View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15438_low_5 (Length: 466)

Name: NF15438_low_5
Description: NF15438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15438_low_5
NF15438_low_5
[»] chr3 (27 HSPs)
chr3 (320-456)||(6164321-6164457)
chr3 (320-456)||(6139004-6139142)
chr3 (320-457)||(13282953-13283095)
chr3 (122-272)||(6139206-6139368)
chr3 (37-173)||(6234331-6234461)
chr3 (388-456)||(6234110-6234178)
chr3 (393-456)||(6241896-6241959)
chr3 (79-188)||(6165116-6165225)
chr3 (117-189)||(13282725-13282797)
chr3 (395-453)||(6255127-6255185)
chr3 (34-105)||(7747777-7747848)
chr3 (37-83)||(6412425-6412471)
chr3 (148-187)||(6725825-6725864)
chr3 (219-272)||(6234280-6234333)
chr3 (143-188)||(6412524-6412569)
chr3 (34-83)||(6594925-6594974)
chr3 (393-433)||(6859282-6859322)
chr3 (393-433)||(7746936-7746976)
chr3 (34-78)||(13282678-13282722)
chr3 (202-264)||(6725891-6725953)
chr3 (209-254)||(6595077-6595122)
chr3 (201-254)||(6858650-6858703)
chr3 (43-80)||(6879255-6879292)
chr3 (201-269)||(13282821-13282883)
chr3 (393-433)||(6413163-6413203)
chr3 (393-433)||(6726520-6726560)
chr3 (154-186)||(6858591-6858623)
[»] scaffold0425 (1 HSPs)
scaffold0425 (201-254)||(15285-15338)


Alignment Details
Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 320 - 456
Target Start/End: Complemental strand, 6164457 - 6164321
Alignment:
Q  320 ccccatccatcttcctgtcttgttgattatttcacttcataaatcttgaaatctatggcctaataatgaaacaactcaagatatatgcattgatcatatc 419  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6164457 ccccatccatcctcctgtcttgttgattatttcacttcataaatcttgaaatcaatggcctaataatgaaacaactcaagatatatgcattgatcatatc 6164358  T
Q  420 tctctcgagccactttacgaaatccctctgacctatg 456  Q
    ||||| ||||||| |||||||||||||||||| ||||    
T  6164357 tctcttgagccacattacgaaatccctctgacttatg 6164321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 320 - 456
Target Start/End: Complemental strand, 6139142 - 6139004
Alignment:
Q  320 ccccatccatcttcctgtcttgttgattatttcacttcataaatcttgaaatctatggcctaataatgaaacaactcaagatatatgcattgatcatatc 419  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6139142 ccccatccatcttcctgtcttgttgattatttcaatttataaatcttgaaatctatggcctaataatgaaacaactcaagatatatgcattgatcatatc 6139043  T
Q  420 tc--tctcgagccactttacgaaatccctctgacctatg 456  Q
    ||  ||||||||||||||||||||||||| |||||||||    
T  6139042 tctctctcgagccactttacgaaatccctttgacctatg 6139004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 320 - 457
Target Start/End: Original strand, 13282953 - 13283095
Alignment:
Q  320 ccccatccatcttcctgtcttgttgatta-----tttcacttcataaatcttgaaatctatggcctaataatgaaacaactcaagatatatgcattgatc 414  Q
    |||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13282953 ccccatccatcttcctgtcttgttgattactccatttcacttcataaatcttgaaatctatggcctaataataaaacaactcaagatatatgcattgatc 13283052  T
Q  415 atatctctctcgagccactttacgaaatccctctgacctatgc 457  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  13283053 atatctctctcgagccactttacgaaatccctctgacttatgc 13283095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 122 - 272
Target Start/End: Complemental strand, 6139368 - 6139206
Alignment:
Q  122 tacttatgactctgagagcaggttaaacatttatttttatatttcaacaaaggtgggagctaaaaatg----gatatgaaata--------taacatcaa 209  Q
    ||||||||| ||| ||||||||||||| ||||||||| |||||||||||||||||||||||| |||||    || || || ||        |||||||||    
T  6139368 tacttatgattcttagagcaggttaaagatttattttcatatttcaacaaaggtgggagctacaaatgattggacataaattaatgaatattaacatcaa 6139269  T
Q  210 caataatacaagatggatatgctgttttacttctttgtaacacttcgtaaatccagagaacaa 272  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||    
T  6139268 caataatacaagatggataagttgttttacttctttgtaacacttcgcaaatccagagaacaa 6139206  T

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Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 37 - 173
Target Start/End: Complemental strand, 6234461 - 6234331
Alignment:
Q  37 aacagaaaacagtatggagaatatattcaatattaaatagcaagtattagttctcgttgtttacaccttcaactagccggccatctacttatgactctga 136  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||| || | |||||||||||| |||  || || ||||      |||||    
T  6234461 aacagaaatcagtatggagaatatattcaatattaaatagcaagtattagtactccttctatacaccttcaaccagcatgcaatatact------tctga 6234368  T
Q  137 gagcaggttaaacatttatttttatatttcaacaaag 173  Q
    |||||| ||||| ||||||||| ||||||||||||||    
T  6234367 gagcagcttaaagatttattttcatatttcaacaaag 6234331  T

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Target: chr3; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 388 - 456
Target Start/End: Complemental strand, 6234178 - 6234110
Alignment:
Q  388 aaacaactcaagatatatgcattgatcatatctctctcgagccactttacgaaatccctctgacctatg 456  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  6234178 aaacaactcaagatatatgcattgatcatatatctctcgagacactttacgaaatccctctgacctatg 6234110  T

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Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 393 - 456
Target Start/End: Complemental strand, 6241959 - 6241896
Alignment:
Q  393 actcaagatatatgcattgatcatatctctctcgagccactttacgaaatccctctgacctatg 456  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6241959 actcaagatatatgcattgatcatatctctctcgagccactttacggaatccctctgacctatg 6241896  T

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Target: chr3; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 79 - 188
Target Start/End: Complemental strand, 6165225 - 6165116
Alignment:
Q  79 agtattagttctcgttgtttacaccttcaactagccggccatctacttatgactctgagagcaggttaaacatttatttttatatttcaacaaaggtggg 178  Q
    |||||||||  || |||| |||||||||||| |||  || || |||||||||||||||||| |||||||| |||| |||| ||||||||| |||||||||    
T  6165225 agtattagtaatccttgtatacaccttcaaccagcatgcaatatacttatgactctgagagtaggttaaagatttgttttcatatttcaataaaggtggg 6165126  T
Q  179 agctaaaaat 188  Q
    ||||||||||    
T  6165125 agctaaaaat 6165116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 13282725 - 13282797
Alignment:
Q  117 ccatctacttatgactctgagagcaggttaaacatttatttttatatttcaacaaaggtgggagctaaaaatg 189  Q
    ||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||  |||||||||||    
T  13282725 ccatctacttatgactctgagagaaggttaaatatttattttcatatttcaacaaaggtgaaagctaaaaatg 13282797  T

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Target: chr3; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 395 - 453
Target Start/End: Complemental strand, 6255185 - 6255127
Alignment:
Q  395 tcaagatatatgcattgatcatatctctctcgagccactttacgaaatccctctgacct 453  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6255185 tcaagatataagcattgatcatatctctctcgagtcactttacgaaatccctctgacct 6255127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 7747848 - 7747777
Alignment:
Q  34 ttgaacagaaaacagtatggagaatatattcaatattaaatagcaagtattagttctcgttgtttacacctt 105  Q
    ||||||||||||||| ||||| |||||||||||||||| ||||||||||| ||| ||| |||| | ||||||    
T  7747848 ttgaacagaaaacagcatggacaatatattcaatattagatagcaagtatgagtactctttgtatgcacctt 7747777  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 6412425 - 6412471
Alignment:
Q  37 aacagaaaacagtatggagaatatattcaatattaaatagcaagtat 83  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||    
T  6412425 aacagaaaacagtatggacaatatattcaatattatatagcaagtat 6412471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 187
Target Start/End: Original strand, 6725825 - 6725864
Alignment:
Q  148 acatttatttttatatttcaacaaaggtgggagctaaaaa 187  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  6725825 acatttattttcatatttcaacaaaggtgggagctaaaaa 6725864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 272
Target Start/End: Complemental strand, 6234333 - 6234280
Alignment:
Q  219 aagatggatatgctgttttacttctttgtaacacttcgtaaatccagagaacaa 272  Q
    |||||||||||| |||||| |||||||||||||||| ||||||  |||||||||    
T  6234333 aagatggatatgttgttttccttctttgtaacacttagtaaatgtagagaacaa 6234280  T

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Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 6412524 - 6412569
Alignment:
Q  143 gttaaacatttatttttatatttcaacaaaggtgggagctaaaaat 188  Q
    |||| ||||||||||| |||||||||| ||||||||||||||||||    
T  6412524 gttagacatttattttcatatttcaacgaaggtgggagctaaaaat 6412569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 6594925 - 6594974
Alignment:
Q  34 ttgaacagaaaacagtatggagaatatattcaatattaaatagcaagtat 83  Q
    ||||||||||||||||||||| |||||| || |||||| |||||||||||    
T  6594925 ttgaacagaaaacagtatggacaatatactcgatattagatagcaagtat 6594974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 433
Target Start/End: Original strand, 6859282 - 6859322
Alignment:
Q  393 actcaagatatatgcattgatcatatctctctcgagccact 433  Q
    |||||||||||||||||||||||| |||||||| |||||||    
T  6859282 actcaagatatatgcattgatcatgtctctctctagccact 6859322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 433
Target Start/End: Complemental strand, 7746976 - 7746936
Alignment:
Q  393 actcaagatatatgcattgatcatatctctctcgagccact 433  Q
    ||||||| |||||| ||||||||||||||||||||||||||    
T  7746976 actcaaggtatatgtattgatcatatctctctcgagccact 7746936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 13282678 - 13282722
Alignment:
Q  34 ttgaacagaaaacagtatggagaatatattcaatattaaatagca 78  Q
    |||||||||||||||||| || ||||||||||||||||| |||||    
T  13282678 ttgaacagaaaacagtattgacaatatattcaatattaactagca 13282722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 264
Target Start/End: Original strand, 6725891 - 6725953
Alignment:
Q  202 aacatcaacaataatacaagatggatatgctgttttacttctttgtaacacttcgtaaatcca 264  Q
    ||||| ||||| ||| ||||| ||||||| ||||||||||||||| ||||||| | |||||||    
T  6725891 aacattaacaacaattcaagaaggatatgttgttttacttctttgaaacactttgaaaatcca 6725953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 6595077 - 6595122
Alignment:
Q  209 acaataatacaagatggatatgctgttttacttctttgtaacactt 254  Q
    |||| ||| ||||||||||||| ||||||||||||||| |||||||    
T  6595077 acaacaattcaagatggatatgttgttttacttctttgaaacactt 6595122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 6858650 - 6858703
Alignment:
Q  201 taacatcaacaataatacaagatggatatgctgttttacttctttgtaacactt 254  Q
    |||||| ||||| ||||||| | ||||||| ||||||||||||||| |||||||    
T  6858650 taacattaacaacaatacaataaggatatgttgttttacttctttgaaacactt 6858703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 6879292 - 6879255
Alignment:
Q  43 aaacagtatggagaatatattcaatattaaatagcaag 80  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  6879292 aaacagtatggacaatatattcaatattgaatagcaag 6879255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 13282821 - 13282883
Alignment:
Q  201 taacatcaacaataatacaagatggatatgctgttttacttctttgtaacacttcgtaaatccagagaa 269  Q
    |||||||||||||||||| ||||||||||| |||||      ||||||||| |||||||||| ||||||    
T  13282821 taacatcaacaataatactagatggatatgttgttt------tttgtaacagttcgtaaatctagagaa 13282883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 433
Target Start/End: Original strand, 6413163 - 6413203
Alignment:
Q  393 actcaagatatatgcattgatcatatctctctcgagccact 433  Q
    ||||| |||||||||||||||||||||||| || |||||||    
T  6413163 actcatgatatatgcattgatcatatctctttctagccact 6413203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 433
Target Start/End: Original strand, 6726520 - 6726560
Alignment:
Q  393 actcaagatatatgcattgatcatatctctctcgagccact 433  Q
    ||||| |||||||||||||||||||||||| || |||||||    
T  6726520 actcatgatatatgcattgatcatatctctttctagccact 6726560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 6858591 - 6858623
Alignment:
Q  154 atttttatatttcaacaaaggtgggagctaaaa 186  Q
    ||||| |||||||||||||||||||||||||||    
T  6858591 attttcatatttcaacaaaggtgggagctaaaa 6858623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 15285 - 15338
Alignment:
Q  201 taacatcaacaataatacaagatggatatgctgttttacttctttgtaacactt 254  Q
    |||||| ||||| ||||||| | ||||||| ||||||||||||||| |||||||    
T  15285 taacattaacaacaatacaataaggatatgttgttttacttctttgaaacactt 15338  T

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