View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15439_low_14 (Length: 405)
Name: NF15439_low_14
Description: NF15439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15439_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 4e-91; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 212 - 389
Target Start/End: Complemental strand, 6453018 - 6452841
Alignment:
| Q |
212 |
tttcggatggtgttatatgattggttgtataccacctgcttgaaataagagagactacaattttatcccaatatttgtcatgatttatttatttatattt |
311 |
Q |
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| T |
6453018 |
tttcggatggtgttatatgattggttgtataccacctgcttgaaataagagagactacaattttatcccaatatttgtcctgatttatttatttatattt |
6452919 |
T |
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| Q |
312 |
aaatcataagaattttcaaggtaatatacacgcacacacttggagtattatcatatgacaaaaaagcctcttgtgcct |
389 |
Q |
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| T |
6452918 |
aaatcataagaattttcaaggtaatatacacgcacacacttggagtatcatcatatgacaaaaaagcctcttgtgcct |
6452841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 6453215 - 6453105
Alignment:
| Q |
17 |
atgaaggccgatgcacaagaggttgctgatgctgcaaagattacagttggtgctcacaaatgaatctatgtagcggggagctctcttaagtcttaa-tag |
115 |
Q |
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| T |
6453215 |
atgaaggcagatgcacaagaggttgctgatgctgcaaagattacagttggtgctcacaaatgaatctatgtagcggggagctctcttaagtcttaagtag |
6453116 |
T |
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| Q |
116 |
ctatttgcaac |
126 |
Q |
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| T |
6453115 |
ctatttgcaac |
6453105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 280 - 358
Target Start/End: Complemental strand, 6463662 - 6463584
Alignment:
| Q |
280 |
caatatttgtcatgatttatttatttatatttaaatcataagaattttcaaggtaatatacacgcacacacttggagta |
358 |
Q |
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| T |
6463662 |
caatatttatcatggtttatttatttttatttaaatcataagaattttcaaggtaatatatacgcacacacttggagta |
6463584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 212 - 287
Target Start/End: Complemental strand, 6463758 - 6463685
Alignment:
| Q |
212 |
tttcggatggtgttatatgattggttgtataccacctgcttgaaataagagagactacaattttatcccaatattt |
287 |
Q |
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| T |
6463758 |
tttcggatggtgttatatgattggttgtataccacctgcttgaaataa--gagacgacaattttatctcaatattt |
6463685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 6463923 - 6463846
Alignment:
| Q |
30 |
cacaagaggttgctgatgctgcaaagattacagttggtgctcacaaatgaatctatgtagcggggagctctcttaagt |
107 |
Q |
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| T |
6463923 |
cacaagaggctgctgatgctgtaaagagtacagatggtgctcacaaatgaatctatgtggtggggagctctcttaagt |
6463846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 44942308 - 44942228
Alignment:
| Q |
29 |
gcacaagaggttgctgatgctgcaaagattacagttggtgctcacaaatgaatctatgtagcggggagctctcttaagtct |
109 |
Q |
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| T |
44942308 |
gcacaagaggctgctgatgctgttaagaatagagttggtgctcaaaaatgaatctatatagtggagagctctcttaagtct |
44942228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 52951139 - 52951216
Alignment:
| Q |
29 |
gcacaagaggttgctgatgctgcaaagattacagttggtgctcacaaatgaatctatgtagcggggagctctcttaag |
106 |
Q |
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| T |
52951139 |
gcacgagaggttgctgacgcagtaaaaagtacagatggtgctcacaaatgaatctatgaagcggagagttctcttaag |
52951216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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