View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15439_low_22 (Length: 324)
Name: NF15439_low_22
Description: NF15439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15439_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 56 - 299
Target Start/End: Complemental strand, 43069484 - 43069243
Alignment:
| Q |
56 |
agagtgaggagacactcatcgtgatcaatcatctacgtgtagaataagtaatataataattaagaagatttcatttcatcaaaaaatatgagcgattcaa |
155 |
Q |
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| T |
43069484 |
agagtgaggagacactcat---gatcaatcatctacgtgtagaataagtaatataataattaagaagatttcatttcatcaaaaaatatgagcgattcaa |
43069388 |
T |
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| Q |
156 |
aattttcctcaata-ttttgtgcatgaaatgaaacaaaaagctcttacaagattgaatttcaaaagnnnnnnngtacggcaaaggaagatctagaccctc |
254 |
Q |
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| T |
43069387 |
aattttcctcaatatttttgtgcatgaaatgaaacaaaaagctcttacaagattgaatttcaaaagtttttttgtacggcaaaggaagatctagaccctc |
43069288 |
T |
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| Q |
255 |
caaggaaactccctcttctagttattatacaagctcctcttgaag |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43069287 |
caaggaaactccctcttctagttattatacaagctcctcttgaag |
43069243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 54468655 - 54468714
Alignment:
| Q |
1 |
aagacccaatgtttcaaaatatgcagataatgacattcatgctgaggaaaagaagagagt |
60 |
Q |
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| T |
54468655 |
aagaccaaatgtttcaaaatatgaagataatgacattaatgctgaggaaaagaagagagt |
54468714 |
T |
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