View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15439_high_21 (Length: 291)

Name: NF15439_high_21
Description: NF15439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15439_high_21
NF15439_high_21
[»] chr1 (3 HSPs)
chr1 (54-286)||(12636986-12637218)
chr1 (54-273)||(15885742-15885964)
chr1 (62-273)||(12609903-12610117)
[»] scaffold0059 (1 HSPs)
scaffold0059 (75-270)||(62154-62349)
[»] scaffold0554 (1 HSPs)
scaffold0554 (126-287)||(6609-6770)
[»] chr3 (14 HSPs)
chr3 (126-286)||(23036155-23036315)
chr3 (126-286)||(23039026-23039186)
chr3 (128-273)||(23145918-23146063)
chr3 (132-286)||(23148743-23148897)
chr3 (128-265)||(23024278-23024415)
chr3 (81-273)||(22971949-22972141)
chr3 (75-287)||(23140030-23140242)
chr3 (81-271)||(22946404-22946594)
chr3 (75-273)||(23017060-23017258)
chr3 (75-286)||(23032699-23032895)
chr3 (75-273)||(22941378-22941576)
chr3 (75-265)||(22831841-22832031)
chr3 (191-271)||(22986277-22986357)
chr3 (81-169)||(22916681-22916769)
[»] chr6 (2 HSPs)
chr6 (128-286)||(21779798-21779956)
chr6 (141-273)||(12438302-12438434)
[»] chr8 (1 HSPs)
chr8 (75-265)||(5594034-5594224)
[»] chr5 (2 HSPs)
chr5 (230-273)||(7154492-7154535)
chr5 (132-184)||(41465802-41465854)
[»] chr2 (1 HSPs)
chr2 (239-271)||(2433650-2433682)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 54 - 286
Target Start/End: Complemental strand, 12637218 - 12636986
Alignment:
Q  54 cctccaactcctcttttacttagagaatgtggacaagcatgtgaaattgaagggtatcatataccagccaaaagtaaggtgatagtaaatgcatggacaa 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12637218 cctccaactcctcttttacttagagaatgtggacaagcatgtgaaattgaagggtatcatataccagccaaaagtaaggtgatagtaaatgcatggacaa 12637119  T
Q  154 ttggtagagatccaaagtactggactgaaccagagaggtttcatccagagagattcattggtagctctattgactacaaaggaaataattttgagtacat 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12637118 ttggtagagatccaaagtactggactgaaccagagaggtttcatccagagagattcattggtagctctattgactacaaaggaaataattttgagtacat 12637019  T
Q  254 tccttttggtgcaggaagaataatctacccagg 286  Q
    |||||||||||||||||||| ||| | ||||||    
T  12637018 tccttttggtgcaggaagaagaatatgcccagg 12636986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 54 - 273
Target Start/End: Original strand, 15885742 - 15885964
Alignment:
Q  54 cctccaactcctcttttactt---agagaatgtggacaagcatgtgaaattgaagggtatcatataccagccaaaagtaaggtgatagtaaatgcatgga 150  Q
    |||||| ||||||||||||||   |||||||||| |||||||||||| ||||| || |||||||||||| ||||||| ||||||||||| |||||||||     
T  15885742 cctccagctcctcttttacttccaagagaatgtgaacaagcatgtgagattgatggttatcatataccaaccaaaagcaaggtgatagtcaatgcatggg 15885841  T
Q  151 caattggtagagatccaaagtactggactgaaccagagaggtttcatccagagagattcattggtagctctattgactacaaaggaaataattttgagta 250  Q
    | ||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  15885842 cgattggaagagatccaaagtattggactgaaccagagaggttttatccagagagattcattggtagctctattgactataaagggaataattttgagta 15885941  T
Q  251 cattccttttggtgcaggaagaa 273  Q
    ||||||||||||| | |||||||    
T  15885942 cattccttttggttctggaagaa 15885964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 62 - 273
Target Start/End: Complemental strand, 12610117 - 12609903
Alignment:
Q  62 tcctcttttactt---agagaatgtggacaagcatgtgaaattgaagggtatcatataccagccaaaagtaaggtgatagtaaatgcatggacaattggt 158  Q
    |||||||||||||   ||||||||||||||||||||||| ||||| ||||||| |||||||  |||||| ||||||||||| ||||||||| | |||||     
T  12610117 tcctcttttacttccaagagaatgtggacaagcatgtgagattgatgggtatcgtataccaatcaaaagcaaggtgatagtcaatgcatgggcgattgga 12610018  T
Q  159 agagatccaaagtactggactgaaccagagaggtttcatccagagagattcattggtagctctattgactacaaaggaaataattttgagtacattcctt 258  Q
    ||||||||||||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |    
T  12610017 agagatccaaagtactggactgaaccagagaagttttatccggagagattcatcggtagctctattgactacaaagggaataattttgagtacattccct 12609918  T
Q  259 ttggtgcaggaagaa 273  Q
    ||||||| |||||||    
T  12609917 ttggtgctggaagaa 12609903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 75 - 270
Target Start/End: Complemental strand, 62349 - 62154
Alignment:
Q  75 agagaatgtggacaagcatgtgaaattgaagggtatcatataccagccaaaagtaaggtgatagtaaatgcatggacaattggtagagatccaaagtact 174  Q
    ||||||||| || |||||||||| ||||| |||||||||||||||   ||||  ||| ||||||| ||||||||| |||| || |||||||||| |||||    
T  62349 agagaatgtagagaagcatgtgagattgatgggtatcatataccaatgaaaacaaagctgatagttaatgcatgggcaatcggaagagatccaaggtact 62250  T
Q  175 ggactgaaccagagaggtttcatccagagagattcattggtagctctattgactacaaaggaaataattttgagtacattccttttggtgcaggaa 270  Q
    |||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||| || |||||||| |||||||||||||||||||| ||||    
T  62249 ggacggaaccagagaggttttatccagagagattcattggtagttctattgactacaacgggaataatttcgagtacattccttttggtgctggaa 62154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 126 - 287
Target Start/End: Original strand, 6609 - 6770
Alignment:
Q  126 agtaaggtgatagtaaatgcatggacaattggtagagatccaaagtactggactgaaccagagaggtttcatccagagagattcattggtagctctattg 225  Q
    |||||||||||| | ||||| ||| ||||||  ||||||||||| | |||||||||||||||||||||| ||||||||||||||| ||  ||| ||||||    
T  6609 agtaaggtgataatcaatgcttgggcaattgcaagagatccaaacttctggactgaaccagagaggttttatccagagagattcactgacagcactattg 6708  T
Q  226 actacaaaggaaataattttgagtacattccttttggtgcaggaagaataatctacccagga 287  Q
    |||| |||||   ||||||||||||||||||||||||||| ||||||| ||| | |||||||    
T  6709 actataaagggggtaattttgagtacattccttttggtgctggaagaagaatttgcccagga 6770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 126 - 286
Target Start/End: Complemental strand, 23036315 - 23036155
Alignment:
Q  126 agtaaggtgatagtaaatgcatggacaattggtagagatccaaagtactggactgaaccagagaggtttcatccagagagattcattggtagctctattg 225  Q
    |||||||| | | ||||||| ||| ||||||  ||||||||||| |||||||||||||||||||| ||| |||| ||||||||||| |  ||| ||||||    
T  23036315 agtaaggtaacaataaatgcttgggcaattgcaagagatccaaattactggactgaaccagagagattttatcccgagagattcatcgacagcgctattg 23036216  T
Q  226 actacaaaggaaataattttgagtacattccttttggtgcaggaagaataatctacccagg 286  Q
    |||||||||| | ||| ||||||||||||||||||||||| ||||||| ||| | ||||||    
T  23036215 actacaaagggagtaactttgagtacattccttttggtgccggaagaagaatatgcccagg 23036155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 126 - 286
Target Start/End: Complemental strand, 23039186 - 23039026
Alignment:
Q  126 agtaaggtgatagtaaatgcatggacaattggtagagatccaaagtactggactgaaccagagaggtttcatccagagagattcattggtagctctattg 225  Q
    |||||||||||||| ||||| ||| ||||||  ||||||||||| ||||||||||| || ||||| ||| |||||||||||||| |||  ||| | ||||    
T  23039186 agtaaggtgatagtcaatgcttgggcaattgcaagagatccaaattactggactgagccggagagattttatccagagagattccttgacagcgccattg 23039087  T
Q  226 actacaaaggaaataattttgagtacattccttttggtgcaggaagaataatctacccagg 286  Q
    |||| ||||||| ||||| ||||||||||||||||||||| ||||||| ||| | ||||||    
T  23039086 actataaaggaagtaattatgagtacattccttttggtgccggaagaagaatatgcccagg 23039026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 128 - 273
Target Start/End: Complemental strand, 23146063 - 23145918
Alignment:
Q  128 taaggtgatagtaaatgcatggacaattggtagagatccaaagtactggactgaaccagagaggtttcatccagagagattcattggtagctctattgac 227  Q
    ||||||| |||| ||||| ||| || |||  ||||||||||| |||||||||||||||||||||||| |||||||||||||||| |  |||  |||||||    
T  23146063 taaggtgttagtcaatgcttgggcagttgcaagagatccaaactactggactgaaccagagaggttttatccagagagattcatcgacagcgatattgac 23145964  T
Q  228 tacaaaggaaataattttgagtacattccttttggtgcaggaagaa 273  Q
    || ||||| | ||| ||||||||||||||||||||||| |||||||    
T  23145963 tataaagggagtaactttgagtacattccttttggtgctggaagaa 23145918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 132 - 286
Target Start/End: Complemental strand, 23148897 - 23148743
Alignment:
Q  132 gtgatagtaaatgcatggacaattggtagagatccaaagtactggactgaaccagagaggtttcatccagagagattcattggtagctctattgactaca 231  Q
    |||||| | ||||| ||| ||||||  |||||| |||| |||||||||||||||||||||||| ||||||||||||||||||  |||  ||||||||| |    
T  23148897 gtgataatcaatgcttgggcaattgcaagagattcaaactactggactgaaccagagaggttttatccagagagattcattgaaagcgatattgactata 23148798  T
Q  232 aaggaaataattttgagtacattccttttggtgcaggaagaataatctacccagg 286  Q
    |||| | ||| || |||||||||||||||||||| ||||||| ||| | ||||||    
T  23148797 aagggagtaacttcgagtacattccttttggtgccggaagaagaatatgcccagg 23148743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 128 - 265
Target Start/End: Complemental strand, 23024415 - 23024278
Alignment:
Q  128 taaggtgatagtaaatgcatggacaattggtagagatccaaagtactggactgaaccagagaggtttcatccagagagattcattggtagctctattgac 227  Q
    |||||||||||| ||||| ||| ||||||  ||||||||||| |||||||| ||||||||||||||| |||||||||||||||| | |||   |||||||    
T  23024415 taaggtgatagtcaatgcttgggcaattgcaagagatccaaattactggaccgaaccagagaggttttatccagagagattcatcgatagtgatattgac 23024316  T
Q  228 tacaaaggaaataattttgagtacattccttttggtgc 265  Q
    || ||||| | ||| |||||||| ||||||||||||||    
T  23024315 tataaagggagtaactttgagtatattccttttggtgc 23024278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 81 - 273
Target Start/End: Complemental strand, 22972141 - 22971949
Alignment:
Q  81 tgtggacaagcatgtgaaattgaagggtatcatataccagccaaaagtaaggtgatagtaaatgcatggacaattggtagagatccaaagtactggactg 180  Q
    ||||||||||| ||||| ||||| || ||||| ||||||  |||||||| ||||||| | ||||| ||| ||||||| || |||||||| || |||||||    
T  22972141 tgtggacaagcttgtgagattgatggttatcacataccaatcaaaagtagggtgataatcaatgcttgggcaattggaagggatccaaaatattggactg 22972042  T
Q  181 aaccagagaggtttcatccagagagattcattggtagctctattgactacaaaggaaataattttgagtacattccttttggtgcaggaagaa 273  Q
    | ||||| | |||| |||| || ||||| |||| ||| ||| |||| | ||||||||  ||||||||||||||||| |||||||| |||||||    
T  22972041 atccagataagttttatcctgaaagatttattgatagttctcttgatttcaaaggaacaaattttgagtacattccatttggtgctggaagaa 22971949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 75 - 287
Target Start/End: Complemental strand, 23140242 - 23140030
Alignment:
Q  75 agagaatgtggacaagcatgtgaaattgaagggtatcatataccagccaaaagtaaggtgatagtaaatgcatggacaattggtagagatccaaagtact 174  Q
    ||||| ||||| ||||||||||| ||  | || ||||| ||||||   || | ||||||| | || ||||||||| |||| |  ||||||||||| ||||    
T  23140242 agagagtgtggtcaagcatgtgagatacatggttatcacataccatttaagactaaggtggtcgtcaatgcatgggcaatcgcgagagatccaaactact 23140143  T
Q  175 ggactgaaccagagaggtttcatccagagagattcattggtagctctattgactacaaaggaaataattttgagtacattccttttggtgcaggaagaat 274  Q
    |||||||||||||||  ||| |||||||||||||||| || | | |||||||||| ||||| | | ||||||||||||||||||||||||| ||| |||     
T  23140142 ggactgaaccagagaaattttatccagagagattcatgggaaacactattgactataaagggagtgattttgagtacattccttttggtgcgggacgaag 23140043  T
Q  275 aatctacccagga 287  Q
    ||| | |||||||    
T  23140042 aatatgcccagga 23140030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 81 - 271
Target Start/End: Complemental strand, 22946594 - 22946404
Alignment:
Q  81 tgtggacaagcatgtgaaattgaagggtatcatataccagccaaaagtaaggtgatagtaaatgcatggacaattggtagagatccaaagtactggactg 180  Q
    |||| |||||||||||| ||||| || ||||| ||||||  ||| |||| ||||||| | ||||| ||| ||||||| || |||||||| || |||||||    
T  22946594 tgtgcacaagcatgtgagattgatggttatcacataccaatcaatagtagggtgataatcaatgcttgggcaattggaagggatccaaaatattggactg 22946495  T
Q  181 aaccagagaggtttcatccagagagattcattggtagctctattgactacaaaggaaataattttgagtacattccttttggtgcaggaag 271  Q
    | ||||| | |||| |||| || ||||| |||| ||| ||| |||| | ||||||||  ||||||||||||||||| |||||||| |||||    
T  22946494 atccagataagttttatcctgaaagatttattgatagttctgttgatttcaaaggaacaaattttgagtacattccatttggtgccggaag 22946404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 75 - 273
Target Start/End: Complemental strand, 23017258 - 23017060
Alignment:
Q  75 agagaatgtggacaagcatgtgaaattgaagggtatcatataccagccaaaagtaaggtgatagtaaatgcatggacaattggtagagatccaaagtact 174  Q
    |||||||||||  |||||||||| ||  | || ||||| |||||||  || | |||||||||| | ||||| ||| |||| |  ||||||||||| ||||    
T  23017258 agagaatgtggtaaagcatgtgagatacatggttatcacataccagttaagactaaggtgataattaatgcttgggcaatcgcaagagatccaaactact 23017159  T
Q  175 ggactgaaccagagaggtttcatccagagagattcattggtagctctattgactacaaaggaaataattttgagtacattccttttggtgcaggaagaa 273  Q
    ||||||||||||||| |||| ||||||||||||||||||  | |  ||||||||| ||||| | ||| || || ||||||||||||||||  |||||||    
T  23017158 ggactgaaccagagaagttttatccagagagattcattgacaacggtattgactataaagggagtaacttcgaatacattccttttggtggtggaagaa 23017060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 286
Target Start/End: Complemental strand, 23032895 - 23032699
Alignment:
Q  75 agagaatgtggacaagcatgtgaaattgaagggtatcatataccagccaaaagtaaggtgatagtaaatgcatggacaattggtagagatccaaagtact 174  Q
    |||||||| || ||||||||||| ||  | || ||||| ||||||   ||||||||||||||||| ||||| ||| ||||||  ||||||||||| ||||    
T  23032895 agagaatgcggtcaagcatgtgagataaatggttatcacataccaattaaaagtaaggtgatagtcaatgcttgggcaattgcaagagatccaaactact 23032796  T
Q  175 ggactgaaccagagaggtttcatccagagagattcattggtagctctattgactacaaaggaaataattttgagtacattccttttggtgcaggaagaat 274  Q
    ||||||||||||               |||||||||| |  ||| |||||||||| ||||||| |||||||||||||||||| |||||||| |||||||     
T  23032795 ggactgaaccag---------------agagattcatcgacagcgctattgactataaaggaagtaattttgagtacattccctttggtgccggaagaag 23032711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 273
Target Start/End: Original strand, 22941378 - 22941576
Alignment:
Q  75 agagaatgtggacaagcatgtgaaattgaagggtatcatataccagccaaaagtaaggtgatagtaaatgcatggacaattggtagagatccaaagtact 174  Q
    ||||||||||||||||||||||||||  | |||||| |||||||    ||||| || |||||||| ||||| ||| | ||||| |||||||||||  | |    
T  22941378 agagaatgtggacaagcatgtgaaataaatgggtatgatataccttttaaaagcaaagtgatagtgaatgcttgggccattggaagagatccaaatcatt 22941477  T
Q  175 ggactgaaccagagaggtttcatccagagagattcattggtagctctattgactacaaaggaaataattttgagtacattccttttggtgcaggaagaa 273  Q
    ||  ||| |||||||| ||| |||| || || || ||||  || | | | || || || |||||||||||||||| |||||| |||||||| |||||||    
T  22941478 gggatgacccagagagattttatcctgaaaggtttattgaaagttgtgtagattataagggaaataattttgagttcattccatttggtgctggaagaa 22941576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 265
Target Start/End: Complemental strand, 22832031 - 22831841
Alignment:
Q  75 agagaatgtggacaagcatgtgaaattgaagggtatcatataccagccaaaagtaaggtgatagtaaatgcatggacaattggtagagatccaaagtact 174  Q
    |||||||||||| |||||||||| ||  | |||||| |||||||    ||||| || |||||||| ||||| ||| | ||||| |||||||||||  | |    
T  22832031 agagaatgtggaaaagcatgtgagataaatgggtatgatataccttttaaaagcaaagtgatagtgaatgcttgggctattggaagagatccaaatcatt 22831932  T
Q  175 ggactgaaccagagaggtttcatccagagagattcattggtagctctattgactacaaaggaaataattttgagtacattccttttggtgc 265  Q
    ||   || ||||| || ||| |||| || |||||||||| ||| | | | ||||| || || ||||||||||||| |||||||||||||||    
T  22831931 gggacgacccagaaagattttatcctgaaagattcattgatagttgtgtggactataagggtaataattttgagttcattccttttggtgc 22831841  T

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Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 191 - 271
Target Start/End: Complemental strand, 22986357 - 22986277
Alignment:
Q  191 gtttcatccagagagattcattggtagctctattgactacaaaggaaataattttgagtacattccttttggtgcaggaag 271  Q
    |||| |||| ||||| || |||| ||| |||||||| | |||||||| |||||||||||||||||| |||||||| |||||    
T  22986357 gttttatcctgagaggtttattgatagttctattgatttcaaaggaactaattttgagtacattccatttggtgctggaag 22986277  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 169
Target Start/End: Original strand, 22916681 - 22916769
Alignment:
Q  81 tgtggacaagcatgtgaaattgaagggtatcatataccagccaaaagtaaggtgatagtaaatgcatggacaattggtagagatccaaa 169  Q
    ||||||||||||||||||||  | ||||||  |||||||   ||||| || |||||||| ||||| ||| | ||||| |||||||||||    
T  22916681 tgtggacaagcatgtgaaataaatgggtatggtataccatttaaaagcaaagtgatagtgaatgcttgggccattggaagagatccaaa 22916769  T

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Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 128 - 286
Target Start/End: Complemental strand, 21779956 - 21779798
Alignment:
Q  128 taaggtgatagtaaatgcatggacaattggtagagatccaaagtactggactgaaccagagaggtttcatccagagagattcattggtagctctattgac 227  Q
    |||||||||| | ||||| ||| ||||||  ||||||||||| ||||||||||||||||||| |||| |||||||||||||||| | ||||  |||||||    
T  21779956 taaggtgataatcaatgcttgggcaattgcaagagatccaaactactggactgaaccagagatgttttatccagagagattcatcgatagcgatattgac 21779857  T
Q  228 tacaaaggaaataattttgagtacattccttttggtgcaggaagaataatctacccagg 286  Q
    |  ||||| | |||||||||||||||||| |||||||| ||||||| ||| | ||||||    
T  21779856 tttaaagggagtaattttgagtacattccatttggtgccggaagaagaatatgcccagg 21779798  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 273
Target Start/End: Complemental strand, 12438434 - 12438302
Alignment:
Q  141 aatgcatggacaattggtagagatccaaagtactggactgaaccagagaggtttcatccagagagattcattggtagctctattgactacaaaggaaata 240  Q
    ||||||||| ||||||| ||||| |||||||| |||| ||||  ||| | |||| |||| |||||||| |||| | |  | ||||| ||||||||   ||    
T  12438434 aatgcatgggcaattggaagagacccaaagtattggaatgaaggagaaaagtttaatcctgagagatttattgattgtccaattgattacaaagggtcta 12438335  T
Q  241 attttgagtacattccttttggtgcaggaagaa 273  Q
    |||| ||||  || ||||||||||| |||||||    
T  12438334 atttcgagtttataccttttggtgctggaagaa 12438302  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 265
Target Start/End: Original strand, 5594034 - 5594224
Alignment:
Q  75 agagaatgtggacaagcatgtgaaattgaagggtatcatataccagccaaaagtaaggtgatagtaaatgcatggacaattggtagagatccaaagtact 174  Q
    |||||||||||| |||||||||| ||  | |||||| |||||||    ||||| || |||||||| ||||| ||| | ||||| |||||||||||  | |    
T  5594034 agagaatgtggaaaagcatgtgagataaatgggtatgatataccttttaaaagcaaagtgatagtgaatgcttgggctattggaagagatccaaatcatt 5594133  T
Q  175 ggactgaaccagagaggtttcatccagagagattcattggtagctctattgactacaaaggaaataattttgagtacattccttttggtgc 265  Q
    ||   || ||||| || ||| |||| || |||||||||| ||| | | | ||||| || || ||||||||||||| |||||||||||||||    
T  5594134 gggacgacccagaaagattttatcctgaaagattcattgatagttgtgtggactataagggtaataattttgagttcattccttttggtgc 5594224  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 273
Target Start/End: Original strand, 7154492 - 7154535
Alignment:
Q  230 caaaggaaataattttgagtacattccttttggtgcaggaagaa 273  Q
    ||||||||||||||||||||| |||||||||||||| |||||||    
T  7154492 caaaggaaataattttgagtatattccttttggtgctggaagaa 7154535  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 41465802 - 41465854
Alignment:
Q  132 gtgatagtaaatgcatggacaattggtagagatccaaagtactggactgaacc 184  Q
    |||||||||||||||||| | ||||| |||||||||||||| |||| ||||||    
T  41465802 gtgatagtaaatgcatgggcgattggaagagatccaaagtattggagtgaacc 41465854  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 2433650 - 2433682
Alignment:
Q  239 taattttgagtacattccttttggtgcaggaag 271  Q
    ||||||||||||||| |||||||||||||||||    
T  2433650 taattttgagtacataccttttggtgcaggaag 2433682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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