View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15438_high_5 (Length: 388)
Name: NF15438_high_5
Description: NF15438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15438_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 177364 - 177139
Alignment:
| Q |
14 |
tactctaagctaaatcagtcaactgtattgttgacttcattattctgatctggtaataatcctatttattttttatgatttgagcacaaattaaaattca |
113 |
Q |
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| T |
177364 |
tactctaagctaaatcagtcaactgtattgttgacttcattattctgatctggtaataatcctatttattttttatgatttgagcacaaattacaattca |
177265 |
T |
|
| Q |
114 |
aacacaaatgaagcataagtaagaacctagaataaagcactgcaatcatgaacaaagacagattatagttggtaccatgtgagggcttgaccaacttcta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
177264 |
aacacaaatgaagcataagtaagaacctagaataaagcactgcaatcatgaacaaagacagattatagttggtaccatgtgagggcttgaccaacttcta |
177165 |
T |
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| Q |
214 |
ccatatgttattcttcctcttcttca |
239 |
Q |
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||||||||| |||||||||||||||| |
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| T |
177164 |
ccatatgttcttcttcctcttcttca |
177139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 267 - 327
Target Start/End: Complemental strand, 177143 - 177083
Alignment:
| Q |
267 |
cttcaaagattggcattgctaattgtaactctttcggttctcttctccaatctctcaactc |
327 |
Q |
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| T |
177143 |
cttcaaagattggcattgctaatcgtaactctttcagttctcttctccaatctctcaactc |
177083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 22295112 - 22295156
Alignment:
| Q |
28 |
tcagtcaactgtattgttgacttcattattctgatctggtaataa |
72 |
Q |
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| T |
22295112 |
tcagtcaactgaattgttgacttgattattgtgatctggtaataa |
22295156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 34695139 - 34695179
Alignment:
| Q |
14 |
tactctaagctaaatcagtcaactgtattgttgacttcatt |
54 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||| |
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| T |
34695139 |
tactgtaagctaactcagtcaactgtattgttgacttcatt |
34695179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 34717551 - 34717591
Alignment:
| Q |
14 |
tactctaagctaaatcagtcaactgtattgttgacttcatt |
54 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||| |
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| T |
34717551 |
tactgtaagctaactcagtcaactgtattgttgacttcatt |
34717591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 13646076 - 13646032
Alignment:
| Q |
28 |
tcagtcaactgtattgttgacttcattattctgatctggtaataa |
72 |
Q |
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||||||||||| ||||||||||| |||||| |||||||||||||| |
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| T |
13646076 |
tcagtcaactgaattgttgacttgattattgtgatctggtaataa |
13646032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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