View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15439_low_2 (Length: 975)

Name: NF15439_low_2
Description: NF15439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15439_low_2
NF15439_low_2
[»] chr8 (4 HSPs)
chr8 (23-417)||(29136253-29136644)
chr8 (561-961)||(29136764-29137164)
chr8 (682-855)||(28609937-28610110)
chr8 (662-751)||(30044590-30044678)
[»] chr2 (7 HSPs)
chr2 (682-761)||(33577151-33577230)
chr2 (641-724)||(4504591-4504674)
chr2 (660-853)||(36292567-36292759)
chr2 (567-619)||(3970760-3970812)
chr2 (666-734)||(37557279-37557347)
chr2 (660-702)||(37539173-37539215)
chr2 (796-841)||(3970760-3970805)
[»] chr4 (3 HSPs)
chr4 (660-750)||(13311683-13311773)
chr4 (660-741)||(12908485-12908566)
chr4 (676-750)||(13309788-13309863)
[»] chr6 (1 HSPs)
chr6 (641-768)||(27891329-27891457)
[»] chr5 (4 HSPs)
chr5 (708-780)||(30526022-30526094)
chr5 (708-780)||(30566362-30566434)
chr5 (567-606)||(30526176-30526215)
chr5 (567-606)||(30566516-30566555)
[»] chr7 (2 HSPs)
chr7 (641-750)||(5008556-5008665)
chr7 (644-761)||(48493255-48493372)
[»] chr3 (2 HSPs)
chr3 (567-622)||(7926520-7926575)
chr3 (561-632)||(7926714-7926784)
[»] chr1 (2 HSPs)
chr1 (660-746)||(15407262-15407348)
chr1 (643-749)||(43111511-43111617)


Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 23 - 417
Target Start/End: Original strand, 29136253 - 29136644
Alignment:
Q  23 gtctaagtaaagcacaagttagcaacatcgtgtggtcgatccaagtggtaagagactcgggcaccttaagtaggtggtcagtagtacaatctctgactgt 122  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  29136253 gtctaagtaaagcacaagttagcaacatcgtgtg-tcgatccaagtggtaagagactcgagcaccttaagtaggtggtcagtagttcaatctctgactgt 29136351  T
Q  123 gtatggaaaaatctcaattgggagggagaacttaccttgtgtgtccaacaagtttcccagaggagattagtcacaatcaaactcagttgaatactttgta 222  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29136352 --atggaaaaatctcaattgggagggagaacttaccttgtgtgtccaacaagtttcccagaggagattagtcacaatcaaactcagttgaatactttgta 29136449  T
Q  223 cgtatgatatggctataaattcactgcatgttttctcagggtagtattgtactgagtctatttatttgtgtttctttattctaattatctgactcaattg 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29136450 cgtatgatatggctataaattcactgcatgttttctcagggtagtattgtattgagtctatttatttgtgtttctttattctaattatctgactcaattg 29136549  T
Q  323 aatttcaagttttagtattattgatctcatataacttcaccttaaagcattgatggtaattatacactgcatgttcttttatgctggttctcaat 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29136550 aatttcaagttttagtattattgatctcatataacttcaccttaaagcattgatggcaattatacactgcatgttcttttatgctggttctcaat 29136644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 561 - 961
Target Start/End: Original strand, 29136764 - 29137164
Alignment:
Q  561 ttaaacggttaacacaattcaaataagtggttaattacgttcagtatatggctaatgaatattacaggtgtcaaattttgttaaccacaaatttatacat 660  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |    
T  29136764 ttaaacggttaacacaattcaaataagtggttaattacgttcagtatatggctaatgaatattacaggtgtcaaatttttttaaccacaaatttatatgt 29136863  T
Q  661 gattaaccacaattttaaggcgttcaaatctacatgtagttgaacatctgataattatggttaaccacatccaaattcgtgtttaatgaagttacattgg 760  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29136864 gattaaccacaatttgaaggtgttcaaatctacatgtagttgaacatctgaaaattatggttaaccacatccaaattcgtgtttaatgaagttacattgg 29136963  T
Q  761 ttgttaataagttttgacacttcgtgtatcaatttaccatatacagaacataattaataatatatttgaactgtgttaaccacttaaaaagttgtaaccg 860  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  29136964 ttgttaataagtttttacacttcgtgtatcaatttaccatatacagaacataatcaataatatatttgaactgcgttaaccacttaaaaagttgtaaccg 29137063  T
Q  861 aagtagtcaaattttagttgttaaataacactactcttttatattttacccccgttttcgattgggacagaattaggattataggatttagcttctctgt 960  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29137064 aagtagtcaaattttagttgttaaataacactgctgttttatattttacccccgttttcgattgggacagaattaggattataggatttagcttctctgt 29137163  T
Q  961 g 961  Q
    |    
T  29137164 g 29137164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 682 - 855
Target Start/End: Original strand, 28609937 - 28610110
Alignment:
Q  682 gttcaaatctacatgtagttgaacatctgataattatggttaaccacatccaaattcgtgtttaatgaagttacattggttgttaataagttttgacact 781  Q
    ||||||||||||||| ||||||||| || |  ||||||||||||| |||||| ||| ||| |||||||||| ||||| || |||||| | ||| ||||      
T  28609937 gttcaaatctacatgcagttgaacacctaaatattatggttaaccccatccatatttgtgattaatgaagtaacattagtggttaatgactttagacata 28610036  T
Q  782 tcgtgtatcaatttaccatatacagaacataattaataatatatttgaactgtgttaaccacttaaaaagttgt 855  Q
    |||| |||| ||| || || |||  |||||||||||  |  |||||||||||  ||||||||||||||||||||    
T  28610037 tcgtatatccattgactatctactaaacataattaaccacctatttgaactgacttaaccacttaaaaagttgt 28610110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 662 - 751
Target Start/End: Complemental strand, 30044678 - 30044590
Alignment:
Q  662 attaaccacaattttaaggcgttcaaatctacatgtagttgaacatctgataattatggttaaccacatccaaattcgtgtttaatgaag 751  Q
    ||||||| ||||||| ||| |||||||||||||||||||||||||||| | |||||| ||||||| | ||| ||||| || |||||||||    
T  30044678 attaacctcaattttgaggtgttcaaatctacatgtagttgaacatct-aaaattatagttaaccccttcctaattcatggttaatgaag 30044590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 1e-22; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 682 - 761
Target Start/End: Complemental strand, 33577230 - 33577151
Alignment:
Q  682 gttcaaatctacatgtagttgaacatctgataattatggttaaccacatccaaattcgtgtttaatgaagttacattggt 761  Q
    ||||||||||||||| |||||||||||||| ||| |||||||||||||| |||||| ||| |||||||||||||||||||    
T  33577230 gttcaaatctacatggagttgaacatctgaaaataatggttaaccacattcaaatttgtggttaatgaagttacattggt 33577151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 641 - 724
Target Start/End: Original strand, 4504591 - 4504674
Alignment:
Q  641 ttaaccacaaatttatacatgattaaccacaattttaaggcgttcaaatctacatgtagttgaacatctgataattatggttaa 724  Q
    |||||||||||| || || || |||| ||||  ||||||| |||||||||||||||||||||||||| ||| ||||||||||||    
T  4504591 ttaaccacaaatgtaaacgtggttaatcacaggtttaaggagttcaaatctacatgtagttgaacatttgaaaattatggttaa 4504674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 660 - 853
Target Start/End: Complemental strand, 36292759 - 36292567
Alignment:
Q  660 tgattaaccacaattttaaggcgttcaaatctacatgtagttgaacatctgataattatggttaaccacatccaaattcgtgtttaatgaagttacattg 759  Q
    ||||||||||||||||| ||  ||| ||||||| ||||||||||||| || | ||| | ||||| |||  || ||||| ||| ||||||||||||| | |    
T  36292759 tgattaaccacaattttcagctgtttaaatctagatgtagttgaacaactaaaaatgacggttagccatgtcaaaatttgtggttaatgaagttacgtcg 36292660  T
Q  760 gttgttaataagttttgacacttcgtgtatcaatttaccatatacagaacataattaataatatatttgaactgtgttaaccacttaaaaagtt 853  Q
     | |||||| ||||||||||| | || |||| ||| ||||| ||| |||| |||||||  |  ||||||||  || |||| |||||||||||||    
T  36292659 atggttaatgagttttgacac-tagtatatccattaaccatctactgaacgtaattaactacctatttgaagggtattaatcacttaaaaagtt 36292567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 567 - 619
Target Start/End: Original strand, 3970760 - 3970812
Alignment:
Q  567 ggttaacacaattcaaataagtggttaattacgttcagtatatggctaatgaa 619  Q
    |||||||||| |||||||| || |||||||| ||||||||||||| |||||||    
T  3970760 ggttaacacagttcaaatatgtagttaattatgttcagtatatggttaatgaa 3970812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 666 - 734
Target Start/End: Original strand, 37557279 - 37557347
Alignment:
Q  666 accacaattttaaggcgttcaaatctacatgtagttgaacatctgataattatggttaaccacatccaa 734  Q
    ||||||||||| ||| | |||||| |||| ||||||||||| |||| ||||||||||||| || |||||    
T  37557279 accacaattttcaggtgatcaaatatacacgtagttgaacacctgaaaattatggttaacaacgtccaa 37557347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 660 - 702
Target Start/End: Complemental strand, 37539215 - 37539173
Alignment:
Q  660 tgattaaccacaattttaaggcgttcaaatctacatgtagttg 702  Q
    ||||||||||||||||| | | |||||||||||||||||||||    
T  37539215 tgattaaccacaattttcaagtgttcaaatctacatgtagttg 37539173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 796 - 841
Target Start/End: Complemental strand, 3970805 - 3970760
Alignment:
Q  796 accatatacagaacataattaataatatatttgaactgtgttaacc 841  Q
    ||||||||| ||||||||||||  | ||||||||||||||||||||    
T  3970805 accatatactgaacataattaactacatatttgaactgtgttaacc 3970760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 660 - 750
Target Start/End: Complemental strand, 13311773 - 13311683
Alignment:
Q  660 tgattaaccacaattttaaggcgttcaaatctacatgtagttgaacatctgataattatggttaaccacatccaaattcgtgtttaatgaa 750  Q
    ||||||| ||| ||||||||| |||||| |||| ||||||||||||| |||| |||||  ||||||||||||||| |||||| | ||||||    
T  13311773 tgattaaacactattttaaggtgttcaattctatatgtagttgaacacctgaaaattagagttaaccacatccaatttcgtggtaaatgaa 13311683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 660 - 741
Target Start/End: Original strand, 12908485 - 12908566
Alignment:
Q  660 tgattaaccacaattttaaggcgttcaaatctacatgtagttgaacatctgataattatggttaaccacatccaaattcgtg 741  Q
    ||||||| ||| ||||||||| |||||| |||||||||||||||||| |||| | |||| |||||||||||| |||| ||||    
T  12908485 tgattaaacactattttaaggtgttcaattctacatgtagttgaacacctgaaagttatagttaaccacatcaaaatccgtg 12908566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 676 - 750
Target Start/End: Complemental strand, 13309863 - 13309788
Alignment:
Q  676 taaggcgttcaaatctacatgtagttgaacatctgataattatggtt-aaccacatccaaattcgtgtttaatgaa 750  Q
    ||||| |||||| |||||||||||||||||| |||| |||||| ||| |||||||||||| |||||| | ||||||    
T  13309863 taaggggttcaattctacatgtagttgaacacctgaaaattatagttaaaccacatccaagttcgtggtaaatgaa 13309788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 641 - 768
Target Start/End: Original strand, 27891329 - 27891457
Alignment:
Q  641 ttaaccacaaatttatacatgattaaccacaattttaaggcgttcaaatctacatgtagttgaacatctg-ataattatggttaaccacatccaaattcg 739  Q
    ||||||||||| ||  || ||||||||| ||||||| ||| ||| |||||||||||||||||||||  || | ||||||||||| | || |||| |||||    
T  27891329 ttaaccacaaacttggacgtgattaaccccaattttgaggtgtttaaatctacatgtagttgaacacatgcaaaattatggttagctacgtccatattcg 27891428  T
Q  740 tgtttaatgaagttacattggttgttaat 768  Q
    |  ||||||||||||| || || ||||||    
T  27891429 ttgttaatgaagttacgttagtggttaat 27891457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 708 - 780
Target Start/End: Complemental strand, 30526094 - 30526022
Alignment:
Q  708 ctgataattatggttaaccacatccaaattcgtgtttaatgaagttacattggttgttaataagttttgacac 780  Q
    |||| |||||||| ||||||| |||||||| ||| || |||||||||  ||||| ||||||||||||||||||    
T  30526094 ctgaaaattatggctaaccacttccaaatttgtggttgatgaagttatgttggtggttaataagttttgacac 30526022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 708 - 780
Target Start/End: Complemental strand, 30566434 - 30566362
Alignment:
Q  708 ctgataattatggttaaccacatccaaattcgtgtttaatgaagttacattggttgttaataagttttgacac 780  Q
    |||| |||||||| ||||||| |||||||| ||| || |||||||||  ||||| ||||||||||||||||||    
T  30566434 ctgaaaattatggctaaccacttccaaatttgtggttgatgaagttatgttggtggttaataagttttgacac 30566362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 606
Target Start/End: Complemental strand, 30526215 - 30526176
Alignment:
Q  567 ggttaacacaattcaaataagtggttaattacgttcagta 606  Q
    |||||||||| ||||||||||||||||||| |||||||||    
T  30526215 ggttaacacacttcaaataagtggttaattgcgttcagta 30526176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 606
Target Start/End: Complemental strand, 30566555 - 30566516
Alignment:
Q  567 ggttaacacaattcaaataagtggttaattacgttcagta 606  Q
    |||||||||| ||||||||||||||||||| |||||||||    
T  30566555 ggttaacacacttcaaataagtggttaattgcgttcagta 30566516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 641 - 750
Target Start/End: Original strand, 5008556 - 5008665
Alignment:
Q  641 ttaaccacaaatttatacatgattaaccacaattttaaggcgttcaaatctacatgtagttgaacatctgataattatggttaaccacatccaaattcgt 740  Q
    ||||||| ||||||  || |||| ||||||  |||| | | |||| ||||||||||||||| ||||||||| |||||||| |||| |  |||||||| ||    
T  5008556 ttaaccaaaaatttggacgtgatcaaccacttttttcacgtgttccaatctacatgtagtttaacatctgaaaattatggataactatgtccaaatttgt 5008655  T
Q  741 gtttaatgaa 750  Q
    | ||||||||    
T  5008656 ggttaatgaa 5008665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 644 - 761
Target Start/End: Complemental strand, 48493372 - 48493255
Alignment:
Q  644 accacaaatttatacatgattaaccacaattttaaggcgttcaaatctacatgtagttgaacatctgataattatggttaaccacatccaaattcgtgtt 743  Q
    |||||||||||  || ||||| ||||||| |||   | ||||||||||||||| | ||| |||  ||| ||||||| ||||| |||| | |||||||| |    
T  48493372 accacaaattttgacgtgatttaccacaactttcgcgtgttcaaatctacatgcaattggacacttgaaaattatgattaacgacattcgaattcgtgat 48493273  T
Q  744 taatgaagttacattggt 761  Q
    ||||||||||| ||||||    
T  48493272 taatgaagttatattggt 48493255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 622
Target Start/End: Original strand, 7926520 - 7926575
Alignment:
Q  567 ggttaacacaattcaaataagtggttaattacgttcagtatatggctaatgaatat 622  Q
    ||||||||||||||||||| ||||||| ||||||  |||| |||||||||| ||||    
T  7926520 ggttaacacaattcaaatatgtggttatttacgtatagtagatggctaatggatat 7926575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 561 - 632
Target Start/End: Complemental strand, 7926784 - 7926714
Alignment:
Q  561 ttaaacggttaacacaattcaaataagtggttaattacgttcagtatatggctaatgaatattacaggtgtc 632  Q
    ||||| ||||||||| ||| ||||| ||||||| |||||||||||| |||| |||||||||| | |||||||    
T  7926784 ttaaatggttaacacgatttaaatatgtggtta-ttacgttcagtaaatggttaatgaatataaaaggtgtc 7926714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 660 - 746
Target Start/End: Original strand, 15407262 - 15407348
Alignment:
Q  660 tgattaaccacaattttaaggcgttcaaatctacatgtagttgaacatctgataattatggttaaccacatccaaattcgtgtttaa 746  Q
    |||||||||| ||||||  || ||||||||||| ||  ||||||||   | | ||||||||||||||||||||||||| ||| ||||    
T  15407262 tgattaaccataattttctggtgttcaaatctagataaagttgaactcttaaaaattatggttaaccacatccaaatttgtgattaa 15407348  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 643 - 749
Target Start/End: Original strand, 43111511 - 43111617
Alignment:
Q  643 aaccacaaatttatacatgattaaccacaattttaaggcgttcaaatctacatgtagttgaacatctgataattatggttaaccacatccaaattcgtgt 742  Q
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T  43111511 aaccacaaatttgaatgtgattaactacaattttgaggtgtttgactctacatgtaggagaacacctgaaaattatggttaacgacgttcaaatttgtgg 43111610  T
Q  743 ttaatga 749  Q
    |||||||    
T  43111611 ttaatga 43111617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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