View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15439_low_27 (Length: 247)
Name: NF15439_low_27
Description: NF15439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15439_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 27215368 - 27215160
Alignment:
| Q |
17 |
cataggggtgtgctgattttgcatcgactgttcagtttcatttaatttcgcacctccttttaaataatgaatttgcattttgcagtcaaacaagagaaag |
116 |
Q |
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| T |
27215368 |
cataggggtgtgctgattttgcatcgactgttcagtttcatttaatttcgcacctccttttaaataatgaatttgcattttgcagtcaaacaagagaaag |
27215269 |
T |
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| Q |
117 |
tccagttccaagacaagtagctcgagctcgatggcgaagaaggttgattttgatgatttggattcagtatcacctagacaagc---atcacccttgcaaa |
213 |
Q |
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| T |
27215268 |
tccagttccaagacaagtagc------tcgatggcgaagaaggttgattttgatgatttggattcagtatcacctagacaagctttgtcacccttgcaaa |
27215175 |
T |
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| Q |
214 |
gaaactctgtacatg |
228 |
Q |
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| T |
27215174 |
gtaactctgtacatg |
27215160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 27236971 - 27236763
Alignment:
| Q |
17 |
cataggggtgtgctgattttgcatcgactgttcagtttcatttaatttcgcacctccttttaaataatgaatttgcattttgcagtcaaacaagagaaag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27236971 |
cataggggtgtgctgattttgcatcgactgttcagtttcatttaatttcgcacctccttttaaataatgaatttgcattttgcagtcaaacaagagaaag |
27236872 |
T |
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| Q |
117 |
tccagttccaagacaagtagctcgagctcgatggcgaagaaggttgattttgatgatttggattcagtatcacctagacaagc---atcacccttgcaaa |
213 |
Q |
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| T |
27236871 |
tccagttccaagacaagtagc------tcgatggcgaagaaggttgattttgatgatttagattcagtgtcacctagacaagctttgtcacccttgcaaa |
27236778 |
T |
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| Q |
214 |
gaaactctgtacatg |
228 |
Q |
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| T |
27236777 |
gtaactctgtacatg |
27236763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 45658730 - 45658688
Alignment:
| Q |
95 |
tttgcagtcaaacaagagaaagtccagttccaagacaagtagc |
137 |
Q |
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| T |
45658730 |
tttgcagtcaaacaagagaaagtctagtcccaaaacaagtagc |
45658688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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