
Alignment:
Q  23 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaagt 122  Q
    ||||||||||||||||   ||||||| || |||||||||  || |  ||| |||||||  || ||||||||||||| ||| ||||||||||||| |||||    
T  9191686 aagatgaataggaaagaggataagagatattagttataaggttagtcgatgataataacaaccggtatcgagagaacaaaaccttgaattataacgaagt 9191587  T
Q  123 cttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaa 222  Q
    | | |||||| |||||   ||||      || ||||  ||||| ||| |||| |||| ||||||| || ||| ||||||||||||| || || ||||| |    
T  9191586 cgtagtgaggaaagttgctgaag------gtgatgataaggtgagattataattttaaattagaatgaagttaagattaggagaatggtcgatgtataca 9191493  T
Q  223 tgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagtt 322  Q
    || ||| ||| |||||    | |||||||||| |||||| || ||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||    
T  9191492 tggcgacgaaagtgagaacgaggtaataagatataaagtaactttaatgagaggaataagtatgaaagagttaatgacaatggtgaggaagaacctagtt 9191393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 7682067 - 7682248
Alignment:
Q  22 taagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaag 121  Q
    |||||||||||||||||   |||||||||||||||||||||  |||| | |||||||||||||  |||||||||||||||| ||||||||||||||| ||    
T  7682067 taagatgaataggaaagaggataagaggtaatagttataatgattgacgttaataataatgactagtatcgagagaataaaaccttgaattataatgtag 7682166  T
Q  122 tcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattagg 203  Q
    |||| |||||| |||||   |||||| ||| ||||||  ||||   ||| |||||||| |||||||||  ||| ||||||||    
T  7682167 tcttagtgaggaaagttgttgaagtcaaaattaatgataaggtaacatagtaactttaaattagaacggagttaagattagg 7682248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 53 - 330
Target Start/End: Complemental strand, 14970698 - 14970421
Alignment:
Q  53 tagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaagtcttggtgagggaagtttaggaagtcgaaag 152  Q
    |||||||||  || || ||| ||||||||||| | | || ||||||||||||| |||||||||||| |||| | |||||| |||||   |||||| |||     
T  14970698 tagttataaggttagacgatgataataatgaccgatgtcaagagaataaagccatgaattataatggagtcgtagtgaggaaagttgttgaagtcaaaat 14970599  T
Q  153 taatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaatgacgatgaatgtgaggcaaaagtaataag 252  Q
    ||||||   |||| |||||||||| || |||||| | |  || |||  ||| |||| |  || | ||| ||||| | |||  ||||   |||||||||||    
T  14970598 taatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaacaaagtaataag 14970499  T
Q  253 atgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagttgtaaagag 330  Q
    || || |||    ||| ||||||||||||||||||||||||||||||| ||||||| |||| | ||||||||||||||    
T  14970498 atatacagtggttttattgagaagaataagtatgaaggagttaatgacgatggtgaagtagtatctagttgtaaagag 14970421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 390 - 476
Target Start/End: Original strand, 19547381 - 19547467
Alignment:
Q  390 atgatgagtaatgttatgtaaacttataagtacgcgcggtaaaagttaatgaggtctatatcataaagatgctgagagtgatgatgt 476  Q
    ||||||||||||||||||||||| ||||| |||| ||  | |||||| ||||||| | |||||||||||||  ||||||||||||||    
T  19547381 atgatgagtaatgttatgtaaacctataaatacgggcaatgaaagttgatgaggtttgtatcataaagatgaagagagtgatgatgt 19547467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 391
Target Start/End: Original strand, 14989058 - 14989213
Alignment:
Q  243 aagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagttgtaaagagggtaga------ 336  Q
    |||||||||||| |||||||   ||| |||| |||||||||| ||| |||||||| ||||| |||||| | ||||||| | || |||| | |||          
T  14989058 aagtaataagatataaagtcgttttattgaggagaataagtaggaaagagttaataacaattgtgaggaaaaacctagatatatagagcggagactttgc 14989157  T
Q  337 -tgttatgataacgaataagtaaacaacttaagaccaagattgaggaatatggtat 391  Q
     ||| ||||||||||||||| ||||||||| || |||||| |||||||| ||||||    
T  14989158 atgtaatgataacgaataagaaaacaacttgaggccaagaatgaggaatttggtat 14989213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 394
Target Start/End: Original strand, 14979946 - 14980104
Alignment:
Q  243 aagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagttgtaaagagggtag------- 335  Q
    |||||||||||| |||||||   ||| |||| |||||||||| ||| |||||||| ||||| |||||| | ||||||| | || |||  | ||           
T  14979946 aagtaataagatataaagtcgttttattgaggagaataagtaggaaagagttaataacaattgtgaggaaaaacctagatatatagaacgaagattttgc 14980045  T
Q  336 atgttatgataacgaataagtaaacaacttaagaccaagattgaggaatatggtatgat 394  Q
    |||| |||||| |||||||| ||||||||| ||||||||| ||||||||| ||||||||    
T  14980046 atgtaatgatagcgaataagaaaacaacttgagaccaagaatgaggaatagggtatgat 14980104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 330
Target Start/End: Original strand, 10906195 - 10906500
Alignment:
Q  23 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaagt 122  Q
    ||||| ||||||||||   ||||||| || |||||||||  || || ||| ||||||| ||   |||||||||||||||| |||||||||| |||| |||    
T  10906195 aagattaataggaaagaggataagagatattagttataaggttagacgatgataataacgatcagtatcgagagaataaaaccttgaattaaaatggagt 10906294  T
Q  123 cttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaa 222  Q
    ||| |||||  |||||   || || ||  |||||||  |||||  || ||||||||| |||||||  | ||| ||| ||||||||| || |  ||||| |    
T  10906295 cttagtgagtaaagttgctgacgttgagggtaatgataaggtgatatgataactttaaattagaatcaagttaagagtaggagaat-gtcggtgtataga 10906393  T
Q  223 tgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagtt 322  Q
    ||||||  ||||||||    | |||||||||| | || || |  | ||||| |||||||||||||| ||||||| ||| ||||||||| || | ||||||    
T  10906394 tgacgacaaatgtgagaacgaggtaataagatat-aattcgctctgatgaggagaataagtatgaaagagttaacgacgatggtgaggaaggatctagtt 10906492  T
Q  323 gtaaagag 330  Q
    ||| ||||    
T  10906493 gtatagag 10906500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 18556358 - 18556753
Alignment:
Q  1 aatcaattagaagagagaaattaagatgaataggaaagcaa----ataagaggtaatagttataatctttgatgataataataatgacaggtatcgagag 96  Q
    |||| |||||||||||  |||||||||||||||||||| ||    ||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||    
T  18556358 aatcgattagaagagaccaattaagatgaataggaaagaaagcagataagaggtaatagttataatgtttgacgataataataatgactggtatcgagag 18556457  T
Q  97 aataaagccttgaattataatgaagtcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggttta 196  Q
    ||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||  | ||||||||||||||||| |||||||||||||| |    
T  18556458 aatgaaaccttgaattataatgaagtcttggtgagggaagtttatgaagtcgaaagtaatgataaagtgcgataataactttaaattagaacgaggttca 18556557  T
Q  197 gattaggagaatagttgacgtataaatgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaa 296  Q
    |||||||||||| ||| ||||||| |||| ||| |||||||||   ||||||||| ||||||||   | |||||||| | |||| |||| ||||||||||    
T  18556558 gattaggagaatggtttacgtatagatgaagatcaatgtgaggacgaagtaataaaatgtaaaggtgcattaatgag-ataatatgtat-aaggagttaa 18556655  T
Q  297 tgacaatggtgaggtagaacctagttgtaaagagggtagatgttatgataacgaataagtaaacaacttaagaccaagattgaggaatatggtatgat 394  Q
    |||| ||||| |||||||||||| |||||||| | | ||||||||||||||||||||||||||||| ||||||| |||| |||| |||||||||||||    
T  18556656 tgacgatggttaggtagaacctatttgtaaagggaggagatgttatgataacgaataagtaaacaaattaagactaagaatgagaaatatggtatgat 18556753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 23 - 394
Target Start/End: Original strand, 11097857 - 11098236
Alignment:
Q  23 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattata-atgaag 121  Q
    ||||||||||||||||   ||||||||||||| |||||||  || | ||||| ||||| |||  ||||||||||||| || ||||||||||||  || ||    
T  11097857 aagatgaataggaaagaggataagaggtaataattataatggtttacgataacaataacgactagtatcgagagaatgaaaccttgaattatatttgtag 11097956  T
Q  122 tcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataa 221  Q
    |||| |||||| ||||||  |||||| ||| ||||||  ||||| ||||||||||||| |||||||||| ||| |||||||| |||| |  || | ||||    
T  11097957 tcttagtgaggaaagtttctgaagtcaaaattaatgataaggtgagataataactttaaattagaacgaagttaagattaggggaatggaagatgcataa 11098056  T
Q  222 atgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagt 321  Q
    ||||| |  ||  ||||   ||||||||||||  |||||||   ||| |||||||||||||||||||||| |||||||| |||||||| ||| |||||||    
T  11098057 atgactacaaacatgagaacaaagtaataagagataaagtcgttttattgagaagaataagtatgaaggaattaatgacgatggtgagttaggacctagt 11098156  T
Q  322 tgtaaagaggg-------tagatgttatgataacgaataagtaaacaacttaagaccaagattgaggaatatggtatgat 394  Q
    ||||||||| |       || |||  ||||||| ||| ||||||| | |||||||| |||| ||||||||| ||||||||    
T  11098157 tgtaaagagaggagacattatatgaaatgataatgaacaagtaaatatcttaagactaagaatgaggaataaggtatgat 11098236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 23 - 323
Target Start/End: Original strand, 15872314 - 15872616
Alignment:
Q  23 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaagt 122  Q
    ||||||| |||||||||| ||||| | ||||||||||||| ||||| |||||||||||  || || ||||||||||||||  |||||||||||||||||     
T  15872314 aagatgagtaggaaagcagataagcgataatagttataatgtttgacgataataataacaaccggcatcgagagaataaaatcttgaattataatgaagc 15872413  T
Q  123 cttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaa 222  Q
    ||| |||||| ||||||  ||  || |||||| |||     || ||||||||||||| ||||| |  | ||| |||||||||||||||| || ||||| |    
T  15872414 cttagtgaggaaagtttctgatatcaaaagtactgatagaatgagataataactttaaattaggattaagttaagattaggagaatagtcgatgtataga 15872513  T
Q  223 tgacgatgaatgtgaggcaaaagtaataaga-tgtaaagtcacgtt-aatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctag 320  Q
    |||||| |||||||||   || ||||||||| | |||||||   || |||||||||||||| || ||| ||||||||||| |||||| || |||||||||    
T  15872514 tgacgacgaatgtgagaacaaggtaataagattataaagtcgtattaaatgagaagaataattacgaaagagttaatgacgatggtggggaagaacctag 15872613  T
Q  321 ttg 323  Q
    |||    
T  15872614 ttg 15872616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 23 - 323
Target Start/End: Original strand, 15889906 - 15890208
Alignment:
Q  23 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaagt 122  Q
    ||||||| ||||||| |  ||||| | ||||||||||||| |||||||||||||||||  || || ||||||||||||||  |||||||||||||||||     
T  15889906 aagatgagtaggaaaccggataagcgataatagttataatgtttgatgataataataacaaccggcatcgagagaataaaatcttgaattataatgaagc 15890005  T
Q  123 cttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaa 222  Q
    ||| |||||| ||||||  || ||| |||||| |||     || ||||||||||||| ||||| |  | ||| ||||||||| |||||| || ||||| |    
T  15890006 cttagtgaggaaagtttctgatgtcaaaagtactgatagaatgagataataactttaaattaggattaagttaagattaggaaaatagtcgatgtataga 15890105  T
Q  223 tgacgatgaatgtgaggcaaaagtaataaga-tgtaaagtcacgtt-aatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctag 320  Q
    |||||| |||||||||   || ||||||||| | |||||||   || |||||||||||||| || ||| ||||||||||| |||||| || |||||||||    
T  15890106 tgacgacgaatgtgagaacaaggtaataagattataaagtcgttttaaatgagaagaataattacgaaagagttaatgacgatggtggggaagaacctag 15890205  T
Q  321 ttg 323  Q
    |||    
T  15890206 ttg 15890208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 23 - 330
Target Start/End: Complemental strand, 12229546 - 12229238
Alignment:
Q  23 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaagt 122  Q
    ||||||| ||||||||   ||||| ||||||||||||||| ||||| |||||||||||  || ||||| || | ||||||  ||||||||||| ||||||    
T  12229546 aagatgagtaggaaagaggataagcggtaatagttataatgtttgacgataataataacaaccggtattgaaaaaataaaatcttgaattatactgaagt 12229447  T
Q  123 cttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaa 222  Q
    ||| |||| | ||||||  |||| |||||||| |||  | ||| ||||||||||| | ||||| |  | ||| |||||||||||||||| || ||||| |    
T  12229446 cttagtgaagaaagtttctgaagccgaaagtactgataaagtgagataataacttcaaattaggattaagttaagattaggagaatagtcgatgtataga 12229347  T
Q  223 tgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgtt-aatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagt 321  Q
    ||||||  ||||||||   || | |||||||| |||||||   || |||||||||||||| || ||| | ||||||||| |||||| || ||||||||||    
T  12229346 tgacgacaaatgtgagaacaaggaaataagatttaaagtcgttttaaatgagaagaataattacgaaagcgttaatgacgatggtgtggaagaacctagt 12229247  T
Q  322 tgtaaagag 330  Q
    |||| ||||    
T  12229246 tgtatagag 12229238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 23 - 208
Target Start/End: Complemental strand, 11556580 - 11556395
Alignment:
Q  23 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaagt 122  Q
    ||||||||||||||||   ||||||||||||| |||||||  |||| ||||||||||| |||  |||| |||||||| || ||||||||||||||| |||    
T  11556580 aagatgaataggaaagaggataagaggtaataattataatggttgacgataataataacgactagtattgagagaatgaaaccttgaattataatgtagt 11556481  T
Q  123 cttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaat 208  Q
    ||| |||||| |||||   |||||||||| ||||||   |||| ||||||||||||| ||||||| || ||| |||||||| ||||    
T  11556480 cttagtgaggaaagttgctgaagtcgaaattaatgatatggtgagataataactttaaattagaatgaagttaagattaggggaat 11556395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 44 - 208
Target Start/End: Original strand, 18220279 - 18220443
Alignment:
Q  44 aagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaagtcttggtgagggaagtttagga 143  Q
    |||||||||||||||||||  |||   |||||||||| |||  ||||||||||||| || ||||||||||||||| |||||| |||||  |||||   ||    
T  18220279 aagaggtaatagttataatggttgtcaataataataacgactagtatcgagagaatgaaaccttgaattataatgtagtcttagtgagaaaagttgttga 18220378  T
Q  144 agtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaat 208  Q
    |||||||| ||||||  ||||| ||||||||||||| ||||||| || ||| |||||||| ||||    
T  18220379 agtcgaaattaatgataaggtgagataataactttatattagaatgaagttaagattaggggaat 18220443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 23 - 322
Target Start/End: Original strand, 16284496 - 16284796
Alignment:
Q  23 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaa-ttataatgaag 121  Q
    |||||| ||||||||  | |||||| |||| | ||||||| |||| ||||||  |||| ||| | ||||||||||||||  |||| || |||||||||||    
T  16284496 aagatgtataggaaataagataagacgtaaaatttataatgtttgttgataaatataacgactgatatcgagagaataactccttaaaattataatgaag 16284595  T
Q  122 tcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataa 221  Q
    | || |||||| |||||   ||||| |||||||| ||  || || ||||||||||||| | ||||| || ||| |  ||||||||||  |    |||||     
T  16284596 ttttagtgaggaaagttgttgaagttgaaagtaacgataagatgagataataactttaaaatagaatgaagttaaagttaggagaatgatcattgtatag 16284695  T
Q  222 atgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagt 321  Q
    | ||||| |||| ||||    | | |||||||| ||||||  | ||| || |||||||||||||||| ||||||||| ||||||||||| ||||||||||    
T  16284696 acgacgacgaatttgagaacgaggaaataagatataaagtttctttattgggaagaataagtatgaaagagttaatggcaatggtgagggagaacctagt 16284795  T
Q  322 t 322  Q
    |    
T  16284796 t 16284796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 390 - 476
Target Start/End: Original strand, 18556956 - 18557042
Alignment:
Q  390 atgatgagtaatgttatgtaaacttataagtacgcgcggtaaaagttaatgaggtctatatcataaagatgctgagagtgatgatgt 476  Q
    ||||||||||||||||||||||| ||||| |||| ||| | |||||| ||||||| | |||||||||||||  ||||||||||||||    
T  18556956 atgatgagtaatgttatgtaaacctataaatacgtgcgatgaaagttgatgaggtttgtatcataaagatgaagagagtgatgatgt 18557042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 201
Target Start/End: Original strand, 30275514 - 30275693
Alignment:
Q  22 taagatgaataggaaagcaaataagaggtaatagt-tataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaa 120  Q
    |||||||||||  |||| | ||||||| ||||||| |||||| ||||| ||||||||||| ||| |||| ||||| | |||| || | || |||||||||    
T  30275514 taagatgaataaaaaagaagataagagataatagtatataatgtttgacgataataataacgactggtaacgagatattaaaaccctaaaatataatgaa 30275613  T
Q  121 gtcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagatta 201  Q
    || || ||| || ||||| | || ||||||||||||||  |||||  |||||||||||| ||||||| || ||| ||||||    
T  30275614 gttttagtg-ggaaagttgatgacgtcgaaagtaatgataaggtgaaataataactttaaattagaatgaagttaagatta 30275693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 322
Target Start/End: Original strand, 18231190 - 18231242
Alignment:
Q  270 tgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagtt 322  Q
    ||||||||||||||||||| || |||||| ||||||||||| |||||||||||    
T  18231190 tgagaagaataagtatgaaagaattaatggcaatggtgaggaagaacctagtt 18231242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 145; Significance: 4e-76; HSPs: 3)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 222 - 394
Target Start/End: Original strand, 13772 - 13944
Alignment:
Q  222 atgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagt 321  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |    
T  13772 atgacgatgaatgtgaggacaaagtaataagatgtaaagtcacgttaatgagaaaaataagtatgaaggagttaatgacaatggtgaggtagaacctact 13871  T
Q  322 tgtaaagagggtagatgttatgataacgaataagtaaacaacttaagaccaagattgaggaatatggtatgat 394  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13872 tgtaaatagagtagatgttatgataacgaataagtaaacaacttaagaccaagaatgaggaatatggtatgat 13944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 12 - 126
Target Start/End: Original strand, 13649 - 13763
Alignment:
Q  12 agagagaaattaagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaat 111  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||| ||||||||    
T  13649 agagagaaattaagatgaatagaaaagcaaataagaggtaatagttataatctttggcgataataataatgaccggtatcgagagaataaaaccttgaat 13748  T
Q  112 tataatgaagtcttg 126  Q
    |||||||||||||||    
T  13749 tataatgaagtcttg 13763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 390 - 477
Target Start/End: Original strand, 14146 - 14233
Alignment:
Q  390 atgatgagtaatgttatgtaaacttataagtacgcgcggtaaaagttaatgaggtctatatcataaagatgctgagagtgatgatgtc 477  Q
    |||||||| ||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  14146 atgatgagcaatgttatgtaaacttataagtacgtgcggtgaaagttgatgaggtctatatcataaagatgctgagagtgatgatgtc 14233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 23 - 330
Target Start/End: Original strand, 13477125 - 13477432
Alignment:
Q  23 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaagt 122  Q
    ||||||||||||||||   | ||||| |||||||||||||  ||||  ||||||||||||||  ||||||||||||| || |||| |||||||||| |||    
T  13477125 aagatgaataggaaagaggacaagagataatagttataatggttgacaataataataatgactagtatcgagagaatgaaaccttaaattataatgtagt 13477224  T
Q  123 cttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaa 222  Q
    ||| |||||| |||||   |||||| ||| ||||||  ||||| |||||||| ||||  ||||||||| ||| |||||||| |||| |   ||| ||  |    
T  13477225 cttagtgaggaaagttgctgaagtccaaattaatgataaggtgagataataagtttaatttagaacgaagttaagattaggggaatggacaacgcatgga 13477324  T
Q  223 tgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagtt 322  Q
    |||| |  ||  ||||   ||||||||||||| ||||||||  ||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  13477325 tgactacaaacatgagaacaaagtaataagatataaagtcattttattgagaagaataagtatgaaggagttaatgacgatggtgaggtaggacctagtt 13477424  T
Q  323 gtaaagag 330  Q
    ||||||||    
T  13477425 gtaaagag 13477432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 95 - 325
Target Start/End: Original strand, 37945357 - 37945587
Alignment:
Q  95 agaataaagccttgaattataatgaagtcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtt 194  Q
    ||||||||  ||||||||||||||||||||| |||||| |||||   ||||| |||||||||||  ||||| |||||||||||||  ||||||  | |||    
T  37945357 agaataaaatcttgaattataatgaagtcttagtgaggaaagttgctgaagttgaaagtaatgaaaaggtgagataataactttaatttagaatcaagtt 37945456  T
Q  195 tagattaggagaatagttgacgtataaatgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagtt 294  Q
     |||||||||||||  ||| |||||| |||||||||||||||||    | |||||||||| || |||| | ||  |||| ||||| |||||||| |||||    
T  37945457 aagattaggagaatgattggcgtatagatgacgatgaatgtgagaacgaggtaataagatatatagtcgctttggtgagcagaatgagtatgaaagagtt 37945556  T
Q  295 aatgacaatggtgaggtagaacctagttgta 325  Q
    |||||  ||||||||| ||||||||||||||    
T  37945557 aatgatgatggtgaggaagaacctagttgta 37945587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 31 - 329
Target Start/End: Complemental strand, 20026628 - 20026330
Alignment:
Q  31 taggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaagtcttggtga 130  Q
    |||||||| | ||||||  || |||||||||  || || ||| |||||||||||  |||||||||||||||| |||| ||||| |||| |||| | ||||    
T  20026628 taggaaagaagataagaaatattagttataaggttagacgatgataataatgaccagtatcgagagaataaaacctttaattagaatggagtcgtagtga 20026529  T
Q  131 gggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaatgacgatg 230  Q
    || |||||   |||||||||| ||||||   |||| |||||||||| || ||||||| || ||| |||||||| |||| |  || | ||| ||||  |||    
T  20026528 ggaaagttgttgaagtcgaaattaatgatagggtgagataataactctaaattagaatgaagttaagattaggggaatggacgatgcatatatgaatatg 20026429  T
Q  231 aatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagttgtaaaga 329  Q
    ||| ||||   ||| ||||||||| |||| |    ||| |||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||    
T  20026428 aatatgagaacaaattaataagatataaattatttttattgagaagaatcagtatgaaggagttaatgacgatggtgaggtaggacctagttgtaaaga 20026330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 22614568 - 22614683
Alignment:
Q  23 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaagt 122  Q
    ||||||||||||||||   |||||||||||||||||||||  || | ||||||||||| |||  ||||||||||||| || ||||||||||||||| |||    
T  22614568 aagatgaataggaaagaggataagaggtaatagttataatggttaacgataataataaagactagtatcgagagaatgaaaccttgaattataatgtagt 22614667  T
Q  123 cttggtgagggaagtt 138  Q
    ||| |||||| |||||    
T  22614668 cttagtgaggaaagtt 22614683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 394
Target Start/End: Complemental strand, 16060945 - 16060786
Alignment:
Q  243 aagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgagg-tagaacctagttgtaaagagggtag------ 335  Q
    |||||||||||| |||||||   ||| |||| |||||||||| ||| |||||||| ||||||||||||  | ||||||| | || |||| | ||          
T  16060945 aagtaataagatataaagtcgttttattgaggagaataagtaggaaagagttaataacaatggtgaggaaaaaacctagatatatagagcggagactttg 16060846  T
Q  336 -atgttatgataacgaataagtaaacaacttaagaccaagattgaggaatatggtatgat 394  Q
     |||| |||||| |||||||| ||||||||| ||||||||| ||||||||| ||||||||    
T  16060845 catgtaatgatagcgaataagaaaacaacttgagaccaagaatgaggaatagggtatgat 16060786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 319
Target Start/End: Complemental strand, 48377248 - 48377172
Alignment:
Q  243 aagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaaccta 319  Q
    |||||||||||| |||||||   ||| |||| |||||||||| ||| |||||||| ||||| |||||| | ||||||    
T  48377248 aagtaataagatataaagtcgttttattgaggagaataagtaggaaagagttaataacaattgtgaggaaaaaccta 48377172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 3e-40; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 25 - 208
Target Start/End: Complemental strand, 13937578 - 13937394
Alignment:
Q  25 gatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtat-cgagagaataaagccttgaattataatgaagtc 123  Q
    ||||||||||||||    |||||||||||||||||| | ||||||||||||||||| ||| | ||| ||||  |||||| ||||||||||||||||||||    
T  13937578 gatgaataggaaagagggtaagaggtaatagttatactatttgatgataataataacgaccgatattcgaggaaataaaaccttgaattataatgaagtc 13937479  T
Q  124 ttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaat 208  Q
    || |||||||||||||  |||||||||||||||||  ||||| ||||||||||||| ||||||| || ||| ||||||| |||||    
T  13937478 ttagtgagggaagttttcgaagtcgaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaagaat 13937394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 24831487 - 24831668
Alignment:
Q  22 taagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaag 121  Q
    |||||||||||||||||   |||||||||||||||||||||  ||||  ||||||||||||||  |||||||||||||||| ||||||||||||||| ||    
T  24831487 taagatgaataggaaagaggataagaggtaatagttataatggttgacaataataataatgactagtatcgagagaataaaaccttgaattataatgtag 24831586  T
Q  122 tcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattagg 203  Q
    |||| |||| | |||||   |||||| ||| ||||||  ||||| |||| |||||||| |||||||||  ||| ||||||||    
T  24831587 tcttagtgaagaaagttgttgaagtcaaaattaatgataaggtgagatagtaactttaaattagaacggagttaagattagg 24831668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 23 - 238
Target Start/End: Complemental strand, 24759423 - 24759208
Alignment:
Q  23 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaagt 122  Q
    |||||||||||||| | | ||||||||||||||||||||| ||||| ||||||| ||| |||  |||||||||||||||  |||| ||||||||||||||    
T  24759423 aagatgaataggaaggaagataagaggtaatagttataatttttgacgataatattaacgacctgtatcgagagaataactccttaaattataatgaagt 24759324  T
Q  123 cttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaa 222  Q
    |||  ||||| |||||   |||||||||||||| ||  || || ||||||||||||| | ||||| |||||| |  |||||| ||| || || ||||| |    
T  24759323 cttactgaggaaagttgctgaagtcgaaagtaacgataagatgagataataactttaaaatagaatgaggttaaagttaggataatggtcgatgtataga 24759224  T
Q  223 tgacgatgaatgtgag 238  Q
    |||| | |||||||||    
T  24759223 tgactacgaatgtgag 24759208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 23 - 325
Target Start/End: Original strand, 23960375 - 23960682
Alignment:
Q  23 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaagt 122  Q
    |||||||||| ||| | | ||||||||||||||||||||  |||||||||||| |||| ||| |||||||||| |||||  |||| | |||||||| |||    
T  23960375 aagatgaataagaaggaagataagaggtaatagttataaagtttgatgataattataacgaccggtatcgagaaaataagaccttaagttataatggagt 23960474  T
Q  123 cttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagt-----tgacgt 217  Q
     |||| |||| |||||   || ||| |||||||||   ||||| ||||||||||||| ||||||| || ||| || || |  | || ||     | || |    
T  23960475 tttggcgaggaaagttgctgacgtcaaaagtaatggtaaggtgagataataactttaaattagaatgaagttaaggttggaggcatggtcaacgtaacat 23960574  T
Q  218 ataaatgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacc 317  Q
    ||| | |||||||||||||||    | |||||||||| || |||||  ||||||||||||||||||| |   ||||||||||| ||||||||| ||||||    
T  23960575 atagaagacgatgaatgtgagagcgaggtaataagatatagagtcaatttaatgagaagaataagtacggtagagttaatgacgatggtgaggaagaacc 23960674  T
Q  318 tagttgta 325  Q
    ||||||||    
T  23960675 tagttgta 23960682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 330
Target Start/End: Complemental strand, 17458356 - 17458283
Alignment:
Q  256 taaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagttgtaaagag 330  Q
    ||||||| | |||||| ||||||||||||  ||| |||||||||| ||||||||| |||||||||||||| ||||    
T  17458356 taaagtcgctttaatgggaagaataagtacaaag-agttaatgacgatggtgagggagaacctagttgtatagag 17458283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 13936122 - 13936063
Alignment:
Q  266 ttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagttgta 325  Q
    ||||||||||  ||||||| ||| ||||||||||| |||||| || ||||||||||||||    
T  13936122 ttaatgagaaagataagtaagaaagagttaatgacgatggtggggaagaacctagttgta 13936063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 17458561 - 17458485
Alignment:
Q  46 gaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaagt 122  Q
    ||||||||| ||||||| |||||  |||||||||| ||  | ||||||||||||||   ||| ||||||||||||||    
T  17458561 gaggtaataattataatatttgacaataataataacgatcgatatcgagagaataacttcttaaattataatgaagt 17458485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 23 - 238
Target Start/End: Complemental strand, 1917 - 1702
Alignment:
Q  23 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaagt 122  Q
    |||||||||||||| | | ||||||||||||||||||||| ||||| ||||||| ||| |||  |||||||||||||||  |||| ||||||||||||||    
T  1917 aagatgaataggaaggaagataagaggtaatagttataatttttgacgataatattaacgacctgtatcgagagaataactccttaaattataatgaagt 1818  T
Q  123 cttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaa 222  Q
    |||  ||||| |||||   |||||||||||||| ||  || || ||||||||||||| | ||||| |||||| |  |||||| ||| || || ||||| |    
T  1817 cttactgaggaaagttgctgaagtcgaaagtaacgataagatgagataataactttaaaatagaatgaggttaaagttaggataatggtcgatgtataga 1718  T
Q  223 tgacgatgaatgtgag 238  Q
    |||| | |||||||||    
T  1717 tgactacgaatgtgag 1702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 31 - 307
Target Start/End: Complemental strand, 10740 - 10463
Alignment:
Q  31 taggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaagtcttggtga 130  Q
    |||||||||  ||||| ||||||||||||||| ||||| |||||||||||  |||| ||| |||||||||||  |||||||||||||||||  || ||||    
T  10740 taggaaagcggataagcggtaatagttataatgtttgacgataataataacaacagatattgagagaataaaatcttgaattataatgaagcattagtga 10641  T
Q  131 gggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagatta-gaacgaggtttagattaggagaatagttgacgtataaatgacgat 229  Q
    || ||||||  |||||  |||||||||   | ||| ||||||| ||||| |||| ||   ||||| |||||||||||||||| || ||||| |||||||     
T  10640 ggaaagtttctgaagttaaaagtaatggtaaagtgagataatagctttaaattaggattaaggttaagattaggagaatagtcgatgtatagatgacgac 10541  T
Q  230 gaatgtgaggcaaaagtaataagatgtaaagtcacgtt-aatgagaagaataagtatgaaggagttaatgacaatggtg 307  Q
    |||||||||   || |||||||||| |||||||   || ||| |||||||||| || ||| ||||||||||| ||||||    
T  10540 gaatgtgagaacaaggtaataagatataaagtcgttttaaattagaagaataattacgaa-gagttaatgacgatggtg 10463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 48 - 320
Target Start/End: Complemental strand, 14848 - 14575
Alignment:
Q  48 ggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaagtcttggtgagggaagtttaggaagtc 147  Q
    ||||||||||||||| ||||| |||||||||||  || |||| ||||||||||||  |||||||||||| |||| ||| |||||| || |||  ||||||    
T  14848 ggtaatagttataatgtttgacgataataataacaactggtaacgagagaataaaatcttgaattataaagaagccttagtgaggaaattttctgaagtc 14749  T
Q  148 gaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaatgacgatgaatgtgaggcaaaagta 247  Q
     |||||| |||  | ||| |||||||| |||| ||||| |  | ||| |||||||||||| ||| || ||||| ||||||| |||||||||   || |||    
T  14748 aaaagtattgataaagtgagataataaatttaaattaggattaagttaagattaggagaaaagtcgatgtatagatgacgacgaatgtgagaacaaggta 14649  T
Q  248 ataagatgtaaagtcacgtt-aatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctag 320  Q
    ||||||| |||||||   || ||||||||||||||  | ||| |||||||| || |||||| || |||||||||    
T  14648 ataagatataaagtcgttttaaatgagaagaataatcacgaaagagttaataacgatggtggggaagaacctag 14575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1001 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 1680 - 1544
Alignment:
Q  22 taagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaag 121  Q
    |||||||||||||||||  ||||||||||||||||||||||  |||| ||||||||||| |||  ||||||||||| | || ||||||||||||||| ||    
T  1680 taagatgaataggaaagagaataagaggtaatagttataatggttgacgataataataacgactagtatcgagagattgaaaccttgaattataatgtag 1581  T
Q  122 tcttggtgagggaagtttaggaagtcgaaagtaatga 158  Q
    ||||||||||| |||||   |||||||||| ||||||    
T  1580 tcttggtgaggaaagttgttgaagtcgaaattaatga 1544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 47 - 322
Target Start/End: Original strand, 3155 - 3430
Alignment:
Q  47 aggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaagtcttggtgagggaagtttaggaagt 146  Q
    ||||||||||||||||  |||| ||||||||||||||| |||||| ||||||| || |||||||||||| ||||||||   ||||| |||||   |||||    
T  3155 aggtaatagttataatggttgacgataataataatgactggtatcaagagaatgaaaccttgaattatagtgaagtctcaatgaggaaagttgttgaagt 3254  T
Q  147 cgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaatgacgatgaatgtgaggcaaaagt 246  Q
    | ||  ||||||  ||||| ||||||||||||| |||||||||| ||| |||||||| |||| |  || | ||| ||||| |   | || ||   |||||    
T  3255 ctaatttaatgataaggtgagataataactttaaattagaacgaagttaagattaggggaatggacgatgcatagatgactacacacgtaagaacaaagt 3354  T
Q  247 aataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagtt 322  Q
    |||||||| |||  ||   ||| |||| ||||| |||||||| |||||||||  |||||||||| |||||||||||    
T  3355 aataagatataagatcgttttattgaggagaatgagtatgaaagagttaatggaaatggtgaggaagaacctagtt 3430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 42 - 322
Target Start/End: Complemental strand, 29294497 - 29294217
Alignment:
Q  42 ataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaattataatgaagtcttggtgagggaagtttag 141  Q
    |||||||||||||||||||||  |||| ||||||||||| ||| |||||||||||||| || |||  ||||||| ||||||||  |||||| |||||       
T  29294497 ataagaggtaatagttataatgattgacgataataataacgaccggtatcgagagaatgaaacctcaaattatagtgaagtctcagtgaggaaagttgct 29294398  T
Q  142 gaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataaatgacgatgaatgtgaggca 241  Q
    |||||| ||  |||| |  ||||| ||||||||||||| ||||| |||| ||| ||| |||| |||| |  || | | | ||||| | | | |||||       
T  29294397 gaagtcaaatttaattataaggtgagataataactttaaattaggacgaagttaagagtaggggaatggacgatgcacagatgactacgcacgtgagaac 29294298  T
Q  242 aaagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagtt 322  Q
    ||||||| ||||| |||  ||   ||| |||| |||||||||||||| ||||||||||| ||||||||| |||||||||||    
T  29294297 aaagtaacaagatataagatcgttttattgaggagaataagtatgaaagagttaatgactatggtgagggagaacctagtt 29294217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 23 - 322
Target Start/End: Complemental strand, 13221 - 12921
Alignment:
Q  23 aagatgaataggaaagcaaataagaggtaatagttataatctttgatgataataataatgacaggtatcgagagaataaagccttgaa-ttataatgaag 121  Q
    |||||| ||||||||  | |||||| |||| | ||||||| |||||||||||  |||| ||| | ||||||||||||||  |||| || |||||||||||    
T  13221 aagatgtataggaaataagataagacgtaacatttataatgtttgatgataaatataacgactgatatcgagagaataactccttaaaattataatgaag 13122  T
Q  122 tcttggtgagggaagtttaggaagtcgaaagtaatgacgaggtgcgataataactttagattagaacgaggtttagattaggagaatagttgacgtataa 221  Q
    | || |||||| |||||   ||||| |||||||| ||  || || ||||||||||||| | ||||| || ||| |  ||||||||||  |    |||||     
T  13121 ttttagtgaggaaagttgttgaagttgaaagtaacgataagatgagataataactttaaaatagaatgaagttaaagttaggagaatgatcattgtatag 13022  T
Q  222 atgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagt 321  Q
    | ||||| |||| ||||    | | |||||||| ||||||  | ||| || |||||||||||||||| ||||||||| ||||||||||| ||||||||||    
T  13021 acgacgacgaatttgagaacgaggaaataagatataaagtttctttattgggaagaataagtatgaaagagttaatggcaatggtgagggagaacctagt 12922  T
Q  322 t 322  Q
    |    
T  12921 t 12921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 216 - 394
Target Start/End: Complemental strand, 131240 - 131056
Alignment:
Q  216 gtataaatgacgatgaatgtgaggcaaaagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaa 315  Q
    ||||||||||||| ||| |||||  | |||||||||||| |||||||   ||| ||||||||||||||| ||| |||||||| ||||| |||||| | ||    
T  131240 gtataaatgacgacgaacgtgaga-acaagtaataagatataaagtcgttttattgagaagaataagtaggaaagagttaataacaattgtgaggaaaaa 131142  T
Q  316 cctagttgtaaagagggtag-------atgttatgataacgaataagtaaacaacttaagaccaagattgaggaatatggtatgat 394  Q
    ||||| | || |||| | ||       |||| |||||| |||||||| ||||||||| ||||| ||| ||||||||| ||||||||    
T  131141 cctagatatatagagcggagagtttgcatgtaatgatagcgaataagaaaacaacttgagaccgagaatgaggaatagggtatgat 131056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 243 - 394
Target Start/End: Original strand, 13881940 - 13882098
Alignment:
Q  243 aagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagttgtaaagagggtag------- 335  Q
    |||||||||||| |||||||   ||| |||| |||||||||| ||| |||||||| ||||| |||||| | ||||||| | || |||| | ||           
T  13881940 aagtaataagatataaagtcgttttattgaggagaataagtaggaaagagttaataacaattgtgaggaaaaacctagatatatagagcggagactttgc 13882039  T
Q  336 atgttatgataacgaataagtaaacaacttaagaccaagattgaggaatatggtatgat 394  Q
    |||| |||||| |||||||| ||||||||| ||||||||| ||||||||| ||||||||    
T  13882040 atgtaatgatagcgaataagaaaacaacttgagaccaagaatgaggaatagggtatgat 13882098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1269 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 394
Target Start/End: Complemental strand, 310 - 252
Alignment:
Q  336 atgttatgataacgaataagtaaacaacttaagaccaagattgaggaatatggtatgat 394  Q
    |||| |||||| |||||||| ||||||||| ||||||||| ||||||||||| ||||||    
T  310 atgtaatgatagcgaataagaaaacaacttgagaccaagaatgaggaatatgatatgat 252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 243 - 394
Target Start/End: Complemental strand, 29490 - 29331
Alignment:
Q  243 aagtaataagatgtaaagtcacgttaatgagaagaataagtatgaaggagttaatgacaatggtgaggtagaacctagttgtaaagagggtag------- 335  Q
    |||||||||||| |||||||   ||| |||| |||||||||| ||| |||||||| ||||| |||||| | ||||||| | || |||| | ||           
T  29490 aagtaataagatataaagtcgttttattgaggagaataagtaggaaagagttaataacaattgtgaggaaaaacctagatatatagagcggagactttgc 29391  T
Q  336 atgttatgataacgaataag-taaacaacttaagaccaagattgaggaatatggtatgat 394  Q
    |||| |||||| ||||||||  ||||||||| ||||||||| ||||||||| ||||||||    
T  29390 atgtaatgatagcgaataagaaaaacaacttgagaccaagaatgaggaatagggtatgat 29331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 52687 - 52635
Alignment:
Q  86 ggtatcgagagaataaagccttgaattataatgaagtcttggtgagggaagtt 138  Q
    ||||||||||||||||| |||| |||||||||| |||||| |||||| |||||    
T  52687 ggtatcgagagaataaaaccttaaattataatggagtcttagtgaggaaagtt 52635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 87135 - 87187
Alignment:
Q  86 ggtatcgagagaataaagccttgaattataatgaagtcttggtgagggaagtt 138  Q
    ||||||||||||||||| |||| |||||||||| |||||| | |||| |||||    
T  87135 ggtatcgagagaataaaaccttaaattataatggagtcttagagaggaaagtt 87187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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