View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15438_low_6 (Length: 454)
Name: NF15438_low_6
Description: NF15438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15438_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 373 - 452
Target Start/End: Original strand, 50247709 - 50247788
Alignment:
| Q |
373 |
gtgtgaaggatgttttatatagtcaatagacattatactttattgacttgaggccgacaaacattacctatgcttctcct |
452 |
Q |
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| T |
50247709 |
gtgtgtaggatgttttatatagtcactagacattatactttattgacttgaggccgacaaacattacttatgcttctcct |
50247788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 423
Target Start/End: Complemental strand, 50247673 - 50247637
Alignment:
| Q |
387 |
ttatatagtcaatagacattatactttattgacttga |
423 |
Q |
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| T |
50247673 |
ttatatagtcactagacattatactttattgacttga |
50247637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 38 - 127
Target Start/End: Original strand, 7498519 - 7498609
Alignment:
| Q |
38 |
tgatttcaaccatttcatttattattctatgaaatttaaattttcaaatggtatatgtcgtgcagttttggtgtca-aattgataagagaa |
127 |
Q |
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| T |
7498519 |
tgatttcaacaagttcatttagtatcatataaaaattaaattttcaaatggcatgtgtcatgctgttttggtgtcacaattgataagagaa |
7498609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 301
Target Start/End: Complemental strand, 21546088 - 21546021
Alignment:
| Q |
235 |
ggagaagcagccacaaataagtatgggtgttattttt-ggttgattagaacatgattaaatgaatatt |
301 |
Q |
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| T |
21546088 |
ggagaagtagccacaaatatgtatgagtactattttttggttgattataacatgattaaatgaatatt |
21546021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 422
Target Start/End: Original strand, 7498691 - 7498763
Alignment:
| Q |
350 |
gaggcttattttaattttgcttcgtgtgaaggatgttttatatagtcaatagacattatactttattgacttg |
422 |
Q |
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| T |
7498691 |
gaggcttatttagattttactatgtgtgtaggatgttttataaagccaatagaccttatgctttattgacttg |
7498763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 37685242 - 37685152
Alignment:
| Q |
38 |
tgatttcaaccatttcatttattattctatgaaatttaaattttcaaatggtatatgtcgtgcagttttggtgtca-aattgataagagaa |
127 |
Q |
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| T |
37685242 |
tgatttcaacaagttcatttagtattatataaaaattaaattttcaaatggcatgtgtcatgctgttttggtgtcacaattgataaaagaa |
37685152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 38 - 127
Target Start/End: Original strand, 46885092 - 46885182
Alignment:
| Q |
38 |
tgatttcaaccatttcatttattattctatgaaatttaaattttcaaatggtatatgtcgtgcagttttggtgtca-aattgataagagaa |
127 |
Q |
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| T |
46885092 |
tgatttgaacaatttcatttagtatcctataaaaaataaattttcaaatggcatgtgtcatgtagttttggtgtcacaattgataagagaa |
46885182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 46885285 - 46885336
Alignment:
| Q |
248 |
caaataagtatgggtgttatttt-tggttgattagaacatgattaaatgaat |
298 |
Q |
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| T |
46885285 |
caaataagtatgggtattattttttggttgattataacatgattaaatgaat |
46885336 |
T |
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