View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15439_low_4 (Length: 722)
Name: NF15439_low_4
Description: NF15439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15439_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 212 - 711
Target Start/End: Complemental strand, 4287137 - 4286642
Alignment:
| Q |
212 |
gctctgatatctattagttattgttgatttgaaatatgtcatgcatcttgatgctctaatgatcaaatctatcactctgacctggatgacataaattggt |
311 |
Q |
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| T |
4287137 |
gctctgatatctattagttagtgttgatttgaaatatgtcat----cttgatgctctaatgatcaaatctatcactctgaactggatgacataaattggt |
4287042 |
T |
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| Q |
312 |
ttgaactttgaatattagttagtgttgtttggatatgtttgctctaatgtttgtaactgaagcttcttaaaatatatatactttcttcatgctttcatca |
411 |
Q |
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| T |
4287041 |
ttgaacttcgaatattagttagtgtttcttggatatgtttgctctaaagtttgtaattgaagcttcttataatatatatactttcttcatgctttcatca |
4286942 |
T |
|
| Q |
412 |
atcatgttttaagaaaatgtgtttactagttctaatattgatagcgtgctttcattcctaagcataaaaagaaacattgattatcttgactaaataaaac |
511 |
Q |
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| T |
4286941 |
atcatgttttaagaaaatgtgtttactagttctaatattgatagcgtgctttcattcctaagcataaaaagaaacattgattatcttgactaaataaaac |
4286842 |
T |
|
| Q |
512 |
aatctaatcttgaatgaaaacctgtgtgttattattgtttcctcctctcaaaattctgttcatacattactggggagtagttaccaagtgctagtttatt |
611 |
Q |
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| T |
4286841 |
aatctaatcttgaatgaaaacctgtgtgttattattgtttcctcctctcaaaattctgttcatacattactggggagtagttgccaagtgctagtttatt |
4286742 |
T |
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| Q |
612 |
gcatgtagtcaaatttatgattttttgatgtttcgaattgacgtagaattcagtttgtttggatcaactccttctcaagtgctttggggtggactgatga |
711 |
Q |
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| T |
4286741 |
gcatgtagtcaaatttatgatttttttatgtttcaaattgacgtagaattcagtttgtttggatcaactccttctcaagtgctttggggtggactgatga |
4286642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 4287344 - 4287222
Alignment:
| Q |
19 |
aaaaggatcaccttttagcaactgcaagatagattgaaagtgtataaaatgatagattaaactgattac-aaattgcaattcatattaagggatgattcg |
117 |
Q |
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| T |
4287344 |
aaaaggatcaccttttagcaactgcaagatagattgaaagtgtataaaatgatagattaaactgattacaaaattgcaattcatattaagggatgattcg |
4287245 |
T |
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| Q |
118 |
aaattagtttctaagacagtaaa |
140 |
Q |
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| T |
4287244 |
aaattagtttcgaagacagtaaa |
4287222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 435 - 489
Target Start/End: Complemental strand, 19972224 - 19972170
Alignment:
| Q |
435 |
tactagttctaatattgatagcgtgctttcattcctaagcataaaaagaaacatt |
489 |
Q |
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| T |
19972224 |
tactagctctaatattgatagcatcacttcattcccaagcataaaaagaaacatt |
19972170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 388 - 449
Target Start/End: Complemental strand, 19972306 - 19972245
Alignment:
| Q |
388 |
tatactttcttcatgctttcatcaatcatgttttaagaaaatgtgtttactagttctaatat |
449 |
Q |
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|||| |||||||||||||| ||||| |||||||| |||||| | |||||||| |||||||| |
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| T |
19972306 |
tataatttcttcatgctttgatcaaccatgttttgagaaaacgcatttactagctctaatat |
19972245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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