View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15439_high_11 (Length: 409)
Name: NF15439_high_11
Description: NF15439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15439_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 39471011 - 39471392
Alignment:
| Q |
18 |
actgtttctctgaattgttctttgatatacctgnnnnnnnnnnncctttctttaggaacaggaatagatgaattcgtgtagagatttagtatcataataa |
117 |
Q |
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| T |
39471011 |
actgtttctctgaattgttctttgatatacctgtttttttttt-cctttctttaggaacaggaatagatgaattcgtgtagagatttagtatcataataa |
39471109 |
T |
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| Q |
118 |
aagaaatctttgtgagtgatgtcatggctttgcgggatggcatgatatgagaactttatggcatgagattgaaatgtttgtctttatattatttatggga |
217 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39471110 |
aagaaacctttgtgagtgatgtcatggctttgcgggatggcatgatatgagaactttatggcatgagattgaaatgtttgtctttatattatttatggga |
39471209 |
T |
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| Q |
218 |
gaattgatggatggtgaaggctatttactactaccttatatatggaccgtgcaagtttttgtggtgtacaagaatatgtaaaaactatctg-nnnnnnnn |
316 |
Q |
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| T |
39471210 |
gaattgatggatggtgaaggctatttactactaccttatatatggaccgtgcaagtttttgtggtgtacaagaatatgtaaaaactatctgaaaaaagga |
39471309 |
T |
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| Q |
317 |
nnnnnnnntgtaaaactagattgttgttattatcttgttggaattatttattattcaataatatgtgtggtgtgtggtctgtg |
399 |
Q |
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| T |
39471310 |
aaaaaaaatgtaaaactggattgttgttattatcttgttggaattatttattattcaataatatgtgtggtgtgtggtgtgtg |
39471392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 39464853 - 39464898
Alignment:
| Q |
105 |
agtatcataataaaagaaatctttgtgagtgatgtcatggctttgc |
150 |
Q |
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| T |
39464853 |
agtatcataataagaggaatctttgtgagtgatgtcatggctttgc |
39464898 |
T |
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