View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15439_low_18 (Length: 358)
Name: NF15439_low_18
Description: NF15439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15439_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 3927956 - 3927635
Alignment:
| Q |
1 |
tgtatttaaattaaatgaggatgatgatgacaacaacaagggtggcaataaatatggttatcggccattttattttccaccatgacaatgagaggtgaac |
100 |
Q |
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| T |
3927956 |
tgtatttaaattaaatgaggatgatgatgacaacaacaagggtggcaataaatatggttatcgggcattttattttccaccatgacaatgagaggtgaac |
3927857 |
T |
|
| Q |
101 |
aagtctccttatcatcttcatggttcataaggtccaatgattgtacatcgattattatatatactcacgttcataaattgactattgataattaaggcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3927856 |
aagtctccttatcatcttcatggttcataaggtccaatgattgtccatcgattattatatatactcacgttcataaattgactattgataattaaggcca |
3927757 |
T |
|
| Q |
201 |
gttccnnnnnnnnncttttcatcctctatgagtgaatggtgaggccaacaataaaatataatgattgttagaatcattgcctcatttctatgccatttct |
300 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3927756 |
gttccttttttt---ttttcatcctctatgagtgaatggtgaggccaacaataaaatataatgattgttagaatca-------------atgccatttct |
3927673 |
T |
|
| Q |
301 |
tgtaatcgtttaacaaagccacgattattcctttcaaa |
338 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||| |
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| T |
3927672 |
tgtaattgtttaacaaagccacgattattcctttcaaa |
3927635 |
T |
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