View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15438_high_4 (Length: 482)
Name: NF15438_high_4
Description: NF15438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15438_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 32248328 - 32248619
Alignment:
| Q |
1 |
tatatttaaaccatgtccattttgacttttgcttaaatttaagacggagtagtactatcataccctgtagaggagaacatattcagcactgaggcgtaaa |
100 |
Q |
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||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32248328 |
tatatttaaaccaagtacattttgacttttgcttaaatttaagacggagtagtactatcataccctgtagaggagaacatattcagcactgaggcgtaaa |
32248427 |
T |
|
| Q |
101 |
ttgcgaaggattgggagggttaaactgttagcatcgctgatgcgacctgcacgtgggttgtagagatctgcacgtgcagggcgagcgatgttctccacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32248428 |
ttgcgaaggattgggagggttaaactgttagcatcgctgatgcgacctgcacgtgggttgtagagatctgcacgtgcagggcgagcgatgttctccacaa |
32248527 |
T |
|
| Q |
201 |
tccttaaactgcagatagtttcttccaaaccattttgactatgtccatggtgtcttgggtctcgttctctttcttcctggctatgtctggga |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
32248528 |
tccttaaactgcagatagtttcttccaaaccattttgactatgtccgctgtgtcttgggtctcgttctctttcttcctggccatgtccggga |
32248619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 236 - 465
Target Start/End: Original strand, 32242909 - 32243138
Alignment:
| Q |
236 |
tgactatgtccatggtgtcttgggtctcgttctctttcttcctggctatgtctgggatatcttgtttcccattgttcttcctcactaggtttctgatgcc |
335 |
Q |
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||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32242909 |
tgactatgtccgggacgtcttgggtctcgttctctttcttcctggctatgtctgggatatcttgtttcccattgttcttcctcactaggtttctgatgcc |
32243008 |
T |
|
| Q |
336 |
ctggtctacgaatgtgtcttggtctccgttcatcttcttcctcctcgtgacttctttcgtattcttcatcttcttgctgccactcagggctgatgatgct |
435 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32243009 |
ctggtctacgaatgtgtcttggtctccgttcatcttcttcctcctcgtgacttctttcgtattcttcatcttcttgctgccactcagggctgatgatgct |
32243108 |
T |
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| Q |
436 |
gagaccgccctctactctcacgatttggct |
465 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
32243109 |
gagaccgccctctactctcacgatttggct |
32243138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 236 - 465
Target Start/End: Original strand, 32248647 - 32248876
Alignment:
| Q |
236 |
tgactatgtccatggtgtcttgggtctcgttctctttcttcctggctatgtctgggatatcttgtttcccattgttcttcctcactaggtttctgatgcc |
335 |
Q |
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||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32248647 |
tgactatgtccgggacgtcttgggtctcgttctctttcttcctggctatgtctgggatatcttgtttcccattgttcttcctcactaggtttctgatgcc |
32248746 |
T |
|
| Q |
336 |
ctggtctacgaatgtgtcttggtctccgttcatcttcttcctcctcgtgacttctttcgtattcttcatcttcttgctgccactcagggctgatgatgct |
435 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32248747 |
ctggtctacgaatgtgtcttggtctccgttcatcttcttcctcctcgtgacttctttcgtattcttcatcttcttgctgccactcagggctgatgatgct |
32248846 |
T |
|
| Q |
436 |
gagaccgccctctactctcacgatttggct |
465 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
32248847 |
gagaccgccctctactctcacgatttggct |
32248876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 32242497 - 32242733
Alignment:
| Q |
1 |
tatatttaaaccatgtccattttgacttttgcttaaatttaagacggagtagtactat---cataccctgtagaggagaacatattcagcactgaggcgt |
97 |
Q |
| |
|
||||||||||||| | |||||| ||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
32242497 |
tatatttaaaccaaatacattttaacttttgcttaaatttaagacggagtagtgctatacacataccctatagaggagaacatattcagcactgaggcgt |
32242596 |
T |
|
| Q |
98 |
aaattgcgaaggattgggagggttaaactgttagcatcgctgatgcgacctgcacgtgggttgtagagatctgcacgtgcagggcgagcgatgttctcca |
197 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32242597 |
aaattgcggaggattgggagagttaaactgttaacatcactgatgcgacctgcacgtgggttgtagagatctgcatgtgcagggcgagcgatgttctcca |
32242696 |
T |
|
| Q |
198 |
caatccttaaactgcagatagtttcttccaaaccatt |
234 |
Q |
| |
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||| ||| ||||||||||||||||||||||||||| |
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| T |
32242697 |
caagtcttgcactgcagatagtttcttccaaaccatt |
32242733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 59 - 234
Target Start/End: Original strand, 32253130 - 32253305
Alignment:
| Q |
59 |
cataccctgtagaggagaacatattcagcactgaggcgtaaattgcgaaggattgggagggttaaactgttagcatcgctgatgcgacctgcacgtgggt |
158 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
32253130 |
cataccctgtagaggagaacatattcggcactgaggcgtaaattgcggaggattgggagggttaaactgttaacatcactgatgcgacctgcacgtgggt |
32253229 |
T |
|
| Q |
159 |
tgtagagatctgcacgtgcagggcgagcgatgttctccacaatccttaaactgcagatagtttcttccaaaccatt |
234 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
32253230 |
tgtagagatctgcatgtgcagggcgagcgatgttctccacaagtcttgcactgcagatagtttcttccaaaccatt |
32253305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 339 - 465
Target Start/End: Original strand, 32253536 - 32253662
Alignment:
| Q |
339 |
gtctacgaatgtgtcttggtctccgttcatcttcttcctcctcgtgacttctttcgtattcttcatcttcttgctgccactcagggctgatgatgctgag |
438 |
Q |
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||||| ||| |||||||| ||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32253536 |
gtctaagaaggtgtcttgatctcccttcatcttcttcctcctcgggacttctttcatattcttcatcttcttgctgccactcaggactgatgatgctgag |
32253635 |
T |
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| Q |
439 |
accgccctctactctcacgatttggct |
465 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
32253636 |
accgccctctactctcacgatttggct |
32253662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 61 - 234
Target Start/End: Complemental strand, 30605136 - 30604963
Alignment:
| Q |
61 |
taccctgtagaggagaacatattcagcactgaggcgtaaattgcgaaggattgggagggttaaactgttagcatcgctgatgcgacctgcacgtgggttg |
160 |
Q |
| |
|
|||||||||||||| || ||||| |||| || ||||||||||| ||||||||||||||||||||||| | |||||| || || |||||||||||| |
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| T |
30605136 |
taccctgtagaggactacgtattcggcaccaagacgtaaattgcggaggattgggagggttaaactgttgacggtgctgattcgtccggcacgtgggttg |
30605037 |
T |
|
| Q |
161 |
tagagatctgcacgtgcagggcgagcgatgttctccacaatccttaaactgcagatagtttcttccaaaccatt |
234 |
Q |
| |
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||||| ||||||||||||||| |||| |||||||| |||| | ||||||||||||||||||||||||||| |
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| T |
30605036 |
tagaggtctgcacgtgcagggtgagctatgttctcgcgaatcttcgcactgcagatagtttcttccaaaccatt |
30604963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 308
Target Start/End: Original strand, 32253412 - 32253469
Alignment:
| Q |
251 |
tgtcttgggtctcgttctctttcttcctggctatgtctgggatatcttgtttcccatt |
308 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||| ||||| ||||| ||||||| |
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| T |
32253412 |
tgtcttgggtctcgctctctttcttcctggctatgtccgggatgtcttggatcccatt |
32253469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 308
Target Start/End: Original strand, 32242825 - 32242897
Alignment:
| Q |
236 |
tgactatgtccatggtgtcttgggtctcgttctctttcttcctggctatgtctgggatatcttgtttcccatt |
308 |
Q |
| |
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||||||||||| | ||||||||||||| |||||||||||||||||||||| ||||| ||||| ||||||| |
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| T |
32242825 |
tgactatgtccgggacgtcttgggtctcgctctctttcttcctggctatgtccgggatgtcttggatcccatt |
32242897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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