View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15439_high_23 (Length: 262)

Name: NF15439_high_23
Description: NF15439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15439_high_23
NF15439_high_23
[»] chr5 (3 HSPs)
chr5 (78-262)||(27236948-27237132)
chr5 (78-262)||(27215345-27215534)
chr5 (78-164)||(27201170-27201259)


Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 78 - 262
Target Start/End: Complemental strand, 27237132 - 27236948
Alignment:
Q  78 atggaatgattgacttggcttggtgtatagggtaaactactatctgttgaaaatggcatactggaaaaggagaacagaaggttagtgatgaaatacatgg 177  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  27237132 atggaatgactgacttggcttggtgtatagggtaaactactatctgttgaaaatggcatattggaaaaggagaacagaaggttagtgatgaaatacaagg 27237033  T
Q  178 aaaggagtcatacagaatctggtgggaagcttaccaatagttcatctgcgaaggtaagaatcataggggtgtgctgattttgcat 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27237032 aaaggagtcatacagaatctggtgggaagcttaccaatagttcatctgcgaaggtaagaatcataggggtgtgctgattttgcat 27236948  T

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Target: chr5; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 78 - 262
Target Start/End: Complemental strand, 27215534 - 27215345
Alignment:
Q  78 atggaatgattgacttggcttggtgta-----tagggtaaactactatctgttgaaaatggcatactggaaaaggagaacagaaggttagtgatgaaata 172  Q
    ||||||||| |||||||||||||||||     ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27215534 atggaatgactgacttggcttggtgtaaaccatagggtaaactactatctgttgaaaatggcatattggaaaaggagaacagaaggttagtgatgaaata 27215435  T
Q  173 catggaaaggagtcatacagaatctggtgggaagcttaccaatagttcatctgcgaaggtaagaatcataggggtgtgctgattttgcat 262  Q
    || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27215434 caaggaaaggagtcatacagaatctggtggaaagcttaccaatagttcatctgcgaaggtaagaatcataggggtgtgctgattttgcat 27215345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 164
Target Start/End: Complemental strand, 27201259 - 27201170
Alignment:
Q  78 atggaatgattgacttggcttggtgta-----tagggtaaactactatctgttgaaaatggcatactggaaaaggagaacagaaggttagtg 164  Q
    ||||||||| |||||||||||||||||     ||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||    
T  27201259 atggaatgactgacttggcttggtgtaaaccatagggtaaactactatctgttgaa--tggcatattggaaaaggagaacagaaggttagtg 27201170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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