View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15439_high_25 (Length: 243)
Name: NF15439_high_25
Description: NF15439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15439_high_25 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 41 - 225
Target Start/End: Complemental strand, 2447307 - 2447129
Alignment:
| Q |
41 |
atggaacaaaagtgtacaactctttttcttttagaattagaacaagtataacaaagtgaaagacaaggttatgcaaactattgagaacatatagaactag |
140 |
Q |
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| T |
2447307 |
atggaacaggagtgtacaactctttttcttttagaa------caagtataacaaagtgaaagacaaggttatgcaaactattgagaacatatagaactag |
2447214 |
T |
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| Q |
141 |
ttaaacggaacttaggaattccacaacactagaactgctaccctttttcaccgccatcttcagcaaagctccagaccataaaatg |
225 |
Q |
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| T |
2447213 |
ttaaacggaacttaggaattccacaacactagaactgctaccctttttcaccgccatcttcagcaaagctccagaccataaaatg |
2447129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 2485582 - 2485498
Alignment:
| Q |
141 |
ttaaacggaacttaggaattccacaacactagaactgctaccctttttcaccgccatcttcagcaaagctccagaccataaaatg |
225 |
Q |
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| T |
2485582 |
ttaaactgaacttaggaattcgacaacactagaactattaccccttttcaccaccatcttcagcaaggctccagaccacaaaatg |
2485498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 2634415 - 2634345
Alignment:
| Q |
148 |
gaacttaggaattccacaacactagaactgctaccctttttcaccgccatcttcagcaaagctccagacca |
218 |
Q |
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| T |
2634415 |
gaacttggggattccacaaccctaaaactactaccctttttcacggccatcttcagcaccgctccagacca |
2634345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 9564309 - 9564377
Alignment:
| Q |
157 |
aattccacaacactagaactgctaccctttttcaccgccatcttcagcaaagctccagaccataaaatg |
225 |
Q |
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| T |
9564309 |
aattccacgaccctaaaactacgatcctttttcaccgccatcttcagcaatactccagaccacaaaatg |
9564377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 217
Target Start/End: Complemental strand, 2657 - 2588
Alignment:
| Q |
148 |
gaacttaggaattccacaacactagaactgctaccctttttcaccgccatcttcagcaaagctccagacc |
217 |
Q |
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| T |
2657 |
gaacttaggaattccacaaccctaaaactattaccctttttcaccgccatattcagcaacgctccagacc |
2588 |
T |
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