View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15438_low_10 (Length: 306)
Name: NF15438_low_10
Description: NF15438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15438_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 31636294 - 31636586
Alignment:
| Q |
1 |
taagctccatattaggatcagaaaaac---cacattcctttcctctgttttttccccagaatggatacttgaggtttgtgacactgtc---tccacagtc |
94 |
Q |
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| T |
31636294 |
taagctccatattaggatcagaaacactaccacaacgctcttctctgttatttccccagaatggatacttgaggtttgtgatgctgctacttccgcattc |
31636393 |
T |
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| Q |
95 |
aaaagcttcgttgcagtctgtgtaatcatcgcacatacacgttggaatattgatgatgaagatcattaaaagtatcacggagaaaaagagaaaagaagat |
194 |
Q |
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| T |
31636394 |
aaaagcttcgttgcagtctgtgtaatcattgcacatacacgttggaatattgatgatgaagatcatcaaaagcatcacggagaaaaagagaaaagaagat |
31636493 |
T |
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| Q |
195 |
ggatgaagaagaggtttcattcttgcagccgaagaaagaaagttagaataggtttagttggaaagaggaatagcactaaaagggatataaatc |
287 |
Q |
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| T |
31636494 |
ggatgaagaagaggtttcattcttgcagccgaagaaagaaagttagaataggtttagttggaaagaggaatagcactaaaagggatataaatc |
31636586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 31621299 - 31621469
Alignment:
| Q |
1 |
taagctccatattaggatcagaaaaac---cacattcctttcctctgttttttccccagaatggatacttgaggtttgtgacactgtc---tccacagtc |
94 |
Q |
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|||||||||||||||||||||||| || |||| || | ||||||| ||||||||||||||||||||||||||||||| ||| ||| || || |
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| T |
31621299 |
taagctccatattaggatcagaaacactaccacaacgctcttctctgttatttccccagaatggatacttgaggtttgtgatgctgctacttccgcattc |
31621398 |
T |
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| Q |
95 |
aaaagcttcgttgcagtctgtgtaatcatcgcacatacacgttggaatattgatgatgaagatcattaaaa |
165 |
Q |
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| T |
31621399 |
aaaagcttcgttgcagtctgtgtaatcattgcacatacacgttggaatattgatgatgaagatcatcaaaa |
31621469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 31597433 - 31597496
Alignment:
| Q |
1 |
taagctccatattaggatcagaaaaaccacattcctttcctctgttttttccccagaatggata |
64 |
Q |
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|||||| |||||||||||| |||| |||||| | |||||||| |||| ||||||||||||||| |
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| T |
31597433 |
taagcttcatattaggatcggaaacaccacaataatttcctctattttctccccagaatggata |
31597496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 151
Target Start/End: Original strand, 31616686 - 31616718
Alignment:
| Q |
119 |
atcatcgcacatacacgttggaatattgatgat |
151 |
Q |
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| T |
31616686 |
atcatcacacatacacgttggaatattgatgat |
31616718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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