View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15439_low_3 (Length: 939)

Name: NF15439_low_3
Description: NF15439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15439_low_3
NF15439_low_3
[»] chr4 (5 HSPs)
chr4 (302-849)||(36606098-36606650)
chr4 (50-194)||(36605868-36606012)
chr4 (76-200)||(27105885-27106010)
chr4 (25-200)||(12630169-12630340)
chr4 (893-930)||(36606659-36606696)
[»] chr8 (1 HSPs)
chr8 (74-200)||(14199758-14199885)
[»] chr1 (3 HSPs)
chr1 (76-200)||(44678484-44678609)
chr1 (791-849)||(2713763-2713821)
chr1 (136-182)||(38858401-38858447)
[»] chr6 (3 HSPs)
chr6 (76-200)||(2483814-2483939)
chr6 (76-200)||(5364154-5364279)
chr6 (367-412)||(3370232-3370277)
[»] chr5 (2 HSPs)
chr5 (138-200)||(8315984-8316046)
chr5 (115-149)||(25980533-25980567)
[»] scaffold0009 (2 HSPs)
scaffold0009 (133-182)||(3967-4016)
scaffold0009 (133-182)||(4348-4397)
[»] chr7 (2 HSPs)
chr7 (134-191)||(46465640-46465697)
chr7 (135-182)||(21870552-21870599)
[»] chr2 (3 HSPs)
chr2 (135-191)||(10164387-10164443)
chr2 (136-182)||(11124794-11124840)
chr2 (359-413)||(45161391-45161445)


Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 302 - 849
Target Start/End: Original strand, 36606098 - 36606650
Alignment:
Q  302 aacaaaaaagtgttaagatattaaaggaatcaagtggattnnnnnnngttcacaaggaaaacaaagggttaatagtgttttacctgtgaaatatagagca 401  Q
    ||||||||| ||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||| | ||| |||||| ||||    
T  36606098 aacaaaaaattgttaagatattaaaggaatcaagtggattaaaaaaagttcacaaggaaaacaaagggttaatagtgttttatccgtgtaatataaagca 36606197  T
Q  402 tttttggttttgtcccttgtgatataaggttcattaaactttttcagaaaccgagtacacacattcattgtgttcatgttcttgtttcttcacaaactga 501  Q
    |||||||||||||||| ||  ||||| ||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||| |    
T  36606198 tttttggttttgtcccctgcaatatagggttcattaaactttttcacaaacccagtacacacattaattgtgttcatgttcttgtttcttcacaaactca 36606297  T
Q  502 aaccttcataccacaatcccaaaattcatgnnnnnnnntccaacagaattctttgacaaataatattat----aatcatcaacaacaacacaattgttta 597  Q
    ||||||||||||||||||||||||||||||        ||||||||| |||||||||||||||||||||    |||||||||||||||||||||||||||    
T  36606298 aaccttcataccacaatcccaaaattcatgaaaaaaaatccaacagagttctttgacaaataatattatttataatcatcaacaacaacacaattgttta 36606397  T
Q  598 acagttaattacaatccattaaaattcttcaaatctagaatcgacttacccactttatcttcatcttcccaaactggaaaa-aatcgtagaagaaaattt 696  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  36606398 acagttaattacaatccattaaaattcttcaaatctagaatcgacttacccaatttatcttcatcttcccaaactggaaaaaaatcgtagaagaaaattt 36606497  T
Q  697 atcaaacttagttccgactaactcagtaactcagcttcatgttcaaaaccaaccgtcggagctgacgaacaaaaaggtaacgacaactttggtttggctg 796  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  36606498 atcaaacttagttctgactcactcagtaactcagcttcatgttcaaaaccaaccgtcggagctgacgaacaaaaaggtaacgacaaccttggtttggttg 36606597  T
Q  797 ttgttgattctattgaacgtgcgaggtttaaaacagaaaagctaattaatcat 849  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36606598 ttgttgattctattgaacgtgcgaggtttaaaacagaaaagctaattaatcat 36606650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 50 - 194
Target Start/End: Original strand, 36605868 - 36606012
Alignment:
Q  50 taataggaatatgttggtgatataacctggagtggaatttccaagagttttgaaaatgaagctgatgatacaagcatggtatcctattttgttttgaaga 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36605868 taataggaatatgttggtgatataacctggagtggaatttccaagagttttgaaaatgaagctgacgatacaagcatggtatcctattttgttttgaaga 36605967  T
Q  150 ggatctaattacacatttgatgatttagtatttcatactttaatt 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  36605968 ggatctaattacacatttgatgatttagtatttcatactttaatt 36606012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 76 - 200
Target Start/End: Complemental strand, 27106010 - 27105885
Alignment:
Q  76 ctggagtggaatttccaagagttttgaaaatgaagctgatgatacaa-gcatggtatcctattttgttttgaagaggatctaattacacatttgatgatt 174  Q
    ||||||||||||||| |  ||||||||||| || | |||  |||||| |||||  |||||||||||||||||||||||| |||||||||||||||  |||    
T  27106010 ctggagtggaatttctacaagttttgaaaaggaggttgactatacaaagcatgaaatcctattttgttttgaagaggatttaattacacatttgaaaatt 27105911  T
Q  175 tagtatttcatactttaattagatat 200  Q
    | |||||| ||| ||||||| |||||    
T  27105910 ttgtatttgatattttaattggatat 27105885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 25 - 200
Target Start/End: Complemental strand, 12630340 - 12630169
Alignment:
Q  25 tatttgatcatattgtttgttcttctaataggaatatgttggtgatataacctggagtggaatttccaagagttttgaaaatgaagctgatgatacaa-g 123  Q
    |||||| | |||||| |||||||| |||||||||||||      |||  ||||||||||||||||| |  ||||||||||| || | |||  |||||| |    
T  12630340 tatttggttatattgattgttcttttaataggaatatgc-----ataccacctggagtggaatttctacaagttttgaaaaggaggttgactatacaaag 12630246  T
Q  124 catggtatcctattttgttttgaagaggatctaattacacatttgatgatttagtatttcatactttaattagatat 200  Q
    ||||| |||||||||| ||||||||||||| |||||||||||||||  |||| |||||| ||| |||| || |||||    
T  12630245 catggaatcctattttattttgaagaggatttaattacacatttgaaaattttgtattttatattttatttggatat 12630169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 893 - 930
Target Start/End: Original strand, 36606659 - 36606696
Alignment:
Q  893 ggttaatttgggtagtgttgttattatttctctctgtg 930  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36606659 ggttaatttgggtagtgttgttattatttctctctgtg 36606696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 74 - 200
Target Start/End: Original strand, 14199758 - 14199885
Alignment:
Q  74 acctggagtggaatttccaagagttttgaaaatgaagctgatgatacaa-gcatggtatcctattttgttttgaagaggatctaattacacatttgatga 172  Q
    ||||||||||||||||| |  ||||||||||| || | |||  |||||| |||||| |||||||||||||||||||||||| |||||||||||||||  |    
T  14199758 acctggagtggaatttctacaagttttgaaaaggaggttgactatacaaagcatggaatcctattttgttttgaagaggatttaattacacatttgaaaa 14199857  T
Q  173 tttagtatttcatactttaattagatat 200  Q
    |||||||||| ||| ||||||| |||||    
T  14199858 tttagtatttgatattttaattggatat 14199885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 2e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 76 - 200
Target Start/End: Complemental strand, 44678609 - 44678484
Alignment:
Q  76 ctggagtggaatttccaagagttttgaaaatgaagctgatgatacaa-gcatggtatcctattttgttttgaagaggatctaattacacatttgatgatt 174  Q
    ||||||||||||||| |  ||||||||||| || | |||  |||||| |||||| |||||||||||||||||||||||| |||||||||||||||  |||    
T  44678609 ctggagtggaatttctacaagttttgaaaaggaggttgactatacaaagcatggaatcctattttgttttgaagaggatttaattacacatttgaaaatt 44678510  T
Q  175 tagtatttcatactttaattagatat 200  Q
    | |||||| ||| ||||||| |||||    
T  44678509 ttgtatttgatattttaattggatat 44678484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 791 - 849
Target Start/End: Original strand, 2713763 - 2713821
Alignment:
Q  791 tggctgttgttgattctattgaacgtgcgaggtttaaaacagaaaagctaattaatcat 849  Q
    |||||||||||||||||||||||  ||||||||| ||||||| ||| ||||||||||||    
T  2713763 tggctgttgttgattctattgaaattgcgaggttgaaaacaggaaaactaattaatcat 2713821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 38858401 - 38858447
Alignment:
Q  136 ttttgttttgaagaggatctaattacacatttgatgatttagtattt 182  Q
    |||||||||||||||||| ||||||||||||| |||| || ||||||    
T  38858401 ttttgttttgaagaggatttaattacacatttaatgaatttgtattt 38858447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 4e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 76 - 200
Target Start/End: Original strand, 2483814 - 2483939
Alignment:
Q  76 ctggagtggaatttccaagagttttgaaaatgaagctgatgatacaa-gcatggtatcctattttgttttgaagaggatctaattacacatttgatgatt 174  Q
    ||||||||||||||| |  ||||||||||| || | |||  |||||| |||||  |||||||||||||||||||||||| |||||||||||||||  |||    
T  2483814 ctggagtggaatttctacaagttttgaaaaggaggttgactatacaaagcatgaaatcctattttgttttgaagaggatttaattacacatttgaaaatt 2483913  T
Q  175 tagtatttcatactttaattagatat 200  Q
    | |||||| ||| ||||||| |||||    
T  2483914 ttgtatttgatattttaattggatat 2483939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 200
Target Start/End: Complemental strand, 5364279 - 5364154
Alignment:
Q  76 ctggagtggaatttccaagagttttgaaaatgaagctgatgatacaa-gcatggtatcctattttgttttgaagaggatctaattacacatttgatgatt 174  Q
    ||||||||||||||| |  ||||||||||| || | |||  |||||| || ||  ||| ||||||||||||||||| || |||||||||||||||  |||    
T  5364279 ctggagtggaatttctacaagttttgaaaaggaggttgactatacaaagcctgaaatcgtattttgttttgaagagaatttaattacacatttgaaaatt 5364180  T
Q  175 tagtatttcatactttaattagatat 200  Q
    |  ||||| ||| ||||||| |||||    
T  5364179 ttatatttgatattttaattggatat 5364154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 367 - 412
Target Start/End: Complemental strand, 3370277 - 3370232
Alignment:
Q  367 gggttaatagtgttttacctgtgaaatatagagcatttttggtttt 412  Q
    ||||||| |||||||||||| || ||||||||||||||||| ||||    
T  3370277 gggttaacagtgttttacctttgtaatatagagcatttttgatttt 3370232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 8315984 - 8316046
Alignment:
Q  138 ttgttttgaagaggatctaattacacatttgatgatttagtatttcatactttaattagatat 200  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||| |||| || |||||    
T  8315984 ttgttttgaagaggatctaattacacatttaatgatttagtatttgatattttatttggatat 8316046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 25980533 - 25980567
Alignment:
Q  115 tgatacaagcatggtatcctattttgttttgaaga 149  Q
    |||||||||||||| ||||||||||||||||||||    
T  25980533 tgatacaagcatggaatcctattttgttttgaaga 25980567  T

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Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 4016 - 3967
Alignment:
Q  133 ctattttgttttgaagaggatctaattacacatttgatgatttagtattt 182  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  4016 ctattttgttttgaagaggatcatattacacatttaatgatttagtattt 3967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 4397 - 4348
Alignment:
Q  133 ctattttgttttgaagaggatctaattacacatttgatgatttagtattt 182  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  4397 ctattttgttttgaagaggatcatattacacatttaatgatttagtattt 4348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 46465640 - 46465697
Alignment:
Q  134 tattttgttttgaagaggatctaattacacatttgatgatttagtatttcatacttta 191  Q
    ||||||||||| |||||||| ||||||||||||| ||||||| |||||| ||| ||||    
T  46465640 tattttgttttaaagaggatttaattacacatttaatgattttgtatttgatatttta 46465697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 21870599 - 21870552
Alignment:
Q  135 attttgttttgaagaggatctaattacacatttgatgatttagtattt 182  Q
    ||||||||||||||||||| |||||||| |||| ||||||| ||||||    
T  21870599 attttgttttgaagaggatttaattacatatttaatgattttgtattt 21870552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 10164387 - 10164443
Alignment:
Q  135 attttgttttgaagaggatctaattacacatttgatgatttagtatttcatacttta 191  Q
    |||||||||||||||| || ||||||||||||| ||||||| |||||| ||| ||||    
T  10164387 attttgttttgaagagaatttaattacacatttaatgattttgtatttgatatttta 10164443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 11124840 - 11124794
Alignment:
Q  136 ttttgttttgaagaggatctaattacacatttgatgatttagtattt 182  Q
    ||||||||||||||| || ||||||||||||| ||||||| ||||||    
T  11124840 ttttgttttgaagagaatttaattacacatttaatgattttgtattt 11124794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 359 - 413
Target Start/End: Complemental strand, 45161445 - 45161391
Alignment:
Q  359 aaaacaaagggttaatagtgttttacctgtgaaatatagagcatttttggttttg 413  Q
    |||| ||||||||||||||||||||||  || ||||||| ||| |||||||||||    
T  45161445 aaaataaagggttaatagtgttttacccctgtaatatagggcacttttggttttg 45161391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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