View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15439_high_20 (Length: 293)
Name: NF15439_high_20
Description: NF15439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15439_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 36 - 261
Target Start/End: Original strand, 14728793 - 14729018
Alignment:
| Q |
36 |
cttcaagagataaaattatccaaagtttgtaatttaagggaacaaaatgaaa-gcaaaagaatttaaaggaataaagtgagacctaaaattaccttaaga |
134 |
Q |
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| T |
14728793 |
cttcaaaagataaaactatccaaagtttgtaatttaagggaacaaaatgaaacgcaaaagaatttaaaggaataaagtgagacataaaattaatttaaga |
14728892 |
T |
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| Q |
135 |
gaccaaaagtataatttagtcttttttaactttgtatattttcaatacccatacttattaatcataaagggtgttaatttttaattcaaattagttgata |
234 |
Q |
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| T |
14728893 |
gaccaaaagtataatttagtctttt-taactttttatattttcaatacccatacttattaatcataaagggtgttaatttttaattcaagttagttgata |
14728991 |
T |
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| Q |
235 |
tgataatgtagttaaaattgtttgcta |
261 |
Q |
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| T |
14728992 |
taataatgtagttaaaattgtttgcta |
14729018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 153
Target Start/End: Complemental strand, 20203799 - 20203708
Alignment:
| Q |
61 |
tttgtaatttaagggaacaaaatgaaagcaaaagaatttaaaggaataaagtgagacctaaaattaccttaagagaccaaaagtataatttag |
153 |
Q |
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| T |
20203799 |
tttgtaatttaagggaccaaaataaaatgaaaaaaacttaagggaataaagagaaacctaaaattaacttaa-agaccaaaagtataatttag |
20203708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 26387163 - 26387207
Alignment:
| Q |
108 |
aaagtgagacctaaaattaccttaagagaccaaaagtataattta |
152 |
Q |
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| T |
26387163 |
aaagtgagacctaaaattaacttaaggaaccaaaaatataattta |
26387207 |
T |
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