View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15439_low_31 (Length: 206)
Name: NF15439_low_31
Description: NF15439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15439_low_31 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 47339246 - 47339074
Alignment:
| Q |
19 |
aaactgcttgagcagcttcttctgaaattccatcattcataagataaagctcctccaagcagctttgtgatttcaagagagttccaaatgctctaacacc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47339246 |
aaactgcttgagcagcttcttctgaaattccatcattcataagataaagctcctccaaacagctttgtgatttcaagagagttccaaatgctctaacacc |
47339147 |
T |
|
| Q |
119 |
tttctcacctaaagcattgtcagaaaggtttaaatacttcaagacactgccttctagagcagccgagaatatc |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
47339146 |
tttctcacctaaagcattgtcagaaaggtttaaatacttcaagacactgccttctagagtagccgagaatatc |
47339074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 32061758 - 32061701
Alignment:
| Q |
20 |
aactgcttgagcagcttcttctgaaattccatcattcataagataaagctcctccaag |
77 |
Q |
| |
|
|||||||| |||||||| ||||| || ||||||||||| | |||||||||||||||| |
|
|
| T |
32061758 |
aactgcttttgcagcttcctctgatataccatcattcatcaaataaagctcctccaag |
32061701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University