View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15439_low_10 (Length: 465)
Name: NF15439_low_10
Description: NF15439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15439_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 38 - 449
Target Start/End: Complemental strand, 43153239 - 43152828
Alignment:
| Q |
38 |
cgtctggatttaaagaagatgaggttgttgggttttatatcttttagagatttttacannnnnnnnnaataaaaaccaaataatcaacaaatttaatttg |
137 |
Q |
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| T |
43153239 |
cgtctggatttaaagaagatgaggttgttgggttttatatcttttagagatttttacatttttttt-aataaaaaccaaataattaacaaatttaatttg |
43153141 |
T |
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| Q |
138 |
ttgttttggacatgttacatcaatcctgttatagacatgtgagcatctaataattacgtttgagnnnnnnnnnnnnnnn-acatagttaaacataattta |
236 |
Q |
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| T |
43153140 |
ttgttttggacatgttacatcaatcctgttatagacatgtgagcatctaataattacgtttgagttttttttttttttttacatagttaaacataattta |
43153041 |
T |
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| Q |
237 |
aaacaatgaccaaataatgcatattttgatacttaaacgacaaattttctaaataaaatcttaaagaactggctttgcccacaaaattaaagtatctctt |
336 |
Q |
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| T |
43153040 |
aaacaatgactaaataatgcatattttgatacttaaacgacaaattttctaaataaaatcttaaagaactggctttgcccacaaaattaaagtatctctt |
43152941 |
T |
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| Q |
337 |
ccccagaaccacaagtatatgagccactaggaggcacgaatcatttccattgcaattccacgtaaactagtagttggggatggtgatggttaaagaatat |
436 |
Q |
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| T |
43152940 |
cccgagaaccacaagtatatgagccactaggaggcacgaatcatttccattgcaattccacgtaaactagtagttggggatggtgatggttaaagaatat |
43152841 |
T |
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| Q |
437 |
tagtgtctcttat |
449 |
Q |
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| T |
43152840 |
tagtgtctcttat |
43152828 |
T |
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