View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15438_low_2 (Length: 541)

Name: NF15438_low_2
Description: NF15438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15438_low_2
NF15438_low_2
[»] chr2 (12 HSPs)
chr2 (92-466)||(29960258-29960603)
chr2 (91-324)||(302269-302514)
chr2 (150-323)||(43081634-43081820)
chr2 (179-323)||(13273282-13273419)
chr2 (98-324)||(295654-295879)
chr2 (167-323)||(18163897-18164067)
chr2 (203-324)||(45485784-45485918)
chr2 (192-323)||(21794487-21794631)
chr2 (273-324)||(39190646-39190697)
chr2 (231-281)||(39190702-39190752)
chr2 (91-175)||(39190766-39190850)
chr2 (381-466)||(295919-296002)
[»] chr7 (9 HSPs)
chr7 (203-466)||(45937839-45938114)
chr7 (231-324)||(22582334-22582440)
chr7 (92-168)||(45937770-45937846)
chr7 (165-281)||(297037-297153)
chr7 (192-281)||(293171-293260)
chr7 (91-172)||(297005-297086)
chr7 (91-147)||(293111-293167)
chr7 (274-324)||(293266-293317)
chr7 (273-308)||(297158-297193)
[»] chr8 (5 HSPs)
chr8 (91-324)||(37786580-37786826)
chr8 (92-281)||(37791207-37791381)
chr8 (180-323)||(11096107-11096261)
chr8 (97-172)||(37186910-37186985)
chr8 (203-324)||(37186787-37186921)
[»] scaffold0038 (1 HSPs)
scaffold0038 (91-429)||(49253-49628)
[»] chr6 (3 HSPs)
chr6 (91-429)||(28249091-28249466)
chr6 (165-323)||(31888456-31888627)
chr6 (206-323)||(7501366-7501496)
[»] chr4 (11 HSPs)
chr4 (273-464)||(5715377-5715574)
chr4 (91-325)||(50935537-50935786)
chr4 (91-201)||(5707099-5707209)
chr4 (179-281)||(53011136-53011238)
chr4 (92-321)||(50911741-50912000)
chr4 (389-466)||(5725714-5725791)
chr4 (203-273)||(56563190-56563260)
chr4 (165-323)||(53008230-53008402)
chr4 (217-281)||(16854014-16854078)
chr4 (231-264)||(5715322-5715355)
chr4 (283-323)||(53011253-53011294)
[»] chr5 (6 HSPs)
chr5 (92-324)||(689961-690172)
chr5 (165-323)||(9507596-9507767)
chr5 (172-324)||(34854023-34854193)
chr5 (205-324)||(32090209-32090341)
chr5 (179-323)||(9503628-9503785)
chr5 (205-324)||(3627490-3627625)
[»] chr3 (11 HSPs)
chr3 (165-323)||(531527-531698)
chr3 (91-201)||(18641064-18641174)
chr3 (203-324)||(28920269-28920403)
chr3 (389-466)||(18649484-18649561)
chr3 (203-312)||(4315563-4315685)
chr3 (92-172)||(28920392-28920472)
chr3 (205-323)||(55418421-55418523)
chr3 (207-281)||(32813593-32813667)
chr3 (273-324)||(47743902-47743953)
chr3 (167-283)||(47743791-47743899)
chr3 (381-429)||(41925151-41925198)
[»] chr1 (3 HSPs)
chr1 (92-185)||(44541482-44541575)
chr1 (154-324)||(44541358-44541541)
chr1 (381-464)||(50778025-50778105)
[»] scaffold0050 (2 HSPs)
scaffold0050 (17-91)||(72328-72402)
scaffold0050 (466-530)||(72273-72331)


Alignment Details
Target: chr2 (Bit Score: 172; Significance: 3e-92; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 92 - 466
Target Start/End: Original strand, 29960258 - 29960603
Alignment:
Q  92 tattggaatattaatcaataactgttgttcagaatctggagtgcagcttctgaacatgagcttctgaagtgctgcttctgaagtactgcttctgaagtgc 191  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||| ||    
T  29960258 tattggaatattaatcaataactgttgtttagaatttggagtgcagcttctgaacatgagcttctgaagtgctgcttctaaagtgctacttctgaagggc 29960357  T
Q  192 agcttttgatatgcagcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttacaacgtccag 291  Q
    ||||| ||||              ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29960358 agcttatgat--------------gtcttcagaagcagggtctagtaacaaaccttggttagcgtgttaaccaaggtagttagtttgttacaacgtctag 29960443  T
Q  292 ttgtatatatactcactcatgtgttgtaaataagtatcaacgatcaat-aaaattcattagttttctctcttcagtttttacaacaacaatctgttattt 390  Q
    ||||||||||||||||| |||||||||||||||||    ||||||||| ||||||||||              |||||||||||||||  | ||||||||    
T  29960444 ttgtatatatactcacttatgtgttgtaaataagt----acgatcaataaaaattcatt--------------agtttttacaacaactttttgttattt 29960525  T
Q  391 tcatcttg--cttcgaaacaacttatttttcataagcacttctgttgtgcatagaacataatgaattgttctaacaat 466  Q
    ||||||||  ||| |||| ||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||    
T  29960526 tcatcttgctcttagaaataacttatttttcataagcacttccgctgtgcatagaacatagtgaattgttctaacaat 29960603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 91 - 324
Target Start/End: Original strand, 302269 - 302514
Alignment:
Q  91 gtattggaatattaatcaataactgttgttcagaatctggagtgcagcttctgaacatgagcttctgaagtgctgcttctgaagtactgcttctgaagtg 190  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  302269 gtattggaatatgaatcaataactgttgttcagaatctgaagtgcagcttctgaacatgagcttctgaagtgctgcttctgaagtacagcttctgaagtg 302368  T
Q  191 cagcttttgatatgcagcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaaccaaggtagttagtt-------------t 277  Q
    |  ||| |||| ||||||||||||||||||||||||||  |||||||||  ||||||||||||||||||||||| |||||||||||             |    
T  302369 ccacttctgatgtgcagcttctgatgtcttcagaagcagagtctagtaaccaaccttggttagcgtgttaaccagggtagttagtttgttagaggagttt 302468  T
Q  278 gttacaacgtccagttgtatatatactcactcatgtgttgtaaataa 324  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||    
T  302469 gttacaatgtccagttgtatatatactcact-atgtgttgtaaataa 302514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 150 - 323
Target Start/End: Complemental strand, 43081820 - 43081634
Alignment:
Q  150 agcttctgaagtgctgcttctgaagtactgcttctgaagtgcagcttttgatatgcagcttctgatgtcttcagaagcatggtctagtaataaaccttgg 249  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||  |||||||||||||| ||||    
T  43081820 agcttctgaagtgcagcttctgaagtacagcttctgaagtgcagcttctgatgtgcagcttctgatgtcttcagaagcagagtctagtaataaacattgg 43081721  T
Q  250 ttagcgtgttaaccaaggtagttagttt-------------gttacaacgtccagttgtatatatactcactcatgtgttgtaaata 323  Q
    ||||| ||||||| ||||||||||||||             ||||||||||||| |||||||| |||||||||||||||||||||||    
T  43081720 ttagcatgttaacgaaggtagttagtttgttataggagtttgttacaacgtccaattgtatatgtactcactcatgtgttgtaaata 43081634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 179 - 323
Target Start/End: Original strand, 13273282 - 13273419
Alignment:
Q  179 gcttctgaagtgcagcttttgatatgcagcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttg 278  Q
    ||||| ||||| |||||| |||  ||||||||||    ||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13273282 gcttcagaagtacagcttctgaagtgcagcttct----tcttcagaagcagagtctagtaacaaaccttggttagcgtgttaaccaaggtagttagtttg 13273377  T
Q  279 ttacaacgtccagttgtatatatactcactcatgtgttgtaaata 323  Q
    ||   ||||||||||||||||||| ||||||||||||||||||||    
T  13273378 tt---acgtccagttgtatatatattcactcatgtgttgtaaata 13273419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 98 - 324
Target Start/End: Original strand, 295654 - 295879
Alignment:
Q  98 aatattaatcaataactgttgttcagaatctggagtgcagcttctgaacatgagcttctgaagtgctgcttctgaagtactgcttctgaagtgcagcttt 197  Q
    |||||||||| |||||||||||| ||||| || ||||||||||||||||||||||||              ||||||||| || ||||||||| |||||     
T  295654 aatattaatcgataactgttgtttagaatttgaagtgcagcttctgaacatgagctt--------------ctgaagtacagcgtctgaagtgtagcttc 295739  T
Q  198 tgatatgcagcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaaccaaggtagtt-------------agtttgttacaa 284  Q
    |||| ||||||||||||||||||||||||||  |||||||||  ||||||| |||| |||||||||| | |||||             ||||||||||||    
T  295740 tgatgtgcagcttctgatgtcttcagaagcagagtctagtaaccaaccttgattagtgtgttaaccaggatagttagtttgttagaggagtttgttacaa 295839  T
Q  285 cgtccagttgtatatatactcactcatgtgttgtaaataa 324  Q
     |||||||||||||||||||||||||||||||||||||||    
T  295840 tgtccagttgtatatatactcactcatgtgttgtaaataa 295879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 167 - 323
Target Start/End: Original strand, 18163897 - 18164067
Alignment:
Q  167 ttctgaagtact-gcttctgaagtgcagcttttgatatgcagcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaaccaa 265  Q
    |||||||||||  ||||||||||| |||||| ||| |||| |||||||||||||| ||||| |  |||||||||||| | ||||||||||||||||||||    
T  18163897 ttctgaagtaccagcttctgaagtacagcttctgaaatgctgcttctgatgtctttagaagtagagtctagtaataaccattggttagcgtgttaaccaa 18163996  T
Q  266 ggtagtt-------------agtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaata 323  Q
    |||||||             |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18163997 ggtagttagtttgttagaggagtttgttacaacgtccagttgtatatatactcactcaagtgttgtaaata 18164067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 203 - 324
Target Start/End: Complemental strand, 45485918 - 45485784
Alignment:
Q  203 tgcagcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaaccaaggtagttagttt-------------gttacaacgtcc 289  Q
    ||||||||||||||||||||||| ||  |||||| || |||||||||||||||||||||||||||||||||||||             ||||||||||||    
T  45485918 tgcagcttctgatgtcttcagaaacagagtctagcaacaaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaacgtcc 45485819  T
Q  290 agttgtatatatactcactcatgtgttgtaaataa 324  Q
    |||||||||||||||||||||||||||||||||||    
T  45485818 agttgtatatatactcactcatgtgttgtaaataa 45485784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 192 - 323
Target Start/End: Complemental strand, 21794631 - 21794487
Alignment:
Q  192 agcttttgatatgcagcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaaccaaggtagttagttt-------------g 278  Q
    ||||| |||| ||||||||||||||||||||||||||  ||||||||| ||||| |||||||||||||||||||||||||||||||             |    
T  21794631 agcttctgatgtgcagcttctgatgtcttcagaagcagagtctagtaacaaaccatggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 21794532  T
Q  279 ttacaacgtccagttgtatatatactcactcatgtgttgtaaata 323  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||    
T  21794531 ttacaacgtccagttgtatatatacttactcatgtgttataaata 21794487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 273 - 324
Target Start/End: Complemental strand, 39190697 - 39190646
Alignment:
Q  273 agtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaataa 324  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39190697 agtttgttacaacgtctagttgtatatatactcactcatgtgttgtaaataa 39190646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 39190752 - 39190702
Alignment:
Q  231 gtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgtta 281  Q
    ||||||||| |||| ||||||||| ||||||||||||||||||||||||||    
T  39190752 gtctagtaacaaactttggttagcatgttaaccaaggtagttagtttgtta 39190702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 175
Target Start/End: Complemental strand, 39190850 - 39190766
Alignment:
Q  91 gtattggaatattaatcaataactgttgttcagaatctggagtgcagcttctgaacatgagcttctgaagtgctgcttctgaagt 175  Q
    ||||| |||||||||||||||||||||| ||||| |||  |||||||| |||| |||| ||  |||||||||| || ||||||||    
T  39190850 gtattagaatattaatcaataactgttgctcagactcttaagtgcagcctctggacatcagactctgaagtgcagcgtctgaagt 39190766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 466
Target Start/End: Original strand, 295919 - 296002
Alignment:
Q  381 tctgttattttcatcttgcttcgaaacaacttatttttcataagcac-ttctgttgtgcatagaacataatgaattgttctaacaat 466  Q
    ||||||||||||||||||||   ||||||||||||||  |||||||| ||| | |||||||||||||||  | ||||||||||||||    
T  295919 tctgttattttcatcttgctcttaaacaacttatttt--ataagcactttccgctgtgcatagaacatagcg-attgttctaacaat 296002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 162; Significance: 3e-86; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 203 - 466
Target Start/End: Original strand, 45937839 - 45938114
Alignment:
Q  203 tgcagcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaaccaaggtagttagtt-------------tgttacaacgtcc 289  Q
    |||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||    
T  45937839 tgcagcttttgatgtcttcaaaagcagggtctagtaataaaccttggttagcgtgttaaccaaggtagttagttagttagaggagtttgttacaacgtcc 45937938  T
Q  290 agttgtatatatactcactcatgtgttgtaaataagtatcaacgatcaataaaa-ttcattagttttctctcttcagtttttacaacaacaatctgttat 388  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  | ||||||    
T  45937939 agttgtatatatactcactcat-tgt-gtaaataagtatcaacgatcaataaaaattcattagttttctctcttcagtttttacaacaactttatgttat 45938036  T
Q  389 tttcatcttgcttcgaaacaacttatttttcataagcacttctgttgtgcatagaacataatgaattgttctaacaat 466  Q
    ||||||||||||| |||||| ||||||||||||||||||||| | |||||||||||||||  ||||||||||||||||    
T  45938037 tttcatcttgcttagaaacatcttatttttcataagcacttccgctgtgcatagaacatagggaattgttctaacaat 45938114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 231 - 324
Target Start/End: Complemental strand, 22582440 - 22582334
Alignment:
Q  231 gtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgt-------------tacaacgtccagttgtatatatactcactcatgtgttg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||    
T  22582440 gtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttggtacaacgtccagttgtatatatactcactcatgtgttg 22582341  T
Q  318 taaataa 324  Q
    |||||||    
T  22582340 taaataa 22582334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 45937770 - 45937846
Alignment:
Q  92 tattggaatattaatcaataactgttgttcagaatctggagtgcagcttctgaacatgagcttctgaagtgctgctt 168  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||    
T  45937770 tattagaatattaatcaataactgttgttcagaatctggagtgcaacttttgaacatgagcttctgaagtgcagctt 45937846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 165 - 281
Target Start/End: Original strand, 297037 - 297153
Alignment:
Q  165 gcttctgaagtactgcttctgaagtgcagcttttgatatgcagcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaacca 264  Q
    |||||||||||   |||||||||   || ||| |||| ||||||||||||||||||||||| |   || |||||| ||||||||||||||||||||||||    
T  297037 gcttctgaagtgtagcttctgaacatcaacttctgatgtgcagcttctgatgtcttcagaaactgagtttagtaacaaaccttggttagcgtgttaacca 297136  T
Q  265 aggtagttagtttgtta 281  Q
    |||||||||||||||||    
T  297137 aggtagttagtttgtta 297153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 192 - 281
Target Start/End: Original strand, 293171 - 293260
Alignment:
Q  192 agcttttgatatgcagcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgtta 281  Q
    |||||||||| || ||||| |||||||||||||| |   || |||||| |||| ||||||||||||||||||||||||||||||||||||    
T  293171 agcttttgatgtgtagcttttgatgtcttcagaaactgagtttagtaacaaacattggttagcgtgttaaccaaggtagttagtttgtta 293260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 91 - 172
Target Start/End: Original strand, 297005 - 297086
Alignment:
Q  91 gtattggaatattaatcaataactgttgttcagaatctggagtgcagcttctgaacatgagcttctgaagtgctgcttctga 172  Q
    ||||| |||||||||||||||||||||||||||  |||| |||| ||||||||||||| | ||||||| |||| ||||||||    
T  297005 gtattagaatattaatcaataactgttgttcagcttctgaagtgtagcttctgaacatcaacttctgatgtgcagcttctga 297086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 293111 - 293167
Alignment:
Q  91 gtattggaatattaatcaataactgttgttcagaatctggagtgcagcttctgaaca 147  Q
    ||||| |||||||||||||||||||||||||||  |||| |||||||||||||||||    
T  293111 gtattagaatattaatcaataactgttgttcagcttctgaagtgcagcttctgaaca 293167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 293266 - 293317
Alignment:
Q  274 gtttgttacaacgtccagttgtatatatactcactcatgtg-ttgtaaataa 324  Q
    ||||||||||||||| |||||||||||||||||||||| || ||||||||||    
T  293266 gtttgttacaacgtctagttgtatatatactcactcatatgtttgtaaataa 293317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 308
Target Start/End: Original strand, 297158 - 297193
Alignment:
Q  273 agtttgttacaacgtccagttgtatatatactcact 308  Q
    |||||||||||||||| |||||||||||||||||||    
T  297158 agtttgttacaacgtctagttgtatatatactcact 297193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 147; Significance: 3e-77; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 91 - 324
Target Start/End: Complemental strand, 37786826 - 37786580
Alignment:
Q  91 gtattggaatattaatcaataactgttgttcagaatctggagtgcagcttctgaacatgagcttctgaagtgctgcttctgaagtactgcttctgaagtg 190  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  37786826 gtattggaatattaatcaataactgttgtttagaatctgaagtgcagcttctgaacatgagcttctgaagtgatgcttctgaagtacagcttctgaagtg 37786727  T
Q  191 cagcttttgatatgcagcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaaccaaggtagttagttt------------- 277  Q
    |||||| |||| |||||||| ||||||||||| |||||  |||||||||  ||||||||||||||||||||||| ||||||||||||                 
T  37786726 cagcttctgatgtgcagcttttgatgtcttcataagcagagtctagtaaccaaccttggttagcgtgttaaccagggtagttagtttgttagaggacttt 37786627  T
Q  278 gttacaacgtccagttgtatatatactcactcatgtgttgtaaataa 324  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||    
T  37786626 gttacaacgtccagttgtatatatattcactcatgtgttgtaaataa 37786580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 92 - 281
Target Start/End: Complemental strand, 37791381 - 37791207
Alignment:
Q  92 tattggaatattaatcaataactgttgttcagaatctggagtgcagcttctgaacatgagcttctgaagtgctgcttctgaagtactgcttctgaagtgc 191  Q
    ||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||| ||||||||||                   
T  37791381 tattggaatattaatcaataactgttgttcagaatatgaagtgcaacttctgaacatgagcttctgaagtgctgtttctgaagta--------------t 37791296  T
Q  192 agcttttgatatgcagcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgtta 281  Q
    ||||| |||| ||||||||||||||||||||||||||  || ||||||  ||||||| ||||| ||||||||||||||||||||||||||    
T  37791295 agcttctgatgtgcagcttctgatgtcttcagaagcagagt-tagtaaccaaccttgattagcatgttaaccaaggtagttagtttgtta 37791207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 180 - 323
Target Start/End: Original strand, 11096107 - 11096261
Alignment:
Q  180 cttctgaagtgcagcttttgatatgcagcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaaccaaggtagtt------- 272  Q
    ||||||||||| |||||||||| || ||||||||||||||||||||| |  ||||||||| |||| |||||||||||||||| ||||||||||           
T  11096107 cttctgaagtgtagcttttgatgtgtagcttctgatgtcttcagaagga--gtctagtaacaaactttggttagcgtgttaatcaaggtagttagtttgt 11096204  T
Q  273 ------agtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaata 323  Q
          ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11096205 tagaggagtttgttacaacgttcagttgtatatatactcactcatgtgttgtaaata 11096261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 97 - 172
Target Start/End: Complemental strand, 37186985 - 37186910
Alignment:
Q  97 gaatattaatcaataactgttgttcagaatctggagtgcagcttctgaacatgagcttctgaagtgctgcttctga 172  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  37186985 gaatattaatcaataattgttgttcagaatctgaagtgcagcttctgaacatgagcttctgaagtgcagcttctga 37186910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 203 - 324
Target Start/End: Complemental strand, 37186921 - 37186787
Alignment:
Q  203 tgcagcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgtta-------------caacgtcc 289  Q
    |||||||||||||||||| |||||||  |||||||||||||| |||| ||  |||||||||| ||||||||||||||||             |||||||     
T  37186921 tgcagcttctgatgtctttagaagcagagtctagtaataaacattggctatagtgttaaccagggtagttagtttgttagaggagtttgttacaacgtct 37186822  T
Q  290 agttgtatatatactcactcatgtgttgtaaataa 324  Q
    |||||||||||||||||||||||||||||||||||    
T  37186821 agttgtatatatactcactcatgtgttgtaaataa 37186787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 125; Significance: 4e-64; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 91 - 429
Target Start/End: Original strand, 49253 - 49628
Alignment:
Q  91 gtattggaatattaatcaataactgttgttcagaatctggagtgcagcttctgaacatgagcttctgaagtgctgcttctgaagtactgcttctgaagtg 190  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||   |||||||| ||  |||||||||||||    
T  49253 gtattggagtattaatcaataactgttgttcagaatctgaagtgcagcttcggaacatgagcttctgaagtatagcttctgatgttttgcttctgaagtg 49352  T
Q  191 cagcttttg-----------------atatgcagcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaaccaaggtagtt- 272  Q
    |||||| ||                 || ||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||     
T  49353 cagcttctgaacatcagaaacttctaatgtgctgcttctgatgtcttcagaagcagggtctagtaacaaaccttggttagcgtgttaaccaaggtagtta 49452  T
Q  273 ------------agtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaat------aagtatcaacgatcaa---taaaattcattag 351  Q
                |||||||||||||||| |||||||||||||||||||||||||||||||||      ||| |||| | |||||    ||||||||||||    
T  49453 gtttgttagagaagtttgttacaacgtctagttgtatatatactcactcatgtgttgtaaataataacaagcatcagcaatcaaaataaaaattcattag 49552  T
Q  352 ttttctctcttcagtttttacaacaacaatctgttattttcatcttgcttcgaaacaacttatttttcataagcactt 429  Q
    |||||||||||||| |||||||| |||  | ||||| ||||||||||||| |||||| ||||||||||||||||||||    
T  49553 ttttctctcttcag-ttttacaataactttatgtta-tttcatcttgcttagaaacagcttatttttcataagcactt 49628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 4e-64; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 91 - 429
Target Start/End: Original strand, 28249091 - 28249466
Alignment:
Q  91 gtattggaatattaatcaataactgttgttcagaatctggagtgcagcttctgaacatgagcttctgaagtgctgcttctgaagtactgcttctgaagtg 190  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||   |||||||| ||  |||||||||||||    
T  28249091 gtattggagtattaatcaataactgttgttcagaatctgaagtgcagcttcggaacatgagcttctgaagtatagcttctgatgttttgcttctgaagtg 28249190  T
Q  191 cagcttttg-----------------atatgcagcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaaccaaggtagtt- 272  Q
    |||||| ||                 || ||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||     
T  28249191 cagcttctgaacatcagaaacttctaatgtgctgcttctgatgtcttcagaagcagggtctagtaacaaaccttggttagcgtgttaaccaaggtagtta 28249290  T
Q  273 ------------agtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaat------aagtatcaacgatcaa---taaaattcattag 351  Q
                |||||||||||||||| |||||||||||||||||||||||||||||||||      ||| |||| | |||||    ||||||||||||    
T  28249291 gtttgttagagaagtttgttacaacgtctagttgtatatatactcactcatgtgttgtaaataataacaagcatcagcaatcaaaataaaaattcattag 28249390  T
Q  352 ttttctctcttcagtttttacaacaacaatctgttattttcatcttgcttcgaaacaacttatttttcataagcactt 429  Q
    |||||||||||||| |||||||| |||  | ||||| ||||||||||||| |||||| ||||||||||||||||||||    
T  28249391 ttttctctcttcag-ttttacaataactttatgtta-tttcatcttgcttagaaacagcttatttttcataagcactt 28249466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 165 - 323
Target Start/End: Original strand, 31888456 - 31888627
Alignment:
Q  165 gcttctgaagtactgcttctgaagtgcagcttttgatatgcagcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaacca 264  Q
    ||||||||||||  |||||| ||||||||||| | |  ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |    
T  31888456 gcttctgaagtatagcttctaaagtgcagcttctaaagtgcagcttctgatgtcttcagaagcatagtctagtaacaaaccttggttagcgtgttaacta 31888555  T
Q  265 aggtagtt-------------agtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaata 323  Q
    ||||||||             ||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  31888556 aggtagttagtttgttagagaagtttgttacaacgtgcaattgtatatatactcactcatgtgttgtaaata 31888627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 206 - 323
Target Start/End: Complemental strand, 7501496 - 7501366
Alignment:
Q  206 agcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaaccaaggtagttagttt-------------gttacaacgtccagt 292  Q
    ||||||||||||||||| |||||  ||||||||| |||||||||||||||||||||||||| ||||||||||             ||||||||| |||||    
T  7501496 agcttctgatgtcttcacaagcagagtctagtaacaaaccttggttagcgtgttaaccaagatagttagtttgttagaggagtttgttacaacgcccagt 7501397  T
Q  293 tgtatatatactcactcatgtgttgtaaata 323  Q
    ||| |||||||||||||||||||||||||||    
T  7501396 tgtttatatactcactcatgtgttgtaaata 7501366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 273 - 464
Target Start/End: Original strand, 5715377 - 5715574
Alignment:
Q  273 agtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaataagtatcaa-----cgatcaataaaa-ttcattagttttc--tctcttca 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||     | |||||||||| ||||||||||||   ||||||||    
T  5715377 agtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaataaa-atcaataaaacaatcaataaaaattcattagtttttcttctcttca 5715475  T
Q  365 gtttttacaacaacaatctgttattttcatcttgcttcgaaacaacttatttttcataagcacttctgttgtgcatagaacataatgaattgttctaaca 464  Q
    ||||||||||||||  | |||||||| |||||||||| |||||||||||||||||||||||||||    ||||||||||||||| |||||||||||||||    
T  5715476 gtttttacaacaactttatgttattt-catcttgcttagaaacaacttatttttcataagcactttcactgtgcatagaacatagtgaattgttctaaca 5715574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 91 - 325
Target Start/End: Original strand, 50935537 - 50935786
Alignment:
Q  91 gtattggaatattaatcaataactgttgttcagaatctggagtgcagcttctgaa---cat-gagcttctgaagtgc----tgcttctgaagtactgctt 182  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||   ||  | ||| |||||||||    ||||||||||||   ||||    
T  50935537 gtattagaatattaatcaataactgttgttcagaagctggagtgcaacttctgaagtgcagagtgctactgaagtgcagagtgcttctgaagtgaagctt 50935636  T
Q  183 ctgaagtgcagcttttgatatgcagcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaaccaaggtagttagtt------ 276  Q
    ||||||  || ||| |||| ||||| || |||||||||||||||    ||||||||| |||| |||||||||||||||||||||||||||||||          
T  50935637 ctgaaga-caacttctgatgtgcagattatgatgtcttcagaagttgagtctagtaacaaac-ttggttagcgtgttaaccaaggtagttagttagagga 50935734  T
Q  277 ---tgttacaacgtccagttgtatatatactcactcatgtgttgtaaataag 325  Q
       ||||||||| || ||||||||||||||||||||||||||||||||||||    
T  50935735 gtttgttacaacatctagttgtatatatactcactcatgtgttgtaaataag 50935786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 91 - 201
Target Start/End: Original strand, 5707099 - 5707209
Alignment:
Q  91 gtattggaatattaatcaataactgttgttcagaatctggagtgcagcttctgaacatgagcttctgaagtgctgcttctgaagtactgcttctgaagtg 190  Q
    |||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||| || ||||||||||| |  ||||||| |||    
T  5707099 gtattggaatattaatcaataattgttgttcagaatctgaagtgtagcttctgaacatgagcttctgaagcgcagcttctgaagtgcaacttctgatgtg 5707198  T
Q  191 cagcttttgat 201  Q
    |||||||||||    
T  5707199 cagcttttgat 5707209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 179 - 281
Target Start/End: Original strand, 53011136 - 53011238
Alignment:
Q  179 gcttctgaagtgcagcttttgatatgcagcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttg 278  Q
    ||||||||||| |||||| |||| |||||||| |||||||||||||||||  ||||||||| |||| |||||||||||||||||||||||||||||||||    
T  53011136 gcttctgaagtacagcttctgatgtgcagcttatgatgtcttcagaagcagagtctagtaacaaacattggttagcgtgttaaccaaggtagttagtttg 53011235  T
Q  279 tta 281  Q
    |||    
T  53011236 tta 53011238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 92 - 321
Target Start/End: Original strand, 50911741 - 50912000
Alignment:
Q  92 tattggaatattaatcaataactgttgttcagaatctggagtgcagcttctgaacatgagcttctgaagtgc----tgcttctgaagtac----tgcttc 183  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||    |||| |||||||||    |||| ||||||| |    ||||||    
T  50911741 tattagaatattaatcaataactgttgttcagaagctggagtgcagcttctgaagtgaagctcctgaagtgcagagtgctcctgaagtgcagagtgcttc 50911840  T
Q  184 tgaagtg-------------cagcttttgatatgcagcttctgatgtcttcagaagcatg-gtctagtaataaaccttggttagcgtgttaaccaaggta 269  Q
    |||||||             |||||| |||| ||||| ||||||||||||||||||| || ||||||||| |||| ||||||||||| ||||||||||||    
T  50911841 tgaagtgaagcttctgaagacagcttctgatgtgcagattctgatgtcttcagaagcttgagtctagtaacaaac-ttggttagcgtattaaccaaggta 50911939  T
Q  270 gtt---------agtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaa 321  Q
    |||         |||||||||||||  ||||||||||||||||||||||||||||||||||    
T  50911940 gttagttagaggagtttgttacaacacccagttgtatatatactcactcatgtgttgtaaa 50912000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 389 - 466
Target Start/End: Complemental strand, 5725791 - 5725714
Alignment:
Q  389 tttcatcttgcttcgaaacaacttatttttcataagcacttctgttgtgcatagaacataatgaattgttctaacaat 466  Q
    ||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||    
T  5725791 tttcatcttgcttagaaacaacttattttttataagcacttctgctgtgcatagaacatagtgaattgttctaacaat 5725714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 203 - 273
Target Start/End: Original strand, 56563190 - 56563260
Alignment:
Q  203 tgcagcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaaccaaggtagtta 273  Q
    ||||||||||||||||||||||||||  ||||| ||| |||||||||||||||||||||||||||||||||    
T  56563190 tgcagcttctgatgtcttcagaagcagagtctactaacaaaccttggttagcgtgttaaccaaggtagtta 56563260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 165 - 323
Target Start/End: Original strand, 53008230 - 53008402
Alignment:
Q  165 gcttctgaagtactgcttctgaagtgcagcttttgatatgcagcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaacca 264  Q
    |||||| |||| | |||||||||||  ||||| |||  | ||||||||||||||||||||||||  ||||||||| |||| ||||||||||| |||||||    
T  53008230 gcttctaaagtgcagcttctgaagtatagcttctgaagtacagcttctgatgtcttcagaagcagagtctagtaacaaacattggttagcgtattaacca 53008329  T
Q  265 aggtagttagtt-------------tgttacaacgtccagttgtatatatactcac-tcatgtgttgtaaata 323  Q
    |  |||||||||             ||||||||||||||||||||||||||||||| || |||||||||||||    
T  53008330 aactagttagtttgttagaggagtttgttacaacgtccagttgtatatatactcacttcctgtgttgtaaata 53008402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 16854078 - 16854014
Alignment:
Q  217 tcttcagaagcatggtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgtta 281  Q
    ||||||||||||  ||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  16854078 tcttcagaagcagagtctagtaacaaaccttggttagcgtgttaaccaacgtagttagtttgtta 16854014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 264
Target Start/End: Original strand, 5715322 - 5715355
Alignment:
Q  231 gtctagtaataaaccttggttagcgtgttaacca 264  Q
    ||||||||| ||||||||||||||||||||||||    
T  5715322 gtctagtaacaaaccttggttagcgtgttaacca 5715355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 53011253 - 53011294
Alignment:
Q  283 aacgtccagttgtatatatactcac-tcatgtgttgtaaata 323  Q
    ||||||||||||||||||||||||| || |||||||||||||    
T  53011253 aacgtccagttgtatatatactcacttcctgtgttgtaaata 53011294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 92 - 324
Target Start/End: Original strand, 689961 - 690172
Alignment:
Q  92 tattggaatattaatcaataactgttgttcagaatctggagtgcagcttctgaacatgagcttctgaagtgctgcttctgaagtactgcttctgaagtgc 191  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| | ||||     ||||    
T  689961 tattggaatattaatcaataactgttgttcagaatctgaagtgcagcttc-gaacatgagcttctgaagtgctgcttttgaagtgcagctt-----gtgc 690054  T
Q  192 agcttttgatatgcagcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttacaacgtccag 291  Q
    ||||||||||              ||||||||||| |  || ||||||  || |||||||||||||||||| | ||||||||||||||||||| || |||    
T  690055 agcttttgat--------------gtcttcagaagtagagtttagtaaccaatcttggttagcgtgttaac-agggtagttagtttgttacaatgttcag 690139  T
Q  292 ttgtatatatactcactcatgtgttgtaaataa 324  Q
    |||||||||||||||||||||||||||||||||    
T  690140 ttgtatatatactcactcatgtgttgtaaataa 690172  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 165 - 323
Target Start/End: Original strand, 9507596 - 9507767
Alignment:
Q  165 gcttctgaagtactgcttctgaagtgcagcttttgatatgcagcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaacca 264  Q
    ||||||||||| | ||||||||||| ||| || |||  | || |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  9507596 gcttctgaagtgcagcttctgaagtacagtttctgaagtacaacttctgatgtcttcagaagcagagtctagtaataaaccttggttagcgtgttaacca 9507695  T
Q  265 aggtagtt-------------agtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaata 323  Q
    ||||||||             ||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  9507696 aggtagttagtttgttaaaggagtttgttacaacgtccagttatatatatacccactcatgtgttgtaaata 9507767  T

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Target: chr5; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 172 - 324
Target Start/End: Original strand, 34854023 - 34854193
Alignment:
Q  172 aagtactgcttctgaagtgcagcttttgatatgcagcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaaccaaggtagt 271  Q
    |||||| |||||||||||||| ||| |||| |||||||| |||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||    
T  34854023 aagtacagcttctgaagtgcaacttctgatgtgcagcttttgatgtcttcagaagcagagtctagtaataaactttggttagcgtgttaaccaaggtagt 34854122  T
Q  272 t-------------agtttgttacaacgtc-----cagttgtatatatactcactcatgtgttgtaaataa 324  Q
    |             ||||||||||||||||     ||||||||||||||||||||||||||||||||||||    
T  34854123 taatttgttagaggagtttgttacaacgtccagttcagttgtatatatactcactcatgtgttgtaaataa 34854193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 205 - 324
Target Start/End: Original strand, 32090209 - 32090341
Alignment:
Q  205 cagcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaaccaaggtagttagtt-------------tgttacaacgtccag 291  Q
    |||||||||||||||||||||| |   |||||||| |||||| |||||||||||||||||| ||||||||||             |||||||||||||||    
T  32090209 cagcttctgatgtcttcagaagtagaatctagtaacaaacctcggttagcgtgttaaccaatgtagttagtttgttagaggagtttgttacaacgtccag 32090308  T
Q  292 ttgtatatatactcactcatgtgttgtaaataa 324  Q
    |||||||||||||||||||||||||||||||||    
T  32090309 ttgtatatatactcactcatgtgttgtaaataa 32090341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 179 - 323
Target Start/End: Original strand, 9503628 - 9503785
Alignment:
Q  179 gcttctgaagtgcagcttttgatatgcagcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaaccaaggtagtt------ 272  Q
    ||||||||||| |||||| |||  | ||  |||||| |||||||||||||  |||||||||||||| |||||||||||||||| |||| |||||          
T  9503628 gcttctgaagtacagcttctgaagtacaatttctgaagtcttcagaagcagagtctagtaataaactttggttagcgtgttaatcaagatagttagtttg 9503727  T
Q  273 -------agtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaata 323  Q
           ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9503728 ttagaggagtttgttacaacgtccagttatatatatactcactcatgtgttgtaaata 9503785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 205 - 324
Target Start/End: Original strand, 3627490 - 3627625
Alignment:
Q  205 cagcttctgatgtcttca---gaagcatggtctagtaataaaccttggttagcgtgttaaccaaggtagttagtt-------------tgttacaacgtc 288  Q
    ||||||||||||||||||   ||||||  ||||||||  ||| ||||||||||||||||||||| ||||||||||             ||||||||||||    
T  3627490 cagcttctgatgtcttcatcagaagcagagtctagtagcaaatcttggttagcgtgttaaccaatgtagttagtttattagagaagtttgttacaacgtc 3627589  T
Q  289 cagttgtatatatactcactcatgtgttgtaaataa 324  Q
    ||| ||||||||||||||||||||||||||||||||    
T  3627590 cagatgtatatatactcactcatgtgttgtaaataa 3627625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 165 - 323
Target Start/End: Complemental strand, 531698 - 531527
Alignment:
Q  165 gcttctgaagtactgcttctgaagtgcagcttttgatatgcagcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaacca 264  Q
    |||||||||||   ||||||||||| |||||| ||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||| |    
T  531698 gcttctgaagtggagcttctgaagtacagcttctgatatgcaacttctgatgtcttcagaagcagagtctagtaataaaccttggttagcgtgttaacaa 531599  T
Q  265 aggtagtta-------------gtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaata 323  Q
    |||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  531598 aggtagttagttttttagaggagtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaata 531527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 91 - 201
Target Start/End: Complemental strand, 18641174 - 18641064
Alignment:
Q  91 gtattggaatattaatcaataactgttgttcagaatctggagtgcagcttctgaacatgagcttctgaagtgctgcttctgaagtactgcttctgaagtg 190  Q
    |||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||| || ||||||||||| |  ||||||| |||    
T  18641174 gtattggaatattaatcaataattgttgttcagaatctgaagtgtagcttctgaacatgagcttctgaagcgcagcttctgaagtgcaacttctgatgtg 18641075  T
Q  191 cagcttttgat 201  Q
    |||||||||||    
T  18641074 cagcttttgat 18641064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 203 - 324
Target Start/End: Complemental strand, 28920403 - 28920269
Alignment:
Q  203 tgcagcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaaccaaggtagtta-------------gtttgttacaacgtcc 289  Q
    ||||||||||||||||||||||||||| |||||||||| || |||||||||| ||||||||| ||||||||             |||||||| |||||||    
T  28920403 tgcagcttctgatgtcttcagaagcatagtctagtaatcaatcttggttagcatgttaaccagggtagttagtttattagaggagtttgttataacgtcc 28920304  T
Q  290 agttgtatatatactcactcatgtgttgtaaataa 324  Q
    |||||||||||||||||||||| ||||||||||||    
T  28920303 agttgtatatatactcactcatatgttgtaaataa 28920269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 389 - 466
Target Start/End: Complemental strand, 18649561 - 18649484
Alignment:
Q  389 tttcatcttgcttcgaaacaacttatttttcataagcacttctgttgtgcatagaacataatgaattgttctaacaat 466  Q
    ||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||    
T  18649561 tttcatcttgcttagaaacaacttattttttataagcacttctgctgtgcatagaacatagtgaattgttctaacaat 18649484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 203 - 312
Target Start/End: Original strand, 4315563 - 4315685
Alignment:
Q  203 tgcagcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaaccaaggtagttagtt-------------tgttacaacgtcc 289  Q
    |||||||||||||| |||||||||||  ||||||||| |||| |||||||||||||||||||||||||||||||             |||||||||||||    
T  4315563 tgcagcttctgatggcttcagaagcagagtctagtaacaaacgttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaacgtcc 4315662  T
Q  290 agttgtatatatactcactcatg 312  Q
    |||||||||||||||||||||||    
T  4315663 agttgtatatatactcactcatg 4315685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 28920472 - 28920392
Alignment:
Q  92 tattggaatattaatcaataactgttgttcagaatctggagtgcagcttctgaacatgagcttctgaagtgctgcttctga 172  Q
    ||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||| |||| |||||| ||||||||    
T  28920472 tattggaatattaatcaataattattgttcagaatctgaagtgcagcttctgaacatgagtttctaaagtgcagcttctga 28920392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 205 - 323
Target Start/End: Original strand, 55418421 - 55418523
Alignment:
Q  205 cagcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttacaacgtccagttgtatatatact 304  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||                ||||||| ||||||||||||||||||    
T  55418421 cagcttctgatgtcttcagaagcagagtctagtaataaaccttggttagcgtgttaac----------------ttacaacttccagttgtatatatact 55418504  T
Q  305 cactcatgtgttgtaaata 323  Q
    ||||||||| |||||||||    
T  55418505 cactcatgtattgtaaata 55418523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 32813593 - 32813667
Alignment:
Q  207 gcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgtta 281  Q
    |||| ||||||||| |||||||   |||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  32813593 gcttttgatgtctttagaagcagaatctagtaacaaaccttggttagcgtgttaacgaaggtagttagtttgtta 32813667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 324
Target Start/End: Original strand, 47743902 - 47743953
Alignment:
Q  273 agtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaataa 324  Q
    |||||||||||||||| ||||||| ||||| |||||||||||||||||||||    
T  47743902 agtttgttacaacgtctagttgtaaatatattcactcatgtgttgtaaataa 47743953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 167 - 283
Target Start/End: Original strand, 47743791 - 47743899
Alignment:
Q  167 ttctgaagtact-gcttctgaagtgcagcttttgatatgcagcttctgatgtcttcagaagcatggtctagtaataaaccttggttagcgtgttaaccaa 265  Q
    |||||||||||  ||||||||||| ||| || |||| ||||||||||||||||||||||||     |||||||| ||         ||||||||||||||    
T  47743791 ttctgaagtaccagcttctgaagtacagtttctgatgtgcagcttctgatgtcttcagaagttgaatctagtaacaa---------agcgtgttaaccaa 47743881  T
Q  266 ggtagttagtttgttaca 283  Q
    ||||||||||||||||||    
T  47743882 ggtagttagtttgttaca 47743899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 429
Target Start/End: Complemental strand, 41925198 - 41925151
Alignment:
Q  381 tctgttattttcatcttgcttcgaaacaacttatttttcataagcactt 429  Q
    ||||||||||||||||||||   ||||||||||||||| ||||||||||    
T  41925198 tctgttattttcatcttgctcttaaacaacttattttt-ataagcactt 41925151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 92 - 185
Target Start/End: Complemental strand, 44541575 - 44541482
Alignment:
Q  92 tattggaatattaatcaataactgttgttcagaatctggagtgcagcttctgaacatgagcttctgaagtgctgcttctgaagtactgcttctg 185  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || | |||||||    
T  44541575 tattggaatattaatcaataattgttgttcagaatctgaagtgcagcttctgaacatgagcttctgaagtgctgcttctgatgtgcagcttctg 44541482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 154 - 324
Target Start/End: Complemental strand, 44541541 - 44541358
Alignment:
Q  154 tctgaagtgctgcttctgaagtactgcttctgaagtgcagcttttgatatgcagcttctgatgtcttcagaagcatggtctagtaataaaccttggttag 253  Q
    |||||||||| |||||||||     ||||||||||||| |||| |||| ||||||||||| ||||||||||||||| ||||| |||  ||||||| ||||    
T  44541541 tctgaagtgcagcttctgaacatgagcttctgaagtgctgcttctgatgtgcagcttctgttgtcttcagaagcatagtctaataaccaaccttgattag 44541442  T
Q  254 cgtgttaaccaaggtagttagttt-------------gttacaacgtccagttgtatatatactcactcatgtgttgtaaataa 324  Q
     |||||||||| ||||||||||||             ||||||| |||||||||||||||||||||||||||||||||||||||    
T  44541441 tgtgttaaccagggtagttagtttgttagaggagtttgttacaatgtccagttgtatatatactcactcatgtgttgtaaataa 44541358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 464
Target Start/End: Complemental strand, 50778105 - 50778025
Alignment:
Q  381 tctgttattttcatcttgcttcgaaacaacttatttttcataagcacttctgttgtgcatagaacataatgaattgttctaaca 464  Q
    ||||||||  ||||||||||| |||||  |||||||| ||||||||||| |||||||||| ||||| ||| |||||||||||||    
T  50778105 tctgttataatcatcttgcttagaaactgcttatttt-cataagcacttttgttgtgcat-gaacaaaat-aattgttctaaca 50778025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 72402 - 72328
Alignment:
Q  17 tcagttcctgctatcgaaacataagcgaagttactaccttgaaagaatcgatcatgatcacaagccactaatatg 91  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  72402 tcagttcctgctatggaaacataagcgaagttactaccttgaaagaatcgatcatgatcacaagccactagtatg 72328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 466 - 530
Target Start/End: Complemental strand, 72331 - 72273
Alignment:
Q  466 tatgaacctaatgagtcgacaaccatcattaatttatggttatttctattccaccctcctttctt 530  Q
    |||||||||||||||||||||||||      ||||| ||||||||||||||||||||||||||||    
T  72331 tatgaacctaatgagtcgacaacca------atttacggttatttctattccaccctcctttctt 72273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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