View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15439_low_15 (Length: 403)
Name: NF15439_low_15
Description: NF15439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15439_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 445353 - 445739
Alignment:
| Q |
1 |
gtttgtggttgttggtctattttcgcttaaccgttgaacgcgaaagggatccggcttgtgtgtataatcacaagtcggcgactgcatgcagccaacaagc |
100 |
Q |
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| T |
445353 |
gtttgtggttgttggtctattttcgcttaaccgttgaaagcgaaagggatccggcttgtgtgtataatcacaagtcggtgactgcatgcagccaacaagc |
445452 |
T |
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| Q |
101 |
taattgaagcatccgatcaatattgaatgatctaaatttcaactttagaattttatattcagcagcnnnnnnnnnnnnnnnntattgctttaaaatttga |
200 |
Q |
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| T |
445453 |
taattgaagcatccgatcaatattgaatgatctaaatttcaactttagaattttatattcagcagcaaaataaaaataaaaatattactttaaaatttga |
445552 |
T |
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| Q |
201 |
atcgtctgatattgatcggatagatcccttatgcagagtgttgctccaaatccaacttctaacgattgtgtggcaaaaatttgacagcttataaaacaca |
300 |
Q |
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|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||| |
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| T |
445553 |
atcgtctgatattgatcggatatatcccttgtgcagagtgttgctccaaatccaacttcccacgcctgtgtggcaaaaatttgacagcttattaaacaca |
445652 |
T |
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| Q |
301 |
ttagcgtgaggaggggcaagtacattgcaaagatgagaggtttagacatagaatactacatgccagtattggttatgttgttgatac |
387 |
Q |
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|||| |||| || || | ||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
445653 |
ttagggtgatgatggcataatacatagcaaggatgagaggtttagacatagaatactacatgccggtattggttatgttgttgatac |
445739 |
T |
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