View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15439_low_20 (Length: 340)

Name: NF15439_low_20
Description: NF15439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15439_low_20
NF15439_low_20
[»] chr5 (13 HSPs)
chr5 (1-331)||(37428778-37429108)
chr5 (68-330)||(37413107-37413369)
chr5 (74-328)||(37639921-37640175)
chr5 (68-328)||(37400729-37400989)
chr5 (68-328)||(37711673-37711933)
chr5 (84-328)||(37594373-37594617)
chr5 (68-328)||(37392743-37393003)
chr5 (68-328)||(37435756-37436016)
chr5 (84-328)||(37702717-37702961)
chr5 (5-331)||(37382123-37382449)
chr5 (68-328)||(37823944-37824204)
chr5 (68-328)||(37533149-37533409)
chr5 (68-165)||(37696933-37697030)
[»] chr3 (1 HSPs)
chr3 (68-249)||(14553238-14553419)
[»] chr4 (1 HSPs)
chr4 (68-328)||(16842727-16842987)


Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 37429108 - 37428778
Alignment:
1 tctcaatgataactaactcacagggtcaattggtgagttctctactagttcattgaattatctattcctctcgaataacaagttacatggtccttttcca 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
37429108 tctcaatgataaccaactcacagggtcaattggtgagttctctactagttcattgaattatctattcctctcgaataacaagttacatggtccttttcca 37429009  T
101 aattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtagtagacttttacaatttttctaagtttaaattac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
37429008 aattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtagtagacttttacaatttttctaagtttaaattac 37428909  T
201 ttactttcctcgatctttcgcacaatagctttctttctatcaactttgacagtaatattgactccatctcacctagccttaatgcattatatttatcttc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
37428908 ttactttcctcgatctttcgcacaatagctttctttctatcaactttgacagtaatattgactccatctcacctagccttaatgcattatatttatcttc 37428809  T
301 tacaaatattaatagttttccaaaattctta 331  Q
    |||||||||||||||||||||||||||||||    
37428808 tacaaatattaatagttttccaaaattctta 37428778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 68 - 330
Target Start/End: Original strand, 37413107 - 37413369
Alignment:
68 ctctcgaataacaagttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtag 167  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||| |||||||||||| |||||||  || |  |    
37413107 ctctctaataacaagttacatggtcattttccaaattcaatatttaaattccaaaatcttacttacttaggtttgtcatcaacaaacttgaacggcgatg 37413206  T
168 tagacttttacaatttttctaagtttaaattacttactttcctcgatctttcgcacaatagctttctttctatcaactttgacagtaatattgactccat 267  Q
    | |||||| |  | ||||| || ||| ||  ||| |||||||| |||||||| | ||| |  ||||||||| ||||| |||  || | | ||||||||||    
37413207 tggactttcatcaattttcaaattttgaaaaactaactttccttgatctttcccgcaacaattttctttctgtcaacattggtagcagtgttgactccat 37413306  T
268 ctcacctagccttaatgcattatatttatcttctacaaatattaatagttttccaaaattctt 330  Q
    |||||| | |||| |  ||||||||||||||||||  ||||||||||||||||| || |||||    
37413307 ctcacccaaccttgaatcattatatttatcttctagtaatattaatagttttcctaatttctt 37413369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 74 - 328
Target Start/End: Complemental strand, 37640175 - 37639921
Alignment:
74 aataacaagttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtagtagact 173  Q
    ||||||||  |||| |||| ||||||||||||||||||| || ||||||||||||||||||||| |||||||||||| |||||||| ||||| || || |    
37640175 aataacaacctacaaggtcattttccaaattcaatatttcaactccaaaatcttacttacttagatttgtcatcaacaaacttgagtggtgttgtggatt 37640076  T
174 tttacaatttttctaagtttaaattacttactttcctcgatctttcgcacaatagctttctttctatcaactttgacagtaatattgactccatctcacc 273  Q
    || || | ||||| || || ||   ||| | || ||| |||||||| || ||||| ||||||||||||||| |||| || | |  ||||||||||| |||    
37640075 ttcaccaattttcaaaattaaacaaactaagttcccttgatctttcccataatagttttctttctatcaacattgatagcagtgctgactccatcttacc 37639976  T
274 tagccttaatgcattatatttatcttctacaaatattaatagttttccaaaattc 328  Q
     | |||| |  ||||||||||||||||| | |||||||| |||||||| ||||||    
37639975 caaccttgaatcattatatttatcttctgctaatattaaaagttttcccaaattc 37639921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 68 - 328
Target Start/End: Original strand, 37400729 - 37400989
Alignment:
68 ctctcgaataacaagttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtag 167  Q
    ||||| ||||||||  |||| |||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||| ||||| |    
37400729 ctctctaataacaacctacaaggtcattttccaaattcaatatttgaactccaaaatcttacttacttagatttgtcatcaacaaacttgagtggtgttg 37400828  T
168 tagacttttacaatttttctaagtttaaattacttactttcctcgatctttcgcacaatagctttctttctatcaactttgacagtaatattgactccat 267  Q
    | || ||| || | ||||| || || ||   |||    || ||| ||||||| || ||||| ||||||||||||||| |||| || | |  |||||||||    
37400829 tggattttcaccaattttcaaaattaaacaaactatggtttctccatctttcccataatagttttctttctatcaacattgatagcagtgctgactccat 37400928  T
268 ctcacctagccttaatgcattatatttatcttctacaaatattaatagttttccaaaattc 328  Q
    || ||| | ||||  |  |||| ||||||| ||| | ||||||||||||||||| ||||||    
37400929 cttacccaacctttttttattagatttatcctctgctaatattaatagttttcctaaattc 37400989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 68 - 328
Target Start/End: Complemental strand, 37711933 - 37711673
Alignment:
68 ctctcgaataacaagttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtag 167  Q
    ||||| ||||||||  |||| |||| ||||||||||||||||||| || ||||||||||||||||||||  |||||||||||| |||||||| ||||| |    
37711933 ctctctaataacaacctacaaggtcattttccaaattcaatatttcaactccaaaatcttacttacttatatttgtcatcaacaaacttgagtggtgttg 37711834  T
168 tagacttttacaatttttctaagtttaaattacttactttcctcgatctttcgcacaatagctttctttctatcaactttgacagtaatattgactccat 267  Q
    | || ||| || | ||||| || || ||   |||    |  |||| |||||| |||||||  ||||||||||||||| |||| || | ||||||||||||    
37711833 tggattttcaccaattttcaaaattaaacaaactatggtatctcgttctttcacacaatacttttctttctatcaacattgatagcagtattgactccat 37711734  T
268 ctcacctagccttaatgcattatatttatcttctacaaatattaatagttttccaaaattc 328  Q
    |  ||| | ||||  | ||||| ||||||| ||| | ||||||||||||||||| ||||||    
37711733 catacccaaccttttttcattagatttatcctctgctaatattaatagttttcctaaattc 37711673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 84 - 328
Target Start/End: Complemental strand, 37594617 - 37594373
Alignment:
84 tacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtagtagacttttacaattt 183  Q
    ||||||||| ||||||||||||||||||| || ||||||||||  |||||||| |||||||||||||||||||||| ||||| || || ||| || | ||    
37594617 tacatggtcattttccaaattcaatatttcaactccaaaatctatcttacttaactttgtcatcaaccaacttgagtggtgttgtcgattttcaccaatt 37594518  T
184 ttctaagtttaaattacttactttcctcgatctttcgcacaatagctttctttctatcaactttgacagtaatattgactccatctcacctagccttaat 283  Q
    ||| || || ||   |||    |  ||| ||||||| |||||||| |||||||||||||||||||| || | |  ||||||||||| ||| | ||||  |    
37594517 ttcaaaattaaacaaactagaatatctccatctttcacacaatagttttctttctatcaactttgatagcagtgctgactccatcttacccaaccttgtt 37594418  T
284 gcattatatttatcttctacaaatattaatagttttccaaaattc 328  Q
    |  |||  |||||||| | | ||||||||||||||||| ||||||    
37594417 gacttagttttatcttattctaatattaatagttttcctaaattc 37594373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 68 - 328
Target Start/End: Original strand, 37392743 - 37393003
Alignment:
68 ctctcgaataacaagttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtag 167  Q
    ||||| ||||||||  ||||||||| |||||||||||||||||||||| |||||||||||||  |||||| |||||| ||||| ||||| || ||||| |    
37392743 ctctcaaataacaacctacatggtcattttccaaattcaatatttgaactccaaaatcttaccaacttagatttgtcttcaacaaacttaagtggtgttg 37392842  T
168 tagacttttacaatttttctaagtttaaattacttactttcctcgatctttcgcacaatagctttctttctatcaactttgacagtaatattgactccat 267  Q
    | || ||| || | ||||| || || ||   |||    |  ||| ||||||| |||||| | ||||||||||||||| |||| || | | ||||| ||||    
37392843 tggattttcaccaattttcaaaattaaacagactatggtatctctatctttcacacaatggttttctttctatcaacattgatagcagtgttgacaccat 37392942  T
268 ctcacctagccttaatgcattatatttatcttctacaaatattaatagttttccaaaattc 328  Q
    || ||||| ||||  | ||||| ||||||| | | | ||||||||||||||||| ||||||    
37392943 cttacctaaccttttttcattagatttatcatatgccaatattaatagttttcctaaattc 37393003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 68 - 328
Target Start/End: Complemental strand, 37436016 - 37435756
Alignment:
68 ctctcgaataacaagttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtag 167  Q
    ||||| ||||||||  || | |||| |||| |||||||||||||| || |||||||||||||| | |||| |||||||||||| |||||||| ||||| |    
37436016 ctctcaaataacaacctagaaggtcatttttcaaattcaatatttcaactccaaaatcttactgaattagatttgtcatcaacaaacttgagtggtgttg 37435917  T
168 tagacttttacaatttttctaagtttaaattacttactttcctcgatctttcgcacaatagctttctttctatcaactttgacagtaatattgactccat 267  Q
    | || ||| || | ||||| ||  |||||   || | | ||||| |||||||||||||||| |||||||||||||||  | | || | |  |||||||||    
37435916 tggattttcaccaattttcaaaacttaaaaatctaattctcctcaatctttcgcacaatagttttctttctatcaacactaatagcagtgctgactccat 37435817  T
268 ctcacctagccttaatgcattatatttatcttctacaaatattaatagttttccaaaattc 328  Q
    || ||| | |||| |    ||| ||||||||||| | ||||||||||||||||| ||||||    
37435816 cttacccaaccttgagatgttagatttatcttctgctaatattaatagttttcctaaattc 37435756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 84 - 328
Target Start/End: Complemental strand, 37702961 - 37702717
Alignment:
84 tacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtagtagacttttacaattt 183  Q
    ||||||||| ||||||||||||||||| |||| |||||||||||||  |||||| |||||| ||||| |||||||| ||||| || || ||| || | ||    
37702961 tacatggtcattttccaaattcaatatatgaactccaaaatcttaccaacttagatttgtcgtcaacaaacttgagtggtgtcgtggattttcaccaatt 37702862  T
184 ttctaagtttaaattacttactttcctcgatctttcgcacaatagctttctttctatcaactttgacagtaatattgactccatctcacctagccttaat 283  Q
    ||| || || |||  ||| | || ||||  |||||| |||||||| ||| ||||||||||| |||| || | |  ||||||||||| ||| | ||||  |    
37702861 ttcaaaattaaaaaaactaaattccctcattctttcacacaatagttttatttctatcaacattgatagcagtgctgactccatcttacccaaccttgtt 37702762  T
284 gcattatatttatcttctacaaatattaatagttttccaaaattc 328  Q
    |  ||| |||| || ||| | ||||||||||||||||| ||||||    
37702761 gacttagatttctcgtctgctaatattaatagttttcctaaattc 37702717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 331
Target Start/End: Original strand, 37382123 - 37382449
Alignment:
5 aatgataactaactcacagggtcaattggtgagttctctactagttcattgaattatctattcctctcgaataacaagttacatggtccttttccaaatt 104  Q
    ||||| ||| |||| ||||| || |||||||| ||||| |||  ||| ||||  |||||||| ||||| ||||||||  || | |||  |||||||||||    
37382123 aatgacaaccaactaacaggttcgattggtgaattctcgacttattccttgatatatctatttctctctaataacaacataaaaggtgattttccaaatt 37382222  T
105 caatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtagtagacttttacaatttttctaagtttaaattacttac 204  Q
    |||||| | || | |||||||||  | ||||||  |||||||||||||||||||| ||||| || |||||| || | ||||| || | |||    ||       
37382223 caatatataaattacaaaatctttttgacttaggattgtcatcaaccaacttgagtggtgttgtggactttcaccaattttcaaattgtaagaagctatt 37382322  T
205 tttcctcgatctttcgcacaatagctttctttctatcaactttgacagtaatattgactccatctcacctagccttaatgcattatatttatcttctaca 304  Q
    |||||| |||||||| |||||||| || |||||||||||  |||| || |   |||||||||||| ||| | ||||     |||||||||||||||||      
37382323 tttccttgatctttcccacaatagtttgctttctatcaatattgaaagcagagttgactccatcttacccaaccttgggatattatatttatcttctagt 37382422  T
305 aatattaatagttttccaaaattctta 331  Q
    ||||||| ||||||||| |||||||||    
37382423 aatattagtagttttcctaaattctta 37382449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 68 - 328
Target Start/End: Complemental strand, 37824204 - 37823944
Alignment:
68 ctctcgaataacaagttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtag 167  Q
    ||||| ||||||||  |||  |||| ||||||||||||||||||| || |||||||||||||  | |||  |||||||||||| |||||||| ||||| |    
37824204 ctctctaataacaacctacgaggtcattttccaaattcaatatttcaactccaaaatcttaccgagttaattttgtcatcaacaaacttgagtggtgttg 37824105  T
168 tagacttttacaatttttctaagtttaaattacttactttcctcgatctttcgcacaatagctttctttctatcaactttgacagtaatattgactccat 267  Q
    | || ||| || | ||||| || || ||   ||| | || ||||| |||||| |||||||  |||||| ||||||||  ||| || | |  |||||||||    
37824104 tggattttcaccaattttcaaaattaaacaaactaaattccctcgttctttcacacaatacttttcttgctatcaacactgatagcagtgctgactccat 37824005  T
268 ctcacctagccttaatgcattatatttatcttctacaaatattaatagttttccaaaattc 328  Q
    || ||| | ||||  | ||||| ||||||| ||| | ||||||||||||||||| ||||||    
37824004 cttacccaaccttttttcattagatttatcctctgctaatattaatagttttcctaaattc 37823944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 328
Target Start/End: Complemental strand, 37533409 - 37533149
Alignment:
68 ctctcgaataacaagttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtag 167  Q
    ||||| ||||||||  |||| |||| ||||||||||||||||||| || |||||||||||||  |||||  ||||||||| || ||||| || ||||| |    
37533409 ctctctaataacaacctacaaggtcattttccaaattcaatatttcaactccaaaatcttaccgacttatatttgtcatccacaaacttaagtggtgttg 37533310  T
168 tagacttttacaatttttctaagtttaaattacttactttcctcgatctttcgcacaatagctttctttctatcaactttgacagtaatattgactccat 267  Q
    | || ||| || | ||||| || || ||   |||   || ||| |||||||| || ||||| ||||||||||||||| || | || ||| ||||||||||    
37533309 tggattttcaccaattttcaaaattaaacaaactaggttcccttgatctttcccataatagttttctttctatcaacattaatagcaatgttgactccat 37533210  T
268 ctcacctagccttaatgcattatatttatcttctacaaatattaatagttttccaaaattc 328  Q
    || ||| | ||||  ||  ||| | ||||||  | | ||||||||||||||||| ||||||    
37533209 cttacccaaccttgttgacttagaattatctaatgctaatattaatagttttcctaaattc 37533149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 68 - 165
Target Start/End: Complemental strand, 37697030 - 37696933
Alignment:
68 ctctcgaataacaagttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgt 165  Q
    ||||| ||||||||  |||| |||| ||||||||||||||||||| || ||||||| |||||  | |||  ||||||||||||||||||||| |||||    
37697030 ctctctaataacaacctacaaggtcattttccaaattcaatatttcaactccaaaaccttaccgagttatatttgtcatcaaccaacttgagtggtgt 37696933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 249
Target Start/End: Complemental strand, 14553419 - 14553238
Alignment:
68 ctctcgaataacaagttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtag 167  Q
    ||||| ||||||||  |||| |||| |||||||||||||||||||||| |||||||||||||  |||||  ||||||||| || |||||||| ||||| |    
14553419 ctctcaaataacaacctacaaggtcattttccaaattcaatatttgaactccaaaatcttaccgacttatatttgtcatccacaaacttgagtggtgttg 14553320  T
168 tagacttttacaatttttctaagtttaaattacttactttcctcgatctttcgcacaatagctttctttctatcaactttga 249  Q
    | || ||| || | ||||| || || |||  ||| | || |||||||||||| |||||||| ||| ||||||||||| ||||    
14553319 tggattttcaccaattttcaaaattaaaaaaactaaattccctcgatctttcacacaatagttttatttctatcaacattga 14553238  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 328
Target Start/End: Original strand, 16842727 - 16842987
Alignment:
68 ctctcgaataacaagttacatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtag 167  Q
    ||||| ||||||||  |||| || | |||||||||||||||||||||| |||||||||||||   | ||| ||| |||||||| |||||||| ||||| |    
16842727 ctctctaataacaacctacaaggccattttccaaattcaatatttgaactccaaaatcttaccgccctagatttatcatcaacaaacttgagtggtgttg 16842826  T
168 tagacttttacaatttttctaagtttaaattacttactttcctcgatctttcgcacaatagctttctttctatcaactttgacagtaatattgactccat 267  Q
    | || ||| || | ||||| || || ||   |||    |  ||||||||||| |||||||  |||||||||||||||  ||| || | |  |||||||||    
16842827 tggattttcaccaattttcaaaattaaacaaactagggtatctcgatctttcacacaatacttttctttctatcaacactgatagcattgctgactccat 16842926  T
268 ctcacctagccttaatgcattatatttatcttctacaaatattaatagttttccaaaattc 328  Q
    || ||| | ||||  | ||||| ||||||||| | | ||||||||||||||||| ||||||    
16842927 cttacccaaccttttttcattagatttatcttatgctaatattaatagttttcctaaattc 16842987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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