View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15439_low_21 (Length: 337)
Name: NF15439_low_21
Description: NF15439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15439_low_21 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 21 - 259
Target Start/End: Complemental strand, 27154967 - 27154729
Alignment:
| Q |
21 |
atagaacttcacccattaagaaggttgttcaagagcctctgcacaagtcaaggagacctacaaggaagttgaagttgtcttccgaagcttcagaagctgt |
120 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27154967 |
atagaacttcaccagttaagaaggttgttcaagagcctctgcacaagtcaaggagacctacaaggaagttgaagttgtcttccgaagcttcagaagctgt |
27154868 |
T |
|
| Q |
121 |
aacaagtgaaggtggaagatctatcgctcaatttgtggaagataagtatgtgaaagctgttaagaagatgttggagctatctaaggatttggagcagcca |
220 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||| |||| || || ||||||||||||||||||||| |
|
|
| T |
27154867 |
aacaagtgaaggtggaagatccatcgctcagtttgtggaagataagtatgtgaaagttgttaagaaggtgttcgacctgtctaaggatttggagcagcca |
27154768 |
T |
|
| Q |
221 |
acagtgagtcaagctagtgaggtcctgaagactcacatg |
259 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
27154767 |
acaatgggtcaagctagtgaggtcctgaagactcacatg |
27154729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 111 - 259
Target Start/End: Complemental strand, 27113084 - 27112936
Alignment:
| Q |
111 |
cagaagctgtaacaagtgaaggtggaagatctatcgctcaatttgtggaagataagtatgtgaaagctgttaagaagatgttggagctatctaaggattt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||| |||| || || ||||||||||| |
|
|
| T |
27113084 |
cagaagctgtaacaagtgaaggtggaagatccatcgctcagtttgtggaagataagtatgtgaaagttgttaagaaggtgttcgacctgtctaaggattt |
27112985 |
T |
|
| Q |
211 |
ggagcagccaacagtgagtcaagctagtgaggtcctgaagactcacatg |
259 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
27112984 |
ggagcagccaacaatgggtcaagctagtgaggtcctgaagactcacatg |
27112936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 230 - 289
Target Start/End: Complemental strand, 15554523 - 15554464
Alignment:
| Q |
230 |
caagctagtgaggtcctgaagactcacatgaaggttaaattggaacaaggtacttcagaa |
289 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15554523 |
caagctagtgaggtccttaagactcacatgaaggttaaattggaacaaggttattcagaa |
15554464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 230 - 280
Target Start/End: Complemental strand, 15650129 - 15650079
Alignment:
| Q |
230 |
caagctagtgaggtcctgaagactcacatgaaggttaaattggaacaaggt |
280 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15650129 |
caagctagtgaggtccttaagactcacatgaaggttaaattggaacaaggt |
15650079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University