View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15438_low_12 (Length: 289)

Name: NF15438_low_12
Description: NF15438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15438_low_12
NF15438_low_12
[»] scaffold0050 (1 HSPs)
scaffold0050 (1-284)||(72008-72292)


Alignment Details
Target: scaffold0050 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 72292 - 72008
Alignment:
Q  1 ctattccaccctcctttcttttcgcacgtcctattcagattataaaatccgaaaacattgagggtttatgaaggtgtttaaacatgtattggaagttgcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  72292 ctattccaccctcctttcttttcgcacgtcctattcagattataaaatctgaaaacattgagggtttatgaaggtgtttaaacatgtattggaagttgcc 72193  T
Q  101 ttaagttatagaacccgcgaaattcgataaagatatttctctgtaaaacaataacataatgtatccatttctcccgtcaattccaagctcatgcacctca 200  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||    
T  72192 ttaagttatagaacgcgcgaaattcgataaagatatttctctgtaaaacaataatataatgtatccaattttcccgtcaattccaagctcatgcacctca 72093  T
Q  201 gtatctcagccctgcataa-tcaaacaaggaaatggattcgtccacgtatttgagaagacaagattcttatttataccttctctg 284  Q
     |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  72092 ctatctcagccctgcataattcaaacaaggaaatggattcgtccacgtatttgagaagacaagattcttatttctaccgtctctg 72008  T

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