View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15439_low_11 (Length: 458)
Name: NF15439_low_11
Description: NF15439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15439_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 17 - 424
Target Start/End: Complemental strand, 36515913 - 36515505
Alignment:
| Q |
17 |
agggagaacgtaacaaagttgttattgaagttgtattagattgttagacgtgtatatggagttggtcatcctcatcttgtgagctaactttagtgagatt |
116 |
Q |
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| T |
36515913 |
agggagaacgtaacaaagttgttattgaagttgtattagattgttagacgtgtatatggagttggtcatcctcatcttgtgagctaactttagtgagatt |
36515814 |
T |
|
| Q |
117 |
caaattcatttaacatagtaattgagcagtgtaaaatatgataatgtgagaatttaacccaagtttcacgtgagtattaaaaatagtttcttagcatgga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36515813 |
caaattcatttaacatagtaattgagcagtgtaaaatatgataatgtgagaatttaacccaagtttcacgtgagtattaaaaatagtttcttagcatgga |
36515714 |
T |
|
| Q |
217 |
atgcgcccatttaacatttgtgttctcacattcacaccttcatcttctgagctaatttttgagatgaaattggagcctatttaatatgctatcataccca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36515713 |
atgcgcccatttaacatttgtgttctcacattcacaccttcatcttctgagctaatttttgagatgaaattggagcctatttaatatgctatcataccca |
36515614 |
T |
|
| Q |
317 |
-attaagaatttcatatattaaaggtgagggttgatattgatgttgtggaaattggatgtacatatgtggttgagatcaaaccgtatttaagagttttaa |
415 |
Q |
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| T |
36515613 |
gattaagaatttcatatattaaaggtgagggttgatattgatgttgtggaaattggatgtacatatgtggttgagatcaaaccgtatttaagagttttaa |
36515514 |
T |
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| Q |
416 |
cctcttaca |
424 |
Q |
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||||||||| |
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| T |
36515513 |
cctcttaca |
36515505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 52 - 255
Target Start/End: Original strand, 36805377 - 36805593
Alignment:
| Q |
52 |
ttagattgttagacgtgtatatggagttggtcatcctcatcttgtgagctaactttagtgagattcaaattcatttaacatagtaattgagcagtgtaaa |
151 |
Q |
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|||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| | | | ||||| |
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| T |
36805377 |
ttagattgttagacatgtatatggagttgatcatcatcatcttgtgagctaactttaatgagattcaaattcatttaacatagtaatttaacggcgtaaa |
36805476 |
T |
|
| Q |
152 |
atatgataatgtgagaatttaacccaagtttcac-------------gtgagtattaaaaatagtttcttagcatggaatgcgcccatttaacatttgtg |
238 |
Q |
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| T |
36805477 |
gtatgataatgtgagaatttaactcaagtttcacgtgagacatgaaagtgagtattaaaaatagtttcttagcatggaatgcgcccatttaacatttgtg |
36805576 |
T |
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| Q |
239 |
ttctcacattcacacct |
255 |
Q |
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| T |
36805577 |
ttctcacattcacacct |
36805593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 378 - 424
Target Start/End: Original strand, 36805675 - 36805721
Alignment:
| Q |
378 |
atatgtggttgagatcaaaccgtatttaagagttttaacctcttaca |
424 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
36805675 |
atatgtggttgagatcaaaccatatttaagagttttaatctcttaca |
36805721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 304
Target Start/End: Original strand, 36805625 - 36805679
Alignment:
| Q |
250 |
acaccttcatcttctgagctaatttttgagatgaaattggagcctatttaatatg |
304 |
Q |
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||||||||||||| |||||||| ||||| |||||||||| ||| ||||||||||| |
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| T |
36805625 |
acaccttcatcttttgagctaaattttgggatgaaattgaagcttatttaatatg |
36805679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 142
Target Start/End: Original strand, 36809613 - 36809695
Alignment:
| Q |
60 |
ttagacgtgtatatggagttggtcatcctcatcttgtgagctaactttagtgagattcaaattcatttaacatagtaattgag |
142 |
Q |
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||||| ||||||||| ||||||||||| ||||| | ||||||||||||| || ||||||||| ||| || |||||| ||||| |
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| T |
36809613 |
ttagatgtgtatatgtagttggtcatcttcatcgtatgagctaactttaatggaattcaaatttattaaatatagtatttgag |
36809695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 36805321 - 36805357
Alignment:
| Q |
20 |
gagaacgtaacaaagttgttattgaagttgtattaga |
56 |
Q |
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|||||| |||||||||||||||| ||||||||||||| |
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| T |
36805321 |
gagaacataacaaagttgttattcaagttgtattaga |
36805357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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