View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15439_low_5 (Length: 638)

Name: NF15439_low_5
Description: NF15439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15439_low_5
NF15439_low_5
[»] chr4 (32 HSPs)
chr4 (15-340)||(5162689-5163015)
chr4 (17-340)||(5184521-5184838)
chr4 (368-620)||(5184242-5184493)
chr4 (368-490)||(5162540-5162661)
chr4 (117-214)||(55264632-55264729)
chr4 (50-192)||(53924391-53924530)
chr4 (119-214)||(55264380-55264474)
chr4 (83-197)||(54090992-54091106)
chr4 (119-192)||(40942585-40942658)
chr4 (56-196)||(54458706-54458846)
chr4 (526-601)||(5174920-5174995)
chr4 (117-196)||(33614384-33614463)
chr4 (117-196)||(39051328-39051406)
chr4 (123-214)||(44137371-44137462)
chr4 (117-191)||(11383032-11383105)
chr4 (117-194)||(40942675-40942752)
chr4 (119-211)||(13432756-13432847)
chr4 (119-214)||(13302119-13302213)
chr4 (119-198)||(25500468-25500546)
chr4 (145-192)||(45921893-45921940)
chr4 (49-164)||(49448188-49448303)
chr4 (376-490)||(5138715-5138828)
chr4 (117-214)||(7403260-7403357)
chr4 (134-194)||(3465389-3465449)
chr4 (124-196)||(39493771-39493843)
chr4 (117-196)||(13119381-13119460)
chr4 (139-194)||(39051105-39051160)
chr4 (49-100)||(45921830-45921881)
chr4 (119-214)||(55284053-55284148)
chr4 (117-207)||(54458602-54458692)
chr4 (117-157)||(13119230-13119270)
chr4 (126-202)||(56087588-56087664)
[»] chr5 (21 HSPs)
chr5 (119-196)||(36184738-36184815)
chr5 (119-200)||(11275790-11275871)
chr5 (117-174)||(31065868-31065925)
chr5 (117-190)||(36184522-36184595)
chr5 (123-211)||(20399012-20399100)
chr5 (117-192)||(5971891-5971966)
chr5 (117-202)||(9637755-9637837)
chr5 (143-188)||(987328-987373)
chr5 (119-208)||(31046143-31046231)
chr5 (119-192)||(33676544-33676617)
chr5 (117-180)||(8285238-8285301)
chr5 (117-196)||(33391514-33391593)
chr5 (82-195)||(11275659-11275772)
chr5 (119-208)||(31051204-31051292)
chr5 (117-161)||(4902220-4902264)
chr5 (123-179)||(27354306-27354362)
chr5 (119-202)||(8840022-8840105)
chr5 (49-132)||(9900261-9900344)
chr5 (123-196)||(31066088-31066161)
chr5 (167-200)||(32508922-32508955)
chr5 (150-214)||(12640244-12640308)
[»] chr7 (15 HSPs)
chr7 (117-208)||(42709905-42709996)
chr7 (49-194)||(30935271-30935416)
chr7 (119-178)||(21248998-21249057)
chr7 (119-186)||(26752017-26752084)
chr7 (117-214)||(41008922-41009019)
chr7 (117-196)||(12427833-12427912)
chr7 (50-194)||(10524976-10525114)
chr7 (117-196)||(3248320-3248399)
chr7 (83-194)||(16830294-16830405)
chr7 (118-194)||(36478535-36478611)
chr7 (124-211)||(3248445-3248532)
chr7 (117-208)||(35660967-35661058)
chr7 (149-195)||(16810449-16810495)
chr7 (117-177)||(6026-6086)
chr7 (153-181)||(39392564-39392592)
[»] chr1 (25 HSPs)
chr1 (49-196)||(6219625-6219772)
chr1 (117-194)||(38783894-38783971)
chr1 (117-207)||(10595501-10595591)
chr1 (117-214)||(10377546-10377643)
chr1 (123-196)||(28504711-28504784)
chr1 (149-196)||(8792967-8793014)
chr1 (120-214)||(46410826-46410920)
chr1 (117-193)||(27293283-27293359)
chr1 (139-198)||(6219772-6219831)
chr1 (119-214)||(34835720-34835815)
chr1 (117-191)||(34835593-34835667)
chr1 (119-176)||(7790300-7790357)
chr1 (123-180)||(15395209-15395266)
chr1 (117-194)||(27562671-27562748)
chr1 (114-186)||(50147230-50147302)
chr1 (117-211)||(23399510-23399607)
chr1 (131-194)||(27293426-27293489)
chr1 (149-195)||(6061613-6061659)
chr1 (119-161)||(15395431-15395473)
chr1 (149-211)||(40650043-40650104)
chr1 (165-214)||(844627-844676)
chr1 (117-178)||(4066923-4066984)
chr1 (117-190)||(7790411-7790483)
chr1 (122-207)||(38576563-38576648)
chr1 (119-202)||(46410638-46410722)
[»] chr6 (14 HSPs)
chr6 (133-196)||(9530547-9530610)
chr6 (117-196)||(19121854-19121933)
chr6 (117-214)||(3960852-3960949)
chr6 (139-214)||(21394236-21394311)
chr6 (55-196)||(3889971-3890113)
chr6 (144-196)||(30747944-30747996)
chr6 (85-196)||(3960721-3960832)
chr6 (117-194)||(19121985-19122062)
chr6 (117-196)||(21394490-21394568)
chr6 (117-159)||(5656578-5656620)
chr6 (145-194)||(21969302-21969351)
chr6 (139-176)||(24794190-24794227)
chr6 (117-154)||(26330227-26330264)
chr6 (146-178)||(6782912-6782944)
[»] chr3 (19 HSPs)
chr3 (117-196)||(39840659-39840738)
chr3 (117-214)||(55447182-55447279)
chr3 (124-214)||(16298174-16298264)
chr3 (123-197)||(33075275-33075349)
chr3 (117-208)||(45965804-45965895)
chr3 (117-195)||(40472831-40472909)
chr3 (119-196)||(20124246-20124322)
chr3 (49-214)||(29504832-29504997)
chr3 (117-194)||(39840892-39840969)
chr3 (119-194)||(33429121-33429196)
chr3 (124-190)||(1431476-1431542)
chr3 (140-197)||(27812204-27812261)
chr3 (119-196)||(42045771-42045848)
chr3 (119-191)||(29504774-29504846)
chr3 (139-195)||(40860973-40861029)
chr3 (119-183)||(41709291-41709355)
chr3 (123-194)||(31300371-31300442)
chr3 (140-182)||(3910245-3910287)
chr3 (123-197)||(45965672-45965746)
[»] scaffold0137 (1 HSPs)
scaffold0137 (117-202)||(17094-17179)
[»] chr8 (15 HSPs)
chr8 (50-194)||(33229497-33229635)
chr8 (119-213)||(10028876-10028970)
chr8 (117-214)||(10028633-10028730)
chr8 (117-202)||(10028737-10028822)
chr8 (139-197)||(5840352-5840410)
chr8 (117-192)||(29490376-29490451)
chr8 (130-180)||(23768775-23768825)
chr8 (117-163)||(33229620-33229666)
chr8 (119-196)||(21136587-21136664)
chr8 (49-192)||(21136650-21136793)
chr8 (117-176)||(29490606-29490665)
chr8 (140-194)||(41424410-41424464)
chr8 (114-195)||(5840961-5841042)
chr8 (117-178)||(32029639-32029700)
chr8 (118-198)||(23961644-23961724)
[»] chr2 (18 HSPs)
chr2 (117-214)||(17658758-17658855)
chr2 (50-197)||(6511016-6511163)
chr2 (117-188)||(22191390-22191461)
chr2 (130-214)||(22191527-22191611)
chr2 (123-214)||(32013984-32014075)
chr2 (117-192)||(32503046-32503121)
chr2 (117-192)||(33940037-33940112)
chr2 (139-214)||(17672926-17673001)
chr2 (151-214)||(35736709-35736772)
chr2 (152-198)||(18561610-18561656)
chr2 (140-192)||(2451166-2451218)
chr2 (117-196)||(6511148-6511225)
chr2 (139-214)||(17627854-17627929)
chr2 (140-191)||(41440020-41440071)
chr2 (117-174)||(8033878-8033935)
chr2 (117-214)||(8257561-8257658)
chr2 (139-208)||(17184764-17184833)
chr2 (117-201)||(32502807-32502891)
[»] scaffold0022 (2 HSPs)
scaffold0022 (123-211)||(122547-122635)
scaffold0022 (117-207)||(62678-62768)
[»] scaffold0198 (2 HSPs)
scaffold0198 (148-214)||(11907-11973)
scaffold0198 (148-200)||(11542-11594)
[»] scaffold0528 (1 HSPs)
scaffold0528 (119-208)||(1649-1737)
[»] scaffold0252 (1 HSPs)
scaffold0252 (117-165)||(19789-19837)
[»] scaffold0154 (1 HSPs)
scaffold0154 (117-208)||(6220-6311)
[»] scaffold0066 (1 HSPs)
scaffold0066 (117-192)||(11992-12067)
[»] scaffold0340 (2 HSPs)
scaffold0340 (117-194)||(10875-10952)
scaffold0340 (119-196)||(11006-11083)


Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 15 - 340
Target Start/End: Complemental strand, 5163015 - 5162689
Alignment:
Q  15 catagggtctcataatgaattacttacaaaagcactttgttaaaagtttgttaattaggtccttgtatttatgtttttgtcacatgtcgaggaatctggt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  5163015 catagggtctcataatgaattacttacaaaagcactttgttaaaagtttgttaattaggtccttgtctttatgtttttgtcacatgtcgaggaatgtggt 5162916  T
Q  115 tcagaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtggtt 214  Q
    | |||||||||||| |||||||| ||||||||| ||||||||||| |||||||||||||||||||| ||||||| |||||||||  ||||||||||||||    
T  5162915 ttagaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaagacatgacccgatttggtggtt 5162816  T
Q  215 gaagaatt-attattaacaaaagaaaactaaaggcaaatattaatggcattggagttagtattgtacacaaggctctctagaagggaatgattccatcga 313  Q
    |||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5162815 gaagaattaattaatgacaaaagaaaactaaaggcaaatattaatggcattggagttagtattgtacacaaggctctctagaagggaatgattccatcga 5162716  T
Q  314 cagagcatgctctcgagtaaaaaacag 340  Q
    |||||||||||||||||||||||||||    
T  5162715 cagagcatgctctcgagtaaaaaacag 5162689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 340
Target Start/End: Complemental strand, 5184838 - 5184521
Alignment:
Q  17 tagggtctcataatgaattacttacaaaagcactttgttaaaagtttgttaattaggtccttgtatttatgtttttgtcacatgtcgaggaatctggttc 116  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||| ||||||  |||| | ||||||||||||||||||||||| | |||||||||    
T  5184838 tagggtctcataatgaattacttacaaaagcacttagtcaaaagtttgtcaattagaaccttttctttatgtttttgtcacatgtcgaaggatctggttc 5184739  T
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtggttga 216  Q
    |||||||||||| ||| | | ||| |||||| ||||||||||| |||||| || |||||||||  || ||||    ||||||||||||||||||| ||||    
T  5184738 agaaacttttgataaaaaaaatgaataatttgaaatattaatagagttagtgattaatttgag--tggctta----gacatggaccgatttggtgcttga 5184645  T
Q  217 agaattattattaacaaaagaaaactaaaggcaaatattaatggcattggagttagtattgtacacaaggctctctagaagggaatgattccatcgacag 316  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5184644 agaattattattgacaaaagaaaactaaaggcaaatattaatggcattggagttagtattgtacacaaggctctctagaagggaatgattccatcgacag 5184545  T
Q  317 agcatgctctcgagtaaaaaacag 340  Q
    ||||||||||||||||||||||||    
T  5184544 agcatgctctcgagtaaaaaacag 5184521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 368 - 620
Target Start/End: Complemental strand, 5184493 - 5184242
Alignment:
Q  368 caataatactctagcatagggcctgtcacagaatcaatggctgcagaaaatccagaggaattccatacttcatttgatggatctttgaaacaggtctcag 467  Q
    |||||||||||||||||||||||||||||||||||||||||||| |      ||  ||  | |   || |||||||||||||||||||||||||||||||    
T  5184493 caataatactctagcatagggcctgtcacagaatcaatggctgctgccgggtcaatggc-tgcagaacgtcatttgatggatctttgaaacaggtctcag 5184395  T
Q  468 agctatttgaggaactcttggatcttcaaaaataatatatcacaatatcttcaaagttctccagataagtacatcacacaaacaacatgaggaacataaa 567  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5184394 agctatttgaggaactcttggatcttcaaaaataatatatcacaatatcttcaaagttctccagataagtacatcacacaaacaacatgatgaacataaa 5184295  T
Q  568 gttgacaaaaggagcttaaaatccaatgtctcaaactgtctggaattaacggt 620  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  5184294 gttgacaagaggagcttaaaagccaatgtctcaaactgtctggaattaacggt 5184242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 368 - 490
Target Start/End: Complemental strand, 5162661 - 5162540
Alignment:
Q  368 caataatactctagcatagggcctgtcacagaatcaatggctgcagaaaatccagaggaattccatacttcatttgatggatctttgaaacaggtctcag 467  Q
    |||||||||||||||||||||||||||||||||||||||||||| |      ||  ||  | |   || |||||||||||||||||||||||||||||||    
T  5162661 caataatactctagcatagggcctgtcacagaatcaatggctgctgccgggtcaatggc-tgcagaacgtcatttgatggatctttgaaacaggtctcag 5162563  T
Q  468 agctatttgaggaactcttggat 490  Q
    |||||||||||||||||||||||    
T  5162562 agctatttgaggaactcttggat 5162540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 55264632 - 55264729
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtggtt 214  Q
    ||||||||||||||||||||  ||||  ||| ||||||||||| | | |||||||||||||||||| ||||  ||||||||||||| | |||||||||    
T  55264632 agaaacttttgacaaagacacagactcttttgaaatattaatagattcagagactaatttgagagtcacttgtaaagacatggaccaaattggtggtt 55264729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 50 - 192
Target Start/End: Complemental strand, 53924530 - 53924391
Alignment:
Q  50 tttgttaaaagtttgttaattaggtccttgtatttatgtttttgtcacatgtcgaggaatctggttcagaaacttttgacaaagacagtgactaatttaa 149  Q
    ||||| |||||||| | |||||| || |||| |||||||||||||||||||  ||||||  |  || |||||||||||||||||||| |||||| |||      
T  53924530 tttgtcaaaagtttttcaattagatcattgtctttatgtttttgtcacatggtgaggaacgtaattgagaaacttttgacaaagacaatgactagttt-- 53924433  T
Q  150 aatattaataaagttagagactaatttgagagtgacttacaaa 192  Q
      |||||||| ||| | | ||||||||||| ||||||||||||    
T  53924432 -gtattaatagagtcacatactaatttgagggtgacttacaaa 53924391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 55264474 - 55264380
Alignment:
Q  119 aaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtggtt 214  Q
    |||||||||||||||||| |||||| ||| ||||||||||| ||| || |||||| |||| ||||||||| |||||||  |||| |||||||||||    
T  55264474 aaacttttgacaaagacaatgactattttgaaatattaatagagtcagtgactaaattgaaagtgacttataaagaca-cgaccaatttggtggtt 55264380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 83 - 197
Target Start/End: Original strand, 54090992 - 54091106
Alignment:
Q  83 ttatgtttttgtcacatgtcgaggaatctggttcagaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagt 182  Q
    |||||||||||||||||| ||||| | ||  || ||||||||| ||||||||||   |||| ||||||||||||||  ||| |  ||||||||||||| |    
T  54090992 ttatgtttttgtcacatgacgagggacctaattgagaaactttggacaaagacatatactagtttaaaatattaattgagtcaatgactaatttgagaat 54091091  T
Q  183 gacttacaaagacat 197  Q
    ||||||||| |||||    
T  54091092 gacttacaacgacat 54091106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 40942658 - 40942585
Alignment:
Q  119 aaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaa 192  Q
    |||||||||||||||||| |||||| ||||||||||||||||| | ||| ||||||||||| |||  |||||||    
T  40942658 aaacttttgacaaagacaatgactagtttaaaatattaataaaatcagacactaatttgagggtggtttacaaa 40942585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 56 - 196
Target Start/End: Original strand, 54458706 - 54458846
Alignment:
Q  56 aaaagtttgttaattaggtccttgtatttatgtttttgtcacatgtcgaggaatctggttcagaaacttttgacaaagacagtgactaatttaaaatatt 155  Q
    |||||||| | |||||| ||||||| || |||||||||||||||  ||||| | ||  |  ||| |||||||||||||||||  | || ||| |||||||    
T  54458706 aaaagtttctcaattagatccttgtcttaatgtttttgtcacataacgagggacctaatcgagacacttttgacaaagacagatattagtttgaaatatt 54458805  T
Q  156 aataaagttagagactaatttgagagtgacttacaaagaca 196  Q
    |||| |||| |||| |||||| |||||| | ||||||||||    
T  54458806 aatagagtttgagattaatttaagagtggcctacaaagaca 54458846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 526 - 601
Target Start/End: Complemental strand, 5174995 - 5174920
Alignment:
Q  526 ctccagataagtacatcacacaaacaacatgaggaacataaagttgacaaaaggagcttaaaatccaatgtctcaa 601  Q
    |||||||||| |||||||||||||||||| || || ||||||||||||||||||| || || || |||| ||||||    
T  5174995 ctccagataaatacatcacacaaacaacacgatgatcataaagttgacaaaaggaactgaacattcaatttctcaa 5174920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 33614384 - 33614463
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagaca 196  Q
    ||||||||||| ||||||||| ||||| ||| ||||||||||||||| |  |||||||||||||||  | ||||||||||    
T  33614384 agaaacttttgtcaaagacagagactagtttgaaatattaataaagtcatggactaatttgagagtctcctacaaagaca 33614463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 39051328 - 39051406
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagaca 196  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||| | | |||||||| | ||||| ||| |||||||    
T  39051328 agaaacttttgacaaagacagtgactattttaaaatattaatagagtcata-actaatttaaaagtgatttataaagaca 39051406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 214
Target Start/End: Complemental strand, 44137462 - 44137371
Alignment:
Q  123 ttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtggtt 214  Q
    |||||||||||||||  |||| ||| ||||||||||| ||| |||||||||||||||| | ||||||||| | | ||||| | |||||||||    
T  44137462 ttttgacaaagacagatactattttgaaatattaatagagtcagagactaatttgagaatcacttacaaaaataaggaccaaattggtggtt 44137371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 191
Target Start/End: Original strand, 11383032 - 11383105
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaa 191  Q
    |||||||||||||||||||| |||||| |||||||||||| |||||| | |||||||||||| | | ||||||||    
T  11383032 agaaacttttgacaaagaca-tgactattttaaaatattactaaagtcatagactaatttgataatcacttacaa 11383105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 117 - 194
Target Start/End: Original strand, 40942675 - 40942752
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaaga 194  Q
    |||||||||||||||| |||  ||||||||||||||||||||| ||| | |||||||||| | |  ||||||||||||    
T  40942675 agaaacttttgacaaaaacaaagactaatttaaaatattaatatagtcatagactaatttaaaaacgacttacaaaga 40942752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 13432756 - 13432847
Alignment:
Q  119 aaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtg 211  Q
    ||||||||||||||| ||| ||||| |||||||| |||||| |   | |||||||||||||| ||||||||||||||| ||| | ||||||||    
T  13432756 aaacttttgacaaagtcagagacta-tttaaaatgttaatagaagcatagactaatttgagaatgacttacaaagacagggatcaatttggtg 13432847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 13302213 - 13302119
Alignment:
Q  119 aaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtggtt 214  Q
    |||||||||| |||||||| ||||| ||| |||| |||||| |   || ||||||||||||| ||||||||||||||| ||| | |||||||||||    
T  13302213 aaacttttgaaaaagacagagacta-tttgaaatgttaatagaagcagggactaatttgagaatgacttacaaagacagggatcaatttggtggtt 13302119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 119 - 198
Target Start/End: Original strand, 25500468 - 25500546
Alignment:
Q  119 aaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatg 198  Q
    |||||||||||||| ||| ||| |||||||||| |||| |||||| || ||||||||||||| ||||||| |||| ||||    
T  25500468 aaacttttgacaaaaacaatgattaatttaaaa-attattaaagtcagtgactaatttgagaatgacttagaaaggcatg 25500546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 45921893 - 45921940
Alignment:
Q  145 tttaaaatattaataaagttagagactaatttgagagtgacttacaaa 192  Q
    ||||||||||||||||||| ||||||||||| |||| |||||||||||    
T  45921893 tttaaaatattaataaagtcagagactaattcgagaatgacttacaaa 45921940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 49 - 164
Target Start/End: Original strand, 49448188 - 49448303
Alignment:
Q  49 ctttgttaaaagtttgttaattaggtccttgtatttatgtttttgtcacatgtcgaggaatctggttcagaaacttttgacaaagacagtgactaattta 148  Q
    |||||| |||||||| | |||||| ||  ||| ||||||||||||||| ||| ||||  ||||  || | ||||||||||||||||||  ||||| |||     
T  49448188 ctttgtcaaaagtttctcaattagatcactgtctttatgtttttgtcatatgacgagcgatctaattgataaacttttgacaaagacaaagactagtttg 49448287  T
Q  149 aaatattaataaagtt 164  Q
    ||||||||||| ||||    
T  49448288 aaatattaatatagtt 49448303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 490
Target Start/End: Original strand, 5138715 - 5138828
Alignment:
Q  376 ctctagcatagggcctgtcacagaatcaatggctgcagaaaatccagaggaattccatacttcatttgatggatctttgaaacaggtctcagagctattt 475  Q
    |||| ||||||| ||| |||||| |||| | ||||||||   | ||||||||||| | ||||||||||||   ||||||||  || || |||||||||||    
T  5138715 ctctggcataggacctatcacaggatcagtagctgcagagcttgcagaggaattcaagacttcatttgatcagtctttgaacaagttc-cagagctattt 5138813  T
Q  476 gaggaactcttggat 490  Q
    |||||||||||||||    
T  5138814 gaggaactcttggat 5138828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 7403260 - 7403357
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtggtt 214  Q
    |||||||||| || |||||||||| ||  |||||||||||||||||| |  || |||||||| | |   ||||||||||||| ||||||||| |||||    
T  7403260 agaaacttttaaccaagacagtgattatattaaaatattaataaagtcaaggattaatttgaaaatacattacaaagacatgaaccgatttgatggtt 7403357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 3465449 - 3465389
Alignment:
Q  134 acagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaaga 194  Q
    |||| ||||||||||||||||||||||||| | | |||||||| ||| ||| |||||||||    
T  3465449 acagagactaatttaaaatattaataaagtcatatactaatttaagaatgaattacaaaga 3465389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 39493771 - 39493843
Alignment:
Q  124 tttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagaca 196  Q
    |||||||||||||   |||||||||||||||||||| | |||||||| ||||| | ||||| ||| |||||||    
T  39493771 tttgacaaagacatgcactaatttaaaatattaatagaattagagacgaatttaaaagtgagttaaaaagaca 39493843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 13119381 - 13119460
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagaca 196  Q
    |||||||||| |||||||||| ||||| ||| ||||||||||| ||| | | |||||||||| | | | |||||||||||    
T  13119381 agaaacttttaacaaagacagggactattttgaaatattaatagagtcataaactaatttgataatcatttacaaagaca 13119460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 194
Target Start/End: Complemental strand, 39051160 - 39051105
Alignment:
Q  139 gactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaaga 194  Q
    ||||| ||||||||||||||| | | |  |||||||||||||||||||||||||||    
T  39051160 gactattttaaaatattaatagaatcaatgactaatttgagagtgacttacaaaga 39051105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 45921881 - 45921830
Alignment:
Q  49 ctttgttaaaagtttgttaattaggtccttgtatttatgtttttgtcacatg 100  Q
    |||||| |||||||| | ||||||||| |||| |||||||||||||||||||    
T  45921881 ctttgtcaaaagtttatcaattaggtcattgtctttatgtttttgtcacatg 45921830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 214
Target Start/End: Original strand, 55284053 - 55284148
Alignment:
Q  119 aaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtggtt 214  Q
    ||||||||| |||||||||  ||||  || ||||||||||| | |||||||||||||| | | ||||||| ||| |||| |||  |||||||||||    
T  55284053 aaacttttggcaaagacagaaactagattgaaatattaatagaattagagactaatttaataatgacttataaaaacatagactaatttggtggtt 55284148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 117 - 207
Target Start/End: Complemental strand, 54458692 - 54458602
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgattt 207  Q
    |||||||||||||| | |||  || || ||| |||||||||||||||  | |||||| |||||| ||| ||||||||| ||||||| ||||    
T  54458692 agaaacttttgacataaacatagattagtttgaaatattaataaagtcggggactaaattgagaatgatttacaaagatatggaccaattt 54458602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 13119270 - 13119230
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaa 157  Q
    ||||||||||||||||||||| ||||| ||| |||||||||    
T  13119270 agaaacttttgacaaagacagcgactattttgaaatattaa 13119230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 126 - 202
Target Start/End: Complemental strand, 56087664 - 56087588
Alignment:
Q  126 tgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggacc 202  Q
    ||||||| |||| || |||||||||||||||||| | | ||| |||||||| |||||  |||||||| | |||||||    
T  56087664 tgacaaatacagagattaatttaaaatattaatagaatgagacactaattttagagttgcttacaaatatatggacc 56087588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 36184738 - 36184815
Alignment:
Q  119 aaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagaca 196  Q
    ||||||||||||||||||||||||| ||| ||||| ||||| |||||||||||||||||||||||| |||||||||||    
T  36184738 aaacttttgacaaagacagtgactattttgaaatactaatagagttagagactaatttgagagtgatttacaaagaca 36184815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 119 - 200
Target Start/End: Original strand, 11275790 - 11275871
Alignment:
Q  119 aaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatgga 200  Q
    |||||||||||||| | ||  |||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||    
T  11275790 aaacttttgacaaatatagaaactaatttaaaatattaataaagtcagagactaatttgagaatgatttacaaagacatgga 11275871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 31065925 - 31065868
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaat 174  Q
    |||||||||||||||||||| |||||| ||| ||||||||||| ||||||||||||||    
T  31065925 agaaacttttgacaaagacaatgactattttgaaatattaatagagttagagactaat 31065868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 36184595 - 36184522
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttaca 190  Q
    ||||| |||||||| ||| | ||| || ||| ||||||||||||||||| ||||||||||||||||||||||||    
T  36184595 agaaatttttgacatagataatgattattttgaaatattaataaagttatagactaatttgagagtgacttaca 36184522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 20399012 - 20399100
Alignment:
Q  123 ttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtg 211  Q
    |||| |||||||||  ||||||||| ||||||||||| ||| || ||||||||||||| || |||||||||| | ||||| ||||||||    
T  20399012 tttttacaaagacaaggactaatttgaaatattaatagagtcagggactaatttgagaatgtcttacaaagatagggaccaatttggtg 20399100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 192
Target Start/End: Original strand, 5971891 - 5971966
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaa 192  Q
    ||||| |||||||||||||| |||||| ||||||||||||||| |||  ||||||||| ||| | |||||||||||    
T  5971891 agaaagttttgacaaagacaatgactagtttaaaatattaatagagtctgagactaatctgaaaatgacttacaaa 5971966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 202
Target Start/End: Original strand, 9637755 - 9637837
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggacc 202  Q
    |||||||||||||||||||| |||| | |||||||||   ||| |||||| ||||||||||||| | ||||||||||||| |||||    
T  9637755 agaaacttttgacaaagacattgaccattttaaaata---atagagttagggactaatttgagaatcacttacaaagacacggacc 9637837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 987328 - 987373
Alignment:
Q  143 aatttaaaatattaataaagttagagactaatttgagagtgactta 188  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||    
T  987328 aatttaaaatattaatagagttatagactaatttgagagtgactta 987373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 31046143 - 31046231
Alignment:
Q  119 aaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttg 208  Q
    ||||||||||||||| ||  ||||| ||||||||||||||| |||  |||  |||||||||| | |||||||||||||| ||||||||||    
T  31046143 aaacttttgacaaaggcatagactattttaaaatattaatagagtcggaggataatttgagaatcacttacaaagacat-gaccgatttg 31046231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 33676617 - 33676544
Alignment:
Q  119 aaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaa 192  Q
    |||||||||| ||| ||||||| || ||||||||||||||||||||| ||| |||||| ||| | |||||||||    
T  33676617 aaacttttgataaaaacagtgattattttaaaatattaataaagttatagattaatttaagaataacttacaaa 33676544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 8285238 - 8285301
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgaga 180  Q
    |||||||||||||||||| |  ||||| ||||||||||||||| ||| || |||||||||||||    
T  8285238 agaaacttttgacaaagatatagactattttaaaatattaatatagtcagggactaatttgaga 8285301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 33391514 - 33391593
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagaca 196  Q
    |||||||||||| ||||| || ||||||||| ||||| |||||   || ||||||||||||| | |||||||||||||||    
T  33391514 agaaacttttgataaagatagggactaatttgaaatactaatagtttttgagactaatttgataatgacttacaaagaca 33391593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 82 - 195
Target Start/End: Complemental strand, 11275772 - 11275659
Alignment:
Q  82 tttatgtttttgtcacatgtcgaggaatctggttcagaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagag 181  Q
    ||||||||||||||||| | | ||| |||   || ||||||||||||||||||||  ||||| || |||||||||||||| | |  ||||||||| |||     
T  11275772 tttatgtttttgtcacacgactagggatcaaattgagaaacttttgacaaagacaaagactagttgaaaatattaataaaatcatggactaattttagaa 11275673  T
Q  182 tgacttacaaagac 195  Q
    |||  |||||||||    
T  11275672 tgatctacaaagac 11275659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 31051204 - 31051292
Alignment:
Q  119 aaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttg 208  Q
    ||||||||||||||  ||| ||||| |||||||||||| || |||  | | ||||||||||| | ||||||||||||| |||||||||||    
T  31051204 aaacttttgacaaaagcagagactattttaaaatattagtagagtcgggggctaatttgagaatcacttacaaagaca-ggaccgatttg 31051292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 4902264 - 4902220
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaa 161  Q
    ||||||||||| |||||| || |||||||||||||||||||||||    
T  4902264 agaaacttttggcaaagatagggactaatttaaaatattaataaa 4902220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 27354362 - 27354306
Alignment:
Q  123 ttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgag 179  Q
    |||| ||||| |||| ||||| ||||||||||||||| |||||| ||||||||||||    
T  27354362 ttttaacaaaaacagagactattttaaaatattaatatagttagggactaatttgag 27354306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 8840022 - 8840105
Alignment:
Q  119 aaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggacc 202  Q
    ||||||||||||||||||| ||||| ||| ||||||||||| |||  | ||||||| ||||| |  |||||||| ||| |||||    
T  8840022 aaacttttgacaaagacagggactattttgaaatattaatagagtcggggactaatctgagaatcccttacaaatacagggacc 8840105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 132
Target Start/End: Original strand, 9900261 - 9900344
Alignment:
Q  49 ctttgttaaaagtttgttaattaggtccttgtatttatgtttttgtcacatgtcgaggaatctggttcagaaacttttgacaaa 132  Q
    |||||| |||||||| | |||||| || |||||| ||||||||||||||||||| ||| || |  || ||||| ||||||||||    
T  9900261 ctttgtcaaaagtttctcaattagatctttgtatctatgtttttgtcacatgtcaagggatttaattgagaaatttttgacaaa 9900344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 31066088 - 31066161
Alignment:
Q  123 ttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagaca 196  Q
    |||||| |||||||| ||||| ||||||||||||||| |||  | | ||||||| ||| | |||||||||||||    
T  31066088 ttttgataaagacagagactattttaaaatattaatagagtcgggggctaatttaagaatcacttacaaagaca 31066161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 32508922 - 32508955
Alignment:
Q  167 agactaatttgagagtgacttacaaagacatgga 200  Q
    |||||||||||||||||||||||||| |||||||    
T  32508922 agactaatttgagagtgacttacaaaaacatgga 32508955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 12640244 - 12640308
Alignment:
Q  150 aatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtggtt 214  Q
    |||||||||| | | || ||||||||||||| | ||||||||||||| ||||| ||||| |||||    
T  12640244 aatattaatagattcagtgactaatttgagaatcacttacaaagacagggaccaatttgatggtt 12640308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 117 - 208
Target Start/End: Complemental strand, 42709996 - 42709905
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttg 208  Q
    |||||||||||||||||||| |||||| ||||||||||||||| |||  |||||| |||||||| | ||||||||||||| ||||| |||||    
T  42709996 agaaacttttgacaaagacattgactattttaaaatattaatagagtcggagactgatttgagaatcacttacaaagacagggaccaatttg 42709905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 49 - 194
Target Start/End: Original strand, 30935271 - 30935416
Alignment:
Q  49 ctttgttaaaagtttgttaattaggtccttgtatttatgtttttgtcacatgtcgaggaatctggttcagaaacttttgacaaagacagtgactaattta 148  Q
    |||||| |||||||| | | |||| ||||| | ||||||||||||||||||| ||||| | ||  || |     |||||||||||| || || || |||     
T  30935271 ctttgtcaaaagtttttcacttagatccttatctttatgtttttgtcacatgacgagggacctaattgaattttttttgacaaagatagggattagtttg 30935370  T
Q  149 aaatattaataaagttagagactaatttgagagtgacttacaaaga 194  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  30935371 aaatattaataaagtcggagactaatttgagagtgacttacaaaga 30935416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 178
Target Start/End: Original strand, 21248998 - 21249057
Alignment:
Q  119 aaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttga 178  Q
    ||||||||||||||||  | ||||||||||||||||||||||||||||| ||||||||||    
T  21248998 aaacttttgacaaagatggagactaatttaaaatattaataaagttagaaactaatttga 21249057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 26752017 - 26752084
Alignment:
Q  119 aaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgact 186  Q
    ||||||||||||||||||  ||||| ||||||||| ||| ||||| ||||||||||||||||||||||    
T  26752017 aaacttttgacaaagacaaagactattttaaaataataacaaagtcagagactaatttgagagtgact 26752084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 41008922 - 41009019
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtggtt 214  Q
    |||||||||| ||||||| || ||||| ||||||||||||||| ||| ||||| |||||||| | ||||||||||| |||  |||| | |||||||||    
T  41008922 agaaacttttaacaaagatagagactattttaaaatattaatagagtcagagattaatttgaaaatgacttacaaaaacagtgaccaagttggtggtt 41009019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 12427912 - 12427833
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagaca 196  Q
    ||||| ||||| |||||| | |||||||||||||||||||||| ||| |   |||||||||||| |||||||||||||||    
T  12427912 agaaatttttggcaaagataatgactaatttaaaatattaatagagtcatgaactaatttgagaatgacttacaaagaca 12427833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 50 - 194
Target Start/End: Original strand, 10524976 - 10525114
Alignment:
Q  50 tttgttaaaagtttgttaattaggtccttgtatttatgtttttgtcacatgtcgaggaatctggttcagaaacttttgacaaagacagtgactaatttaa 149  Q
    ||||| |||||||| | |||||| ||| | | ||||||||||||||||||| ||||| | ||  || ||||||||||||||||      ||||| ||| |    
T  10524976 tttgtcaaaagtttctcaattagatccctatctttatgtttttgtcacatgacgagggacctaattgagaaacttttgacaaa------gactagtttga 10525069  T
Q  150 aatattaataaagttagagactaatttgagagtgacttacaaaga 194  Q
    ||||||||||  ||  | ||| |||||||||||||||||||||||    
T  10525070 aatattaatagggtcggggacaaatttgagagtgacttacaaaga 10525114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 3248399 - 3248320
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagaca 196  Q
    |||||| ||||||||||||||  |||| ||| | ||||||||||||| ||| ||||||||||||| |  |||||||||||    
T  3248399 agaaacatttgacaaagacagaaactattttgagatattaataaagtcagatactaatttgagagcgggttacaaagaca 3248320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 16830405 - 16830294
Alignment:
Q  83 ttatgtttttgtcacatgtcgaggaatctggttcagaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagt 182  Q
    |||||||||||| ||||| ||| | | ||  || |||||||| |||||||||||   |||| |||  |||||||||| | || || ||||||||||||||    
T  16830405 ttatgtttttgttacatgacgatggacctaattgagaaacttatgacaaagacatgcactagtttggaatattaatagaatttgacactaatttgagagt 16830306  T
Q  183 gacttacaaaga 194  Q
    ||||||||||||    
T  16830305 gacttacaaaga 16830294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 36478535 - 36478611
Alignment:
Q  118 gaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaaga 194  Q
    ||||| ||||||||||  | | |||||||| ||||||| ||||||||| | |||||||||||| ||||||| |||||    
T  36478535 gaaacgtttgacaaagttaataactaatttgaaatattgataaagttataaactaatttgagattgacttataaaga 36478611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 211
Target Start/End: Original strand, 3248445 - 3248532
Alignment:
Q  124 tttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtg 211  Q
    |||||||||||||| ||||| ||| | ||||||||| ||| | |||||||||| |||||   ||| ||||||| ||||| ||||||||    
T  3248445 tttgacaaagacagagactattttgacatattaatatagtcaaagactaatttaagagttgattataaagacagggaccaatttggtg 3248532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 208
Target Start/End: Original strand, 35660967 - 35661058
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttg 208  Q
    |||||||||| |||||||||   |||||||| ||||||||||| | |   ||| |||||||| | ||||||||||| | |||||||||||||    
T  35660967 agaaacttttaacaaagacaagaactaatttgaaatattaatagaatcgaagagtaatttgataatgacttacaaaaatatggaccgatttg 35661058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 16810495 - 16810449
Alignment:
Q  149 aaatattaataaagttagagactaatttgagagtgacttacaaagac 195  Q
    ||||||||||| |||  | ||||||||||||||||||||||||||||    
T  16810495 aaatattaatatagtcggggactaatttgagagtgacttacaaagac 16810449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 6026 - 6086
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttg 177  Q
    |||||| ||||| |||||||  ||||||||| ||||||||| ||||| | |||||||||||    
T  6026 agaaacgtttgataaagacaaagactaatttgaaatattaacaaagtcaaagactaatttg 6086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 153 - 181
Target Start/End: Original strand, 39392564 - 39392592
Alignment:
Q  153 attaataaagttagagactaatttgagag 181  Q
    |||||||||||||||||||||||||||||    
T  39392564 attaataaagttagagactaatttgagag 39392592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 49 - 196
Target Start/End: Complemental strand, 6219772 - 6219625
Alignment:
Q  49 ctttgttaaaagtttgttaattaggtccttgtatttatgtttttgtcacatgtcgaggaatctggttcagaaacttttgacaaagacagtgactaattta 148  Q
    |||||| |||||| | | |||||||||   || ||||||||||||||||||   |||| | ||  || ||||| ||||||||||||||||||||||||||    
T  6219772 ctttgtcaaaagtatctcaattaggtcaccgtctttatgtttttgtcacataatgagggacctaattgagaaatttttgacaaagacagtgactaattta 6219673  T
Q  149 aaatattaataaagttagagactaatttgagagtgacttacaaagaca 196  Q
    ||||||||||||| | | |||||| ||| ||| ||||||| |||||||    
T  6219672 aaatattaataaaatcatagactagtttaagaatgacttataaagaca 6219625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 117 - 194
Target Start/End: Complemental strand, 38783971 - 38783894
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaaga 194  Q
    |||||||||||||||||||| |||||| ||||||||||||||| ||| |  ||||||||||| |||||||||||||||    
T  38783971 agaaacttttgacaaagacaatgactattttaaaatattaatagagtcatggactaatttgaaagtgacttacaaaga 38783894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 117 - 207
Target Start/End: Original strand, 10595501 - 10595591
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgattt 207  Q
    |||||||||||||||||||| |||||||||| ||||||||||| |||||  || |||||||| | || ||||||||||||| |||| ||||    
T  10595501 agaaacttttgacaaagacaatgactaatttgaaatattaatagagttatggattaatttgacaatgtcttacaaagacatagaccaattt 10595591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 10377546 - 10377643
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtggtt 214  Q
    ||||| |||||||| | |||  ||||||||| ||||||||||| ||| | |||||||||||| | ||||||||||||||| ||||| | |||||||||    
T  10377546 agaaaattttgacacaaacatggactaatttgaaatattaatagagtcaaagactaatttgataatgacttacaaagacagggaccaacttggtggtt 10377643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 28504784 - 28504711
Alignment:
Q  123 ttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagaca 196  Q
    |||||||||| |||| ||||| ||| ||||||||||| ||| | |||||||||||||| |||||||||||||||    
T  28504784 ttttgacaaaaacagagactagtttgaaatattaatagagtcatagactaatttgagaatgacttacaaagaca 28504711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 8793014 - 8792967
Alignment:
Q  149 aaatattaataaagttagagactaatttgagagtgacttacaaagaca 196  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||    
T  8793014 aaatattaatagagttggagactaatttgagagtgacttacaaagaca 8792967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 214
Target Start/End: Original strand, 46410826 - 46410920
Alignment:
Q  120 aacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtggtt 214  Q
    ||||||||| |||||||| ||||| ||| |||||||| || ||| | ||||||| |||||| | |||||||||||||  |||| |||||||||||    
T  46410826 aacttttgataaagacagagactattttgaaatattattagagtcatagactaaattgagaatcacttacaaagacaatgaccaatttggtggtt 46410920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 27293359 - 27293283
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaag 193  Q
    ||||||||||| |||||| |   |||||||| ||||||||||| ||| |||||||||||||||| ||| ||||||||    
T  27293359 agaaacttttggcaaagataagaactaatttgaaatattaatagagtcagagactaatttgagaatgatttacaaag 27293283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 6219772 - 6219831
Alignment:
Q  139 gactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatg 198  Q
    ||||| ||||||||||||||| ||||||||||  |||||||| || ||||||||||||||    
T  6219772 gactagtttaaaatattaatagagttagagacagatttgagaatggcttacaaagacatg 6219831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 119 - 214
Target Start/End: Original strand, 34835720 - 34835815
Alignment:
Q  119 aaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtggtt 214  Q
    ||||||||| ||| || || ||||||||||||||||||||| ||||||| |||||||| | | | ||||||||| | | ||||| ||||| |||||    
T  34835720 aaacttttggcaatgatagggactaatttaaaatattaatagagttagaaactaatttaaaaataacttacaaaaatagggaccaatttgatggtt 34835815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 34835667 - 34835593
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaa 191  Q
    ||||||||||||||||||||| ||||| ||| ||||||| |||||||||   ||||||||  || ||||||||||    
T  34835667 agaaacttttgacaaagacagagactagtttgaaatattgataaagttaagaactaatttaggaatgacttacaa 34835593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 7790357 - 7790300
Alignment:
Q  119 aaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaattt 176  Q
    ||||||||||||||||||   | |||||||||||||||||||||| ||| ||||||||    
T  7790357 aaacttttgacaaagacaaaaattaatttaaaatattaataaagtcagaaactaattt 7790300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 15395266 - 15395209
Alignment:
Q  123 ttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgaga 180  Q
    |||| |||||||||| ||||| ||||||||||||||| ||| | ||||||||||||||    
T  15395266 ttttaacaaagacagagactattttaaaatattaatagagtcatagactaatttgaga 15395209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 117 - 194
Target Start/End: Complemental strand, 27562748 - 27562671
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaaga 194  Q
    |||||||||||||||||||||  | |||||| ||||||||||| |||||  | |||||| |||| |||| ||||||||    
T  27562748 agaaacttttgacaaagacagaaattaatttgaaatattaatagagttatggtctaattcgagaatgacatacaaaga 27562671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 114 - 186
Target Start/End: Original strand, 50147230 - 50147302
Alignment:
Q  114 ttcagaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgact 186  Q
    |||| |||||||||||||| | |  ||||| ||||||||||||||||||||  ||| |||||||| |||||||    
T  50147230 ttcaaaaacttttgacaaaaatatagactagtttaaaatattaataaagttgaagattaatttgaaagtgact 50147302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 211
Target Start/End: Complemental strand, 23399607 - 23399510
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaa---tattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtg 211  Q
    |||||||||||||||| ||| |||||||||| |||   |||||||| |||||  ||||||||||| | | ||||| ||||||||| ||| | ||||||    
T  23399607 agaaacttttgacaaaaacaatgactaatttgaaatagtattaatagagttaaggactaatttgatattaacttagaaagacatgcaccaaattggtg 23399510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 27293426 - 27293489
Alignment:
Q  131 aagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaaga 194  Q
    ||||||| | ||| ||| ||||||||||||||| | |||||||||| ||| |||||||||||||    
T  27293426 aagacaggggctagtttgaaatattaataaagtcatagactaatttaagaatgacttacaaaga 27293489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 6061659 - 6061613
Alignment:
Q  149 aaatattaataaagttagagactaatttgagagtgacttacaaagac 195  Q
    |||||||||||||||||  ||||||||||||| | ||||||||||||    
T  6061659 aaatattaataaagttaaggactaatttgagaatcacttacaaagac 6061613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 119 - 161
Target Start/End: Original strand, 15395431 - 15395473
Alignment:
Q  119 aaacttttgacaaagacagtgactaatttaaaatattaataaa 161  Q
    |||||||||||||| ||||| |||| |||||||||||||||||    
T  15395431 aaacttttgacaaaaacagtaactattttaaaatattaataaa 15395473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 40650043 - 40650104
Alignment:
Q  149 aaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtg 211  Q
    ||||||||||  |||||| ||||||||||||| | ||||||||||||||||||| | ||||||    
T  40650043 aaatattaatggagttag-gactaatttgagaatcacttacaaagacatggaccaaattggtg 40650104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 844676 - 844627
Alignment:
Q  165 agagactaatttgagagtgacttacaaagacatggaccgatttggtggtt 214  Q
    |||| |||||||||||||||||||||||||||| |||  | |||||||||    
T  844676 agagtctaatttgagagtgacttacaaagacatagacgaaattggtggtt 844627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 4066984 - 4066923
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttga 178  Q
    ||||||||||||||||||||||||| | ||| || |||||||| ||| || ||| |||||||    
T  4066984 agaaacttttgacaaagacagtgaccattttgaattattaatagagtcagggaccaatttga 4066923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 7790411 - 7790483
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttaca 190  Q
    |||||||||||| ||||| ||  |||||||| ||||||||||| ||| | | |||||||||||| |||||||||    
T  7790411 agaaacttttgataaagatagaaactaatttgaaatattaatagagtcata-actaatttgagaatgacttaca 7790483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 207
Target Start/End: Complemental strand, 38576648 - 38576563
Alignment:
Q  122 cttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgattt 207  Q
    ||||||| |||||||| ||||  ||| ||||||||||| | | | |||||||||||||| ||| ||||||||| | ||||| ||||    
T  38576648 cttttgataaagacagagactggtttgaaatattaatagaatcaaagactaatttgagaatgatttacaaagataaggaccaattt 38576563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 46410722 - 46410638
Alignment:
Q  119 aaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgag-agtgacttacaaagacatggacc 202  Q
    ||||||||||||||||| | ||||| ||| ||||||||||| | | |  ||||||||| || | | |||||||||||||||||||    
T  46410722 aaacttttgacaaagactgagactattttgaaatattaatatattcatggactaatttaagaaatcacttacaaagacatggacc 46410638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 9530610 - 9530547
Alignment:
Q  133 gacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagaca 196  Q
    ||||| ||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  9530610 gacagagactagtttgaaatattaataaagttagagactaatttgagaatgacttacaaagaca 9530547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 19121933 - 19121854
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagaca 196  Q
    |||| ||||||||||||| ||  |||| ||||||||||||||| |||||| ||||| |||||||||| ||||||||||||    
T  19121933 agaagcttttgacaaagatagaaactagtttaaaatattaatagagttagcgactagtttgagagtggcttacaaagaca 19121854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 3960852 - 3960949
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtggtt 214  Q
    |||||||||||||||| |||  ||||||||||||||||||||| ||| | |||||| ||||| | | ||||||||||||| ||||   ||||||||||    
T  3960852 agaaacttttgacaaacacaaggactaatttaaaatattaatagagtcatagactagtttgataataacttacaaagacaaggacaactttggtggtt 3960949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 21394311 - 21394236
Alignment:
Q  139 gactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtggtt 214  Q
    ||||| ||||||||||||||| |||||  |||||||||||||||| ||||||||||||  |||  |||||||||||    
T  21394311 gactattttaaaatattaatagagttaatgactaatttgagagtggcttacaaagacagtgactaatttggtggtt 21394236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 196
Target Start/End: Original strand, 3889971 - 3890113
Alignment:
Q  55 taaaagtttgttaattaggtccttgtatttatgtttttgtcacatgtcgaggaatctggttcagaaacttttgacaaagacagtgactaatttaaaatat 154  Q
    ||||||||| | |||||||||||||| || ||||||||||||||   ||||| | ||  || ||||||||||||||||||||   |||| |||| |||||    
T  3889971 taaaagtttctcaattaggtccttgtcttcatgtttttgtcacacaacgagggacctaattgagaaacttttgacaaagacatgaactagtttagaatat 3890070  T
Q  155 taataaagttaga-gactaatttgagagtgacttacaaagaca 196  Q
    ||||| |||| || |||||  || ||||||||  |||||||||    
T  3890071 taatagagttggaggactaggtttagagtgacgaacaaagaca 3890113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 30747996 - 30747944
Alignment:
Q  144 atttaaaatattaataaagttagagactaatttgagagtgacttacaaagaca 196  Q
    ||||||||||| |||| ||||||||| |||||||||||||||||| |||||||    
T  30747996 atttaaaatatcaatagagttagagattaatttgagagtgacttagaaagaca 30747944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 85 - 196
Target Start/End: Complemental strand, 3960832 - 3960721
Alignment:
Q  85 atgtttttgtcacatgtcgaggaatctggttcagaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtga 184  Q
    ||||||||||||||||  |||| ||||  |  ||||| |||||||||||||| | ||| |||| |||| |||||| |||| |||||||| ||||   |||    
T  3960832 atgtttttgtcacatgatgagggatctaatggagaaagttttgacaaagacaataactgatttgaaatgttaatagagttggagactaagttgatgatga 3960733  T
Q  185 cttacaaagaca 196  Q
    ||||||||||||    
T  3960732 cttacaaagaca 3960721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 117 - 194
Target Start/End: Original strand, 19121985 - 19122062
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaaga 194  Q
    |||||||| | |||||||||   |||| ||| ||||||||||| ||| | |||||||||||| |||||||||||||||    
T  19121985 agaaacttctaacaaagacataaactagtttgaaatattaatagagtcatagactaatttgaaagtgacttacaaaga 19122062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 21394490 - 21394568
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagaca 196  Q
    ||||||| |||||||||| || |  || |||  ||||||||||||||  | |||||||||||||||||||||||||||||    
T  21394490 agaaactattgacaaagatagaggttatttttcaatattaataaagtcgg-gactaatttgagagtgacttacaaagaca 21394568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 5656578 - 5656620
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaata 159  Q
    |||||||||| |||||||||| ||||| |||||||||||||||    
T  5656578 agaaacttttaacaaagacagagactagtttaaaatattaata 5656620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 21969302 - 21969351
Alignment:
Q  145 tttaaaatattaataaagttagagactaatttgagagtgacttacaaaga 194  Q
    ||||||||||||||  ||| |||||||||||||||| | |||||||||||    
T  21969302 tttaaaatattaattgagtcagagactaatttgagattcacttacaaaga 21969351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 24794190 - 24794227
Alignment:
Q  139 gactaatttaaaatattaataaagttagagactaattt 176  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  24794190 gactaatttgaaacattaataaagttagagactaattt 24794227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 26330264 - 26330227
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatat 154  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  26330264 agaaacttttgacaaagacattgactattttaaaatat 26330227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 6782912 - 6782944
Alignment:
Q  146 ttaaaatattaataaagttagagactaatttga 178  Q
    ||||||||||||||||||||| |||||||||||    
T  6782912 ttaaaatattaataaagttagggactaatttga 6782944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 39840738 - 39840659
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagaca 196  Q
    |||||||||||||||| ||| |||||| ||| ||||||||||| ||| |||||||||||||||| | |||||||||||||    
T  39840738 agaaacttttgacaaaaacaatgactattttgaaatattaatagagtcagagactaatttgagaatcacttacaaagaca 39840659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 55447182 - 55447279
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtggtt 214  Q
    |||||||||||| |||||||| ||||| ||||||||||||| | ||| ||||||| |||||||| | |||||||||||||  |||| |||| ||||||    
T  55447182 agaaacttttgagaaagacagagactattttaaaatattaagagagtcagagactgatttgagaatcacttacaaagacaaagaccaatttagtggtt 55447279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 16298264 - 16298174
Alignment:
Q  124 tttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtggtt 214  Q
    ||||||||| |||| || || |||||||||||||||||||    ||||| |||||||||||||||||||||||  ||| ||||||||||||    
T  16298264 tttgacaaacacagagattattttaaaatattaataaagtcgtggactagtttgagagtgacttacaaagacagtgactgatttggtggtt 16298174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 123 - 197
Target Start/End: Original strand, 33075275 - 33075349
Alignment:
Q  123 ttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacat 197  Q
    |||||||||| ||| |||||||||||||||||||||| | |||  || |||||||||||||||||| ||||||||    
T  33075275 ttttgacaaaaacaatgactaatttaaaatattaatagatttaatgattaatttgagagtgacttataaagacat 33075349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 208
Target Start/End: Original strand, 45965804 - 45965895
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttg 208  Q
    |||||||||||| ||||| | | |||| ||| ||||||||||| ||| | | |||||||||||||||||||||||| ||| ||||| |||||    
T  45965804 agaaacttttgaaaaagataataactagtttgaaatattaatagagtcacaaactaatttgagagtgacttacaaatacagggaccaatttg 45965895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 195
Target Start/End: Complemental strand, 40472909 - 40472831
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagac 195  Q
    |||||||||||||||||| |   |||| |||||||| |||||| ||| | |||||||||||||||| ||||||||||||    
T  40472909 agaaacttttgacaaagaaataaactagtttaaaattttaatagagtcaaagactaatttgagagtaacttacaaagac 40472831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 20124246 - 20124322
Alignment:
Q  119 aaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagaca 196  Q
    |||||||||||||| ||| |||||| ||| ||||||| ||| ||| |||||||||||||| | |||||||||||||||    
T  20124246 aaacttttgacaaaaacaatgactattttgaaatattgatagagtcagagactaatttga-aatgacttacaaagaca 20124322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 49 - 214
Target Start/End: Original strand, 29504832 - 29504997
Alignment:
Q  49 ctttgttaaaagtttgttaattaggtccttgtatttatgtttttgtcacatgtcgaggaatctggttcagaaacttttgacaaagacagtgactaattta 148  Q
    |||| |||||||||| | |||||||||  ||| |||||| |||||||||||| ||||| | |   |  |||||||||| ||||||| |   |||| ||||    
T  29504832 ctttattaaaagtttttcaattaggtcaatgtctttatgcttttgtcacatgacgagggaccaaatcgagaaacttttaacaaagataaaaactagttta 29504931  T
Q  149 aaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtggtt 214  Q
    ||||||||||| ||||   ||||||||||||||||  |||||| || ||||||  ||||| |||||    
T  29504932 aaatattaatagagttgaggactaatttgagagtggtttacaatgatatggacaaatttgatggtt 29504997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 117 - 194
Target Start/End: Original strand, 39840892 - 39840969
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaaga 194  Q
    ||||| |||| ||||||| || ||||| ||| ||||||||||||||||||  |||||||||||| | |||||||||||    
T  39840892 agaaaattttaacaaagatagggactattttgaaatattaataaagttaggaactaatttgagaatcacttacaaaga 39840969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 33429121 - 33429196
Alignment:
Q  119 aaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaaga 194  Q
    |||||||||| ||||| | ||| || ||||||||||||||| ||||   ||||||||||| |||||||||||||||    
T  33429121 aaacttttgataaagatattgattattttaaaatattaatagagttgatgactaatttgaaagtgacttacaaaga 33429196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 190
Target Start/End: Original strand, 1431476 - 1431542
Alignment:
Q  124 tttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttaca 190  Q
    |||||||||||||||||||||||| | ||||||||| | ||   ||||||||||||||||| |||||    
T  1431476 tttgacaaagacagtgactaatttgagatattaatagaattgaggactaatttgagagtgaattaca 1431542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 27812261 - 27812204
Alignment:
Q  140 actaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacat 197  Q
    |||||||| ||||||||||| | | |||||||||||| ||| ||||||||||||||||    
T  27812261 actaatttgaaatattaatagactcagagactaatttaagaatgacttacaaagacat 27812204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 42045848 - 42045771
Alignment:
Q  119 aaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagaca 196  Q
    |||||||||||| ||||| |||||| ||| ||||||||||| |||||  || |||||||||  | |||||||||||||    
T  42045848 aaacttttgacatagacaatgactattttgaaatattaatagagttatggattaatttgaggatcacttacaaagaca 42045771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 29504846 - 29504774
Alignment:
Q  119 aaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaa 191  Q
    |||||||| | ||||||| |||||| |||||||||||| || |||||  ||||||||||||| ||| ||||||    
T  29504846 aaacttttaataaagacaatgactagtttaaaatattattagagttatggactaatttgagaatgaattacaa 29504774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 40860973 - 40861029
Alignment:
Q  139 gactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagac 195  Q
    ||||||||| ||||||||||||| | ||||||||| || ||| ||||||||||||||    
T  40860973 gactaatttgaaatattaataaaatcagagactaaattaagaatgacttacaaagac 40861029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 41709291 - 41709355
Alignment:
Q  119 aaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtg 183  Q
    |||||||| ||||||| |   ||| ||||||||||||||||||||| | ||||||||||||||||    
T  41709291 aaacttttaacaaagatataaacttatttaaaatattaataaagttggggactaatttgagagtg 41709355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 194
Target Start/End: Original strand, 31300371 - 31300442
Alignment:
Q  123 ttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaaga 194  Q
    ||||||||||||||   | ||||||||||||| |||| ||||| |||||||||||||| |  ||||||||||    
T  31300371 ttttgacaaagacaaaaattaatttaaaatataaatagagttatagactaatttgagaatctcttacaaaga 31300442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 3910287 - 3910245
Alignment:
Q  140 actaatttaaaatattaataaagttagagactaatttgagagt 182  Q
    |||| ||||||||||||||| |||||| |||||||||||||||    
T  3910287 actagtttaaaatattaatagagttagggactaatttgagagt 3910245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 45965746 - 45965672
Alignment:
Q  123 ttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacat 197  Q
    |||| |||||||||  |||||  || ||||||||||| | | ||||| ||||||||||| |||||||||||||||    
T  45965746 ttttaacaaagacaaggactatattgaaatattaatagaatcagagattaatttgagagcgacttacaaagacat 45965672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 17179 - 17094
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggacc 202  Q
    |||||| ||||||||||||||  |||| ||||||||||||||| |||| | |||||||||||||||  |||||||||||| |||||    
T  17179 agaaacgtttgacaaagacaggaactagtttaaaatattaatagagtttgggactaatttgagagtatcttacaaagacagggacc 17094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 50 - 194
Target Start/End: Complemental strand, 33229635 - 33229497
Alignment:
Q  50 tttgttaaaagtttgttaattaggtccttgtatttatgtttttgtcacatgtcgaggaatctggttcagaaacttttgacaaagacagtgactaatttaa 149  Q
    ||||| |||||||| | |||||| ||| ||| ||||||||||||||||||| ||||| | ||  || ||||||||||||||||      ||||| ||| |    
T  33229635 tttgtcaaaagtttctcaattagatccctgtctttatgtttttgtcacatgacgagggacctaattgagaaacttttgacaaa------gactagtttga 33229542  T
Q  150 aatattaataaagttagagactaatttgagagtgacttacaaaga 194  Q
    ||||||||||  ||| | |||||||||||||| ||||||||||||    
T  33229541 aatattaatagggttggggactaatttgagagcgacttacaaaga 33229497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 119 - 213
Target Start/End: Original strand, 10028876 - 10028970
Alignment:
Q  119 aaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtggt 213  Q
    |||| ||||| |||||||  ||||| ||| ||||||||||||||| | ||||||||||||||||||| ||||||||||  |||  ||||||||||    
T  10028876 aaacctttgaaaaagacaacgactagtttgaaatattaataaagtcaaagactaatttgagagtgacctacaaagacaaagactaatttggtggt 10028970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 214
Target Start/End: Complemental strand, 10028730 - 10028633
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtggtt 214  Q
    ||||||||||| ||| || |  ||||||||| ||||||||||| ||| || ||||||||||||| ||||||||||| |||| || | |||||||||||    
T  10028730 agaaacttttggcaaggataaagactaatttgaaatattaatagagtcagtgactaatttgagaatgacttacaaatacattgatcaatttggtggtt 10028633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 10028822 - 10028737
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggacc 202  Q
    ||||||||||| |||||| || |||| |||| ||||||||||| |||  | ||||||||||||| ||||||||||| |||||||||    
T  10028822 agaaacttttggcaaagatagagactgatttgaaatattaatagagtcggtgactaatttgagaatgacttacaaatacatggacc 10028737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 5840410 - 5840352
Alignment:
Q  139 gactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacat 197  Q
    ||||| ||||||||||||||| | | |||||||||||||||||| ||||||||||||||    
T  5840410 gactattttaaaatattaatagaatcagagactaatttgagagtaacttacaaagacat 5840352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 117 - 192
Target Start/End: Complemental strand, 29490451 - 29490376
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaa 192  Q
    |||||||||| |||||||||   |||| ||||||||||||||| | | | |||||||||||| |||||||||||||    
T  29490451 agaaactttttacaaagacaaaaactattttaaaatattaatataatcatagactaatttgatagtgacttacaaa 29490376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 23768825 - 23768775
Alignment:
Q  130 aaagacagtgactaatttaaaatattaataaagttagagactaatttgaga 180  Q
    |||||||| ||||| ||||||||||||||||| ||| ||||||||||||||    
T  23768825 aaagacagagactattttaaaatattaataaaattatagactaatttgaga 23768775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 33229620 - 33229666
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagt 163  Q
    |||||||||||||||| | || |||||||||||||||||||||||||    
T  33229620 agaaacttttgacaaacagagagactaatttaaaatattaataaagt 33229666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 21136664 - 21136587
Alignment:
Q  119 aaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagaca 196  Q
    |||||||||||||||| |  ||||| ||| ||||||||||| ||| | |||||||||||||| ||||||  |||||||    
T  21136664 aaacttttgacaaagataaggactattttgaaatattaatagagtcaaagactaatttgagaatgactttaaaagaca 21136587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 192
Target Start/End: Original strand, 21136650 - 21136793
Alignment:
Q  49 ctttgttaaaagtttgttaattaggtccttgtatttatgtttttgtcacatgtcgaggaatctggttcagaaacttttgacaaagacagtgactaattta 148  Q
    |||||| |||||||| | |||||||||| | | |||||  ||||||||| || |||  || ||  || ||||  |||||||||||| |||||||| |||     
T  21136650 ctttgtcaaaagtttttcaattaggtccctttctttatacttttgtcacttgacgaaaaacctaattgagaattttttgacaaagatagtgactattttg 21136749  T
Q  149 aaatattaataaagttagagactaatttgagagtgacttacaaa 192  Q
    ||||||||||| ||  | |||||||||| ||| | |||||||||    
T  21136750 aaatattaatagagacaaagactaatttaagaattacttacaaa 21136793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 29490606 - 29490665
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaattt 176  Q
    ||||||||||||| |||| |  || || ||||||||||||||||||| ||||||||||||    
T  29490606 agaaacttttgacgaagataaagattattttaaaatattaataaagtcagagactaattt 29490665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 41424464 - 41424410
Alignment:
Q  140 actaatttaaaatattaataaagttagagactaatttgagagtgacttacaaaga 194  Q
    |||||||||||||||||||| ||| ||||||| |||||| | | |||||||||||    
T  41424464 actaatttaaaatattaatagagtcagagactgatttgaaaattacttacaaaga 41424410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 5840961 - 5841042
Alignment:
Q  114 ttcagaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagac 195  Q
    |||||| |||||||| ||||| ||  ||||| |||||||||||||| ||| | | |||| ||||| |||||| |||||||||    
T  5840961 ttcagacacttttgataaagatagaaactaaattaaaatattaatagagtcaaaaactattttgaaagtgacatacaaagac 5841042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 32029639 - 32029700
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttga 178  Q
    ||||| ||||||||||||||   |||| |||||||||| |||| ||| ||||||||||||||    
T  32029639 agaaatttttgacaaagacatgaactattttaaaatataaatagagtcagagactaatttga 32029700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 198
Target Start/End: Original strand, 23961644 - 23961724
Alignment:
Q  118 gaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatg 198  Q
    ||||||||||| ||||  || ||||| ||| ||||||||||  | | ||||||| |||||| | |||||||||||||||||    
T  23961644 gaaacttttgataaagttagggactattttgaaatattaattgaatcagagactgatttgaaaatgacttacaaagacatg 23961724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 117 - 214
Target Start/End: Complemental strand, 17658855 - 17658758
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtggtt 214  Q
    ||||| |||||||||||||| |||||| ||| ||||||||||| |||| | ||||||||||| ||||||||| ||| ||||||| | |||| ||||||    
T  17658855 agaaatttttgacaaagacaatgactattttgaaatattaatagagttggggactaatttgatagtgacttaaaaatacatggatcaatttagtggtt 17658758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 197
Target Start/End: Complemental strand, 6511163 - 6511016
Alignment:
Q  50 tttgttaaaagtttgttaattaggtccttgtatttatgtttttgtcacatgtcgaggaatctggttcagaaacttttgacaaagacagtgactaatttaa 149  Q
    ||||| |||||||| | |||| ||||| ||| |||||||||||||||||||  || ||||||  || ||||| ||||||||||||  | ||||| ||| |    
T  6511163 tttgtcaaaagtttctcaatttggtccatgtctttatgtttttgtcacatgatgaagaatctatttgagaaatttttgacaaagatggagactattttga 6511064  T
Q  150 aatattaataaagttagagactaatttgagagtgacttacaaagacat 197  Q
    |||||||| | | | | |||||||||||| | ||||||| ||||||||    
T  6511063 aatattaacagaatcatagactaatttgaaaatgacttataaagacat 6511016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 22191461 - 22191390
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgactta 188  Q
    ||||||||||||||||||||  ||||| |||||||||||||| |||||| |||||||||||| | |||||||    
T  22191461 agaaacttttgacaaagacaaagactattttaaaatattaattaagttatagactaatttgaaaatgactta 22191390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 130 - 214
Target Start/End: Original strand, 22191527 - 22191611
Alignment:
Q  130 aaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtggtt 214  Q
    |||||||  ||||| ||||||||||||||| ||| || |||||||||||||||||||||||||| || ||| | | |||||||||    
T  22191527 aaagacatagactattttaaaatattaatagagtcagggactaatttgagagtgacttacaaaggcaaggatcaaattggtggtt 22191611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 214
Target Start/End: Original strand, 32013984 - 32014075
Alignment:
Q  123 ttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtggtt 214  Q
    ||||||||||||||||||||| ||| |||||| |||| ||| | |||||||||||||| | ||||||||| |||  |||| | |||||||||    
T  32013984 ttttgacaaagacagtgactattttgaaatatcaatagagtcatagactaatttgagaatcacttacaaatacagcgaccaaattggtggtt 32014075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 192
Target Start/End: Original strand, 32503046 - 32503121
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaa 192  Q
    |||| ||||||||||||||| |||||| |||||||||| |||| |||  ||||||||||||| | |||||||||||    
T  32503046 agaatcttttgacaaagacaatgactattttaaaatatcaatagagtgtgagactaatttgataatgacttacaaa 32503121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 192
Target Start/End: Original strand, 33940037 - 33940112
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaa 192  Q
    |||||||||||| ||| |||||||||| ||| ||||||||||||||| |  ||||||||||||| | |||||||||    
T  33940037 agaaacttttgaaaaaaacagtgactattttgaaatattaataaagtcaacgactaatttgagaatcacttacaaa 33940112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 17673001 - 17672926
Alignment:
Q  139 gactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtggtt 214  Q
    ||||| ||| ||||||||||| | || ||||||||||||||||||||||| ||| ||||||| | |||| ||||||    
T  17673001 gactattttgaaatattaatagaattggagactaatttgagagtgacttaaaaatacatggatcaatttagtggtt 17672926  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 35736772 - 35736709
Alignment:
Q  151 atattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtggtt 214  Q
    |||||| || ||| || ||||| ||||||||||| ||||||||||||||||| |||||||||||    
T  35736772 atattagtagagtcagtgactagtttgagagtgaattacaaagacatggaccaatttggtggtt 35736709  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 18561656 - 18561610
Alignment:
Q  152 tattaataaagttagagactaatttgagagtgacttacaaagacatg 198  Q
    |||||||||||||  |||||||||||||| |||||||||||||||||    
T  18561656 tattaataaagttgaagactaatttgagaatgacttacaaagacatg 18561610  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 2451166 - 2451218
Alignment:
Q  140 actaatttaaaatattaataaagttagagactaatttgagagtgacttacaaa 192  Q
    ||||||||| ||| |||||| ||||| |||||||||||||| |||||||||||    
T  2451166 actaatttataatgttaatagagttaaagactaatttgagaatgacttacaaa 2451218  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 6511148 - 6511225
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagaca 196  Q
    |||||||||||||||| ||||  |||||||||||||||||  ||| |  ||||||||||| | | |||||||||||||||    
T  6511148 agaaacttttgacaaacacagaaactaatttaaaatatta--aaaatctgagactaatttaaaaatgacttacaaagaca 6511225  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 17627929 - 17627854
Alignment:
Q  139 gactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtggtt 214  Q
    ||||| ||| ||||||||||| |||| | ||||||||||| ||||||||| ||| ||||||| | |||| ||||||    
T  17627929 gactattttgaaatattaatagagttggtgactaatttgaaagtgacttaaaaatacatggatcaatttagtggtt 17627854  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 41440071 - 41440020
Alignment:
Q  140 actaatttaaaatattaataaagttagagactaatttgagagtgacttacaa 191  Q
    ||||||| |||||||||||||||||| |||||||||| | | ||||||||||    
T  41440071 actaattcaaaatattaataaagttatagactaatttaaaaatgacttacaa 41440020  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 8033878 - 8033935
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaat 174  Q
    ||||||||||||||||||||   || | ||||||||||||||||||| ||| ||||||    
T  8033878 agaaacttttgacaaagacataaaccattttaaaatattaataaagtcagaaactaat 8033935  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 8257561 - 8257658
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtggtt 214  Q
    |||||||||| ||||||| |  || |||||||||||| ||||| ||| | |||||||||| | | ||| ||||| ||||||||| | ||||| |||||    
T  8257561 agaaacttttaacaaagaaaaagattaatttaaaataataatagagtcaaagactaatttaaaaatgagttacatagacatggatcaatttgatggtt 8257658  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 17184833 - 17184764
Alignment:
Q  139 gactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttg 208  Q
    ||||| ||||||||||||||| ||| |||||||| ||||| | |  |||||||||||||| ||| |||||    
T  17184833 gactagtttaaaatattaatagagtcagagactagtttgataatagcttacaaagacatgaaccaatttg 17184764  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 32502891 - 32502807
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggac 201  Q
    |||||| ||| |||||||||   |||| ||| ||||| ||||||||| ||  |||||||||||| ||||||||||| ||| ||||    
T  32502891 agaaacatttaacaaagacatgaactattttgaaatactaataaagtgaggaactaatttgagaatgacttacaaaaacaaggac 32502807  T

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Target: scaffold0022 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 122547 - 122635
Alignment:
Q  123 ttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtg 211  Q
    ||||||||||||||  ||||| ||| ||||||||||| ||| |||||||||||||||| |  |||||||||||| ||||| | ||||||    
T  122547 ttttgacaaagacaaagactagtttgaaatattaatagagtcagagactaatttgagaatttcttacaaagacagggaccaacttggtg 122635  T

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Target: scaffold0022; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 117 - 207
Target Start/End: Complemental strand, 62768 - 62678
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgattt 207  Q
    |||||||||||||||||| |   ||||||||||||||| |||| |||    ||||||||||||| |  ||||||||||||| |||| ||||    
T  62768 agaaacttttgacaaagataagaactaatttaaaatatcaatagagtcgttgactaatttgagaatctcttacaaagacatagaccaattt 62678  T

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Target: scaffold0198 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 11907 - 11973
Alignment:
Q  148 aaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttggtggtt 214  Q
    |||||||||||  ||| |  ||||||||||||||||||||||||||||||||| | ||||| |||||    
T  11907 aaaatattaattgagtcatggactaatttgagagtgacttacaaagacatggatcaatttgatggtt 11973  T

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Target: scaffold0198; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 11542 - 11594
Alignment:
Q  148 aaaatattaataaagttagagactaatttgagagtgacttacaaagacatgga 200  Q
    |||||||||||  ||| |  |||||||||||||||||||||||||||||||||    
T  11542 aaaatattaattgagtcatggactaatttgagagtgacttacaaagacatgga 11594  T

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Target: scaffold0528 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0528
Description:

Target: scaffold0528; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 1737 - 1649
Alignment:
Q  119 aaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttg 208  Q
    ||||||||||||||  ||| ||||| |||||||||||| || |||  | | ||||||||||| | ||||||||||||| |||||||||||    
T  1737 aaacttttgacaaaagcagagactattttaaaatattagtagagtcgggggctaatttgagaatcacttacaaagaca-ggaccgatttg 1649  T

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Target: scaffold0252 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 19837 - 19789
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagtta 165  Q
    |||||||||||||||| |||  ||||| |||||||||||||||||||||    
T  19837 agaaacttttgacaaacacaaagactagtttaaaatattaataaagtta 19789  T

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Target: scaffold0154 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 208
Target Start/End: Original strand, 6220 - 6311
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagacatggaccgatttg 208  Q
    |||||||||| |||||| ||   |||| ||| ||||||||||| ||| | |||||||||||||| | ||||||||| ||| ||||| |||||    
T  6220 agaaacttttaacaaaggcaaaaactattttgaaatattaatagagtcaaagactaatttgagaataacttacaaaaacagggaccaatttg 6311  T

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Target: scaffold0066 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 192
Target Start/End: Complemental strand, 12067 - 11992
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaa 192  Q
    |||||||||||| |||| ||   |||| ||||||||||||||||| ||| | || ||||||||||| |||||||||    
T  12067 agaaacttttgataaaggcaaaaactattttaaaatattaataaaattaaaaacaaatttgagagtaacttacaaa 11992  T

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Target: scaffold0340 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 194
Target Start/End: Complemental strand, 10952 - 10875
Alignment:
Q  117 agaaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaaga 194  Q
    |||||||||||||||||| |   |||| ||||||||||||||||| | | ||||||||| |||| | ||||| |||||    
T  10952 agaaacttttgacaaagatataaactattttaaaatattaataaaatcatagactaattagagaatcacttaaaaaga 10875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 11006 - 11083
Alignment:
Q  119 aaacttttgacaaagacagtgactaatttaaaatattaataaagttagagactaatttgagagtgacttacaaagaca 196  Q
    |||||||||| |||||||  ||||| ||||| ||||||||||| | |  ||||||||||||| | |||||| ||||||    
T  11006 aaacttttgataaagacaaagactattttaagatattaataaattcatggactaatttgagaatcacttaccaagaca 11083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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