View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15439_low_13 (Length: 409)
Name: NF15439_low_13
Description: NF15439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15439_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 12080412 - 12080149
Alignment:
| Q |
1 |
catcatattatttccgtattctaattataatttattatctgtaacagtttgttgcagcttcattttgacctatttctattccttgatcatgattttactt |
100 |
Q |
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| T |
12080412 |
catcatattacttccgtattctaattataatttattatctgtaacagtttgttgcagcttcattttgacctattgctattccttga-------------- |
12080327 |
T |
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| Q |
101 |
tattgccatcatctacaatgtcctttctttggtggatcatcggtgatatcttctatttttctatcgagtgtgatttctttgattaaaaagcgaggcatta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12080326 |
--------tcatctacaatgtcctttctttggtggatcatcggtgatatcttctatttttctatcaagtgtgatttctttgattaaaaagcgaggcatta |
12080235 |
T |
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| Q |
201 |
aaccagcatcaactcctaagtcagaagttgagaagaatggctccataaaaatggtaatcagaatttcactttagattttatgttta |
286 |
Q |
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| T |
12080234 |
aaccagcatcaactcctaagtcagaagttgagaagaatggctccacaaaaatggtattcagaatttcactttagattttatgttta |
12080149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 60 - 391
Target Start/End: Complemental strand, 12072475 - 12072135
Alignment:
| Q |
60 |
tcattttgacctatttctattccttgatcatgattttactttattgccatcatctacaatgtcctttctttggtggatcatcggtgatatc-ttctattt |
158 |
Q |
| |
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|||||||| ||| || || ||||||||||||||||||| |||| || | ||||| || |||||||||||||| || |||| | ||| ||| |||||||| |
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| T |
12072475 |
tcattttgccctgttgctcttccttgatcatgattttaatttactgtcgtcatcaacgatgtcctttctttgccggttcattgttgacatcgttctattt |
12072376 |
T |
|
| Q |
159 |
ttctat--------cgagtgtgatttctttgattaaaaagcgaggcattaaaccagcatcaactcctaagtcagaagttgagaagaatggctccataaaa |
250 |
Q |
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| T |
12072375 |
ttctatgtcaatatcgactgtgatttctttgattaaaaagcgagaaatttgaccaggattggctcctaagtcagaagttgagaaggatggctccacaaaa |
12072276 |
T |
|
| Q |
251 |
atggtaatcagaatttcactttagattttatgtttagggttaattcatcaaattctagtaatgacatccacgacttcgatttttatggatttatctatac |
350 |
Q |
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|||||| ||| |||| ||||||||||||| ||||||| ||| ||||||||| ||||||||||| ||| || |||||| || ||| | |||| ||||| || |
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| T |
12072275 |
atggtactcaaaattccactttagattttgtgtttagcgtttattcatcaacttctagtaatggcattcaagacttcaatattttttgattcatctacac |
12072176 |
T |
|
| Q |
351 |
aactatcttttacatggttactgattcatctatacacttat |
391 |
Q |
| |
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| T |
12072175 |
aactatcttttacatggttactgattcatctatacaattat |
12072135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 276 - 391
Target Start/End: Complemental strand, 12080121 - 12080006
Alignment:
| Q |
276 |
ttttatgtttagggttaattcatcaaattctagtaatgacatccacgacttcgatttttatggatttatctatacaactatcttttacatggttactgat |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
12080121 |
ttttatgtttagggttaattcatcaaattctagtaatgacatccacgacttcgatttttatggatttatctatataactatcttttacatggttactgat |
12080022 |
T |
|
| Q |
376 |
tcatctatacacttat |
391 |
Q |
| |
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||||||||||| |||| |
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| T |
12080021 |
tcatctatacaattat |
12080006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 127
Target Start/End: Complemental strand, 12890534 - 12890413
Alignment:
| Q |
6 |
tattatttccgtattctaattataatttattatctgtaacagtttgttgcagcttcattttgacctatttctattccttgatcatgattttactttattg |
105 |
Q |
| |
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||||||||| || |||| ||| |||||||||| | | |||| ||||||||| |||||| |||||| | ||||||||||||||||| |||| ||||||| |
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| T |
12890534 |
tattatttctgtgttcttattttaatttattaccgggaacaacttgttgcaggttcattgtgacctgatgctattccttgatcatgagtttaatttattg |
12890435 |
T |
|
| Q |
106 |
ccatcatctacaatgtcctttc |
127 |
Q |
| |
|
|| || ||||| |||||||||| |
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| T |
12890434 |
ccgtcgtctactatgtcctttc |
12890413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 189
Target Start/End: Complemental strand, 14631790 - 14631599
Alignment:
| Q |
6 |
tattatttccgtattctaattataatttattatctgtaacagtttgttgcagcttcattttgacctatttctattccttgatcatgattttactttattg |
105 |
Q |
| |
|
||||| |||||| |||| ||| |||||| || |||| |||| ||||||||| |||||| |||||| | || |||||| |||||||||||| ||| ||| |
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| T |
14631790 |
tattacttccgtgttcttattttaatttttt-tctggaacaacttgttgcaggttcattgtgacctgatgctcttccttcatcatgattttaatttcttg |
14631692 |
T |
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| Q |
106 |
ccatcatctacaatgtcctttctttggtggatcatcggtgatatc-ttctatttttctat--------cgagtgtgatttctttgattaaaaa |
189 |
Q |
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| T |
14631691 |
gcgtcacctactatgtcctttctttggtggtttattggtgaaatcgttcaatttttatattttgtcaacgagtgtgatttctttgattaaaaa |
14631599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 267 - 317
Target Start/End: Complemental strand, 14651249 - 14651199
Alignment:
| Q |
267 |
cactttagattttatgtttagggttaattcatcaaattctagtaatgacat |
317 |
Q |
| |
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| T |
14651249 |
cactttagattttatgtttagggctaattcatttaattctagtaatgacat |
14651199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 237 - 317
Target Start/End: Complemental strand, 14646626 - 14646546
Alignment:
| Q |
237 |
atggctccataaaaatggtaatcagaatttcactttagattttatgtttagggttaattcatcaaattctagtaatgacat |
317 |
Q |
| |
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|||| |||| |||| ||||| |||||| |||||||||||||||| |||||||| | |||||| ||||||| ||||||||| |
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| T |
14646626 |
atggatccacaaaattggtactcagaaattcactttagattttacgtttagggctcattcattgaattctaataatgacat |
14646546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 304
Target Start/End: Complemental strand, 12062621 - 12062534
Alignment:
| Q |
217 |
taagtcagaagttgagaagaatggctccataaaaatggtaatcagaatttcactttagattttatgtttagggttaattcatcaaatt |
304 |
Q |
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| T |
12062621 |
taagtcagaagttcaaaaggatggctccatgaaaatggaactaaaaaatttaatttagattttatgtttagggtgaaatcatcaaatt |
12062534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 15989572 - 15989501
Alignment:
| Q |
217 |
taagtcagaagttgagaagaatggctccataaaaatggtaatcagaatttcactttagattttatgtttagg |
288 |
Q |
| |
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||||||||||||| | ||| |||||||||||||||||| | ||| || || | |||||||||| |||||||| |
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| T |
15989572 |
taagtcagaagttcaaaaggatggctccataaaaatggaactcaaaagtttaatttagattttttgtttagg |
15989501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 298
Target Start/End: Complemental strand, 12070315 - 12070287
Alignment:
| Q |
270 |
tttagattttatgtttagggttaattcat |
298 |
Q |
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| T |
12070315 |
tttagattttatgtttagggttaattcat |
12070287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 145
Target Start/End: Original strand, 14664658 - 14664800
Alignment:
| Q |
6 |
tattatttccgtattctaattataat---ttattatctgtaacagtttgttgcagcttcattttgacctatttctattccttgatcatgattttacttta |
102 |
Q |
| |
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|||||||||||| |||||||| |||| ||||||| |||| ||| ||||||| |||| ||| |||||| | || ||||| || |||||||| ||| |
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| T |
14664658 |
tattatttccgtgttctaattttaatttcttattatatgtaccagcttgttgctgcttaattgtgacctgatgatagtccttcttcgtgattttaatttc |
14664757 |
T |
|
| Q |
103 |
ttgccatcatctacaatgtcctttctttggtggatcatcggtg |
145 |
Q |
| |
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||| ||||| ||| |||||||||| ||||||| |||| |||| |
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| T |
14664758 |
ttgttatcatgtacgatgtcctttcgttggtggttcattggtg |
14664800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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