View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15438_low_17 (Length: 239)

Name: NF15438_low_17
Description: NF15438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15438_low_17
NF15438_low_17
[»] chr4 (13 HSPs)
chr4 (3-221)||(7772845-7773079)
chr4 (117-221)||(7879140-7879246)
chr4 (103-221)||(7779120-7779237)
chr4 (105-173)||(45384085-45384153)
chr4 (105-214)||(7790813-7790924)
chr4 (105-164)||(49040384-49040444)
chr4 (6-69)||(50249783-50249844)
chr4 (110-174)||(7787475-7787540)
chr4 (105-173)||(45365274-45365343)
chr4 (105-188)||(48899530-48899615)
chr4 (6-69)||(37826024-37826088)
chr4 (110-185)||(50667113-50667188)
chr4 (105-164)||(50674655-50674715)
[»] chr1 (3 HSPs)
chr1 (115-173)||(24381868-24381927)
chr1 (107-154)||(24341215-24341263)
chr1 (107-154)||(24353580-24353628)
[»] chr7 (1 HSPs)
chr7 (41-69)||(48884815-48884843)


Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 7772845 - 7773079
Alignment:
Q  3 acaagtccactgatattagagaacaaaactttatttt---ccttcaacatgtataaactcatcagattaa------------aacaatttcaagcagtga 87  Q
    |||||||||||||||||||||||||||| ||||||||   ||||||||||||||||||||||||||||||            ||||||||||||||||||    
T  7772845 acaagtccactgatattagagaacaaaaatttatttttttccttcaacatgtataaactcatcagattaatttaccatataaaacaatttcaagcagtga 7772944  T
Q  88 cagattgagttacatatcacaaacaaagttgtcaatatttcca-taagcatatgacaaatagttaaccaataaacattccacgacataatggttcagctc 186  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||| ||| ||||| ||||||||    
T  7772945 cagattgagttacacatcacaaacaaagttgtcaatatttccaataagcctatgacaaataattaaccaataaacattccatgacgtaatgattcagctc 7773044  T
Q  187 atttacataatagctcatgatacaaatgaggttac 221  Q
    ||||||||||||||||||| |||||||||||||||    
T  7773045 atttacataatagctcatgttacaaatgaggttac 7773079  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 117 - 221
Target Start/End: Complemental strand, 7879246 - 7879140
Alignment:
Q  117 tgtcaatatttcca-taagcatatgacaaat-agttaaccaataaacattccacgacataatggttcagctcatttacataatagctcatgatacaaatg 214  Q
    |||||||||||||| |||||||| ||||| | ||| ||||| ||||||||||| |||||| ||||||| |||||||||||||||||||||| ||||||||    
T  7879246 tgtcaatatttccaataagcatacgacaatttagtcaaccagtaaacattccatgacatattggttcacctcatttacataatagctcatgttacaaatg 7879147  T
Q  215 aggttac 221  Q
    |||||||    
T  7879146 aggttac 7879140  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 103 - 221
Target Start/End: Original strand, 7779120 - 7779237
Alignment:
Q  103 atcacaaacaaagttgtcaatatttcca-taagcatatgacaaatagttaaccaataaacattccacgacataatggttcagctcatttacataatagct 201  Q
    |||||||| ||||||||||||||||||| ||||||||  ||||||||| ||||||||||||||||| || |||   | ||| |||||||||||| |||||    
T  7779120 atcacaaagaaagttgtcaatatttccaataagcata--acaaatagtcaaccaataaacattccatgatatatcaggtcaactcatttacatactagct 7779217  T
Q  202 catgatacaaatgaggttac 221  Q
    |||| |||||||||||||||    
T  7779218 catgttacaaatgaggttac 7779237  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 45384085 - 45384153
Alignment:
Q  105 cacaaacaaagttgtcaatatttccataagcatatgacaaatagttaaccaataaacattccacgacat 173  Q
    |||||||| ||||||||||||||| |||||||||| |||||| ||||||||||| ||||| || |||||    
T  45384085 cacaaacagagttgtcaatatttcaataagcatattacaaattgttaaccaatagacattgcatgacat 45384153  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 214
Target Start/End: Complemental strand, 7790924 - 7790813
Alignment:
Q  105 cacaaacaaagttgtcaatatttcca-taagcatatgacaaatagttaaccaataaacattccacgacataatggttcagctcat-ttacataatagctc 202  Q
    |||||||||||  ||||||||||||| || ||||||||||||| ||||||||||||| | | || || ||   |||||||||||| ||||||| ||||||    
T  7790924 cacaaacaaagcagtcaatatttccaatatgcatatgacaaatcgttaaccaataaatacttcatgaaatgtgggttcagctcatgttacatactagctc 7790825  T
Q  203 atgatacaaatg 214  Q
    ||| ||||||||    
T  7790824 atgttacaaatg 7790813  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 164
Target Start/End: Original strand, 49040384 - 49040444
Alignment:
Q  105 cacaaacaaagttgtcaatatttcca-taagcatatgacaaatagttaaccaataaacatt 164  Q
    |||||||||||||||||||||| ||| ||||||||| ||| |||||||||||||| |||||    
T  49040384 cacaaacaaagttgtcaatattaccaataagcatattacagatagttaaccaatatacatt 49040444  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 50249783 - 50249844
Alignment:
Q  6 agtccactgatattagagaacaaaactttattttccttcaacatgtataaactcatcagattaa 69  Q
    |||||||||| ||||||||||||||| ||  |||||||||| ||| ||||||||||||||||||    
T  50249783 agtccactgaaattagagaacaaaacctt--tttccttcaatatgcataaactcatcagattaa 50249844  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 7787540 - 7787475
Alignment:
Q  110 acaaagttgtcaatatttcc-ataagcatatgacaaatagttaaccaataaacattccacgacata 174  Q
    |||||||||||||||||| | |||||||||||||||| ||| ||| |||||||||| || ||||||    
T  7787540 acaaagttgtcaatattttcgataagcatatgacaaacagtaaacgaataaacatttcatgacata 7787475  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 45365274 - 45365343
Alignment:
Q  105 cacaaacaaagttgtcaatatttcca-taagcatatgacaaatagttaaccaataaacattccacgacat 173  Q
    ||||||||||| | ||||| |||||| ||||||||| |||||| ||||||||||||||||| || |||||    
T  45365274 cacaaacaaagatatcaatgtttccaataagcatattacaaattgttaaccaataaacattgcatgacat 45365343  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 188
Target Start/End: Complemental strand, 48899615 - 48899530
Alignment:
Q  105 cacaaacaaagttgtcaatatttcca-taagcatatgacaaa-tagttaaccaataaacattccacgacataatggttcagctcat 188  Q
    ||||||||||| |||||||||||||| |||||||||  |||| |||| || ||||||||||| || |||||| ||| |||||||||    
T  48899615 cacaaacaaagctgtcaatatttccaataagcatattgcaaaatagtgaaacaataaacatttcatgacatattggatcagctcat 48899530  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 37826024 - 37826088
Alignment:
Q  6 agtccactgatattagagaacaaaacttta-ttttccttcaacatgtataaactcatcagattaa 69  Q
    |||||||||| ||||||||||||||| ||| ||||||||||| ||| |||| ||||||| |||||    
T  37826024 agtccactgaaattagagaacaaaaccttatttttccttcaatatgcataacctcatcaaattaa 37826088  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 185
Target Start/End: Complemental strand, 50667188 - 50667113
Alignment:
Q  110 acaaagttgtcaatatt-tccataagcatatgacaaatagttaaccaataaacattccacgacataatggttcagct 185  Q
    ||||||||||||||||| || |||||||||| ||||| ||||||||||||||  || || |||||||||| ||||||    
T  50667188 acaaagttgtcaatattctcaataagcatattacaaa-agttaaccaataaatgtttcatgacataatggatcagct 50667113  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 50674715 - 50674655
Alignment:
Q  105 cacaaacaaagttgtcaatatttcc-ataagcatatgacaaatagttaaccaataaacatt 164  Q
    ||||||||||| ||||||||||||| ||||||||||  ||| |||||||| ||||||||||    
T  50674715 cacaaacaaagctgtcaatatttccaataagcatattgcaactagttaacaaataaacatt 50674655  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 24381927 - 24381868
Alignment:
Q  115 gttgtcaatatttcca-taagcatatgacaaatagttaaccaataaacattccacgacat 173  Q
    |||||||||||||||| ||| ||| | |||||||||||||||||||||||| || |||||    
T  24381927 gttgtcaatatttccaataaacatgttacaaatagttaaccaataaacatttcatgacat 24381868  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 24341263 - 24341215
Alignment:
Q  107 caaacaaagttgtcaatatttcc-ataagcatatgacaaatagttaacc 154  Q
    ||||||||||||| ||||||||| |||| ||||| ||||||||||||||    
T  24341263 caaacaaagttgttaatatttccaataaacatattacaaatagttaacc 24341215  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 24353628 - 24353580
Alignment:
Q  107 caaacaaagttgtcaatatttcc-ataagcatatgacaaatagttaacc 154  Q
    ||||||||||||| ||||||||| |||| ||||| ||||||||||||||    
T  24353628 caaacaaagttgttaatatttccaataaacatattacaaatagttaacc 24353580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 69
Target Start/End: Complemental strand, 48884843 - 48884815
Alignment:
Q  41 cttcaacatgtataaactcatcagattaa 69  Q
    |||||||||||||||||||||||||||||    
T  48884843 cttcaacatgtataaactcatcagattaa 48884815  T

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