View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15439_low_17 (Length: 366)
Name: NF15439_low_17
Description: NF15439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15439_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 8 - 349
Target Start/End: Original strand, 35829932 - 35830268
Alignment:
| Q |
8 |
gaacacagaccgtgagttaggctgaagcatggccctacaaacctacaagtggtgcctattaaattgactaactagctcaagtataccaagtatgaataaa |
107 |
Q |
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| T |
35829932 |
gaacacaaaccgtgagttaggctgaagcatggccctacaaacctacaagtggtgcctattaaattgactaactagctagagtataccaagtatgaataaa |
35830031 |
T |
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| Q |
108 |
ctctaataaagaaacctttacttacattgtttgtattcaatttgaatttgaatttgaattgaactttgtttaaacctatgatctcatg-nnnnnnnnnnn |
206 |
Q |
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| T |
35830032 |
ctctaataaagaaacctttacttacattgtttgtattc------aatttgaatttgaattgaactttgtttaaacctatgatctcatgaaaaacaaaaaa |
35830125 |
T |
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| Q |
207 |
nnnttaagttccagttgacttgttagaaaatgcacaccttggtgtgtaacattatgtaagttctagcacaaatttcccatttctggagtatttgacactt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35830126 |
aaattaagttccagttgacttgttagaaaatgcacaccttggtgtgtaacattatgtaagtgctagcacaaatttcccatttctggagtatttgacactt |
35830225 |
T |
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| Q |
307 |
tatgatgatgcaatatgcaggcctgggttggactagaataagt |
349 |
Q |
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| T |
35830226 |
tatgatgatgcaatatgcaggcctgggttggactagaataagt |
35830268 |
T |
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