View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15439_low_7 (Length: 504)

Name: NF15439_low_7
Description: NF15439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15439_low_7
NF15439_low_7
[»] chr3 (33 HSPs)
chr3 (1-339)||(6250505-6250847)
chr3 (4-330)||(6171180-6171501)
chr3 (413-489)||(6250347-6250423)
chr3 (413-489)||(6170144-6170220)
chr3 (29-170)||(6239688-6239837)
chr3 (413-489)||(6171002-6171078)
chr3 (176-330)||(19984854-19985013)
chr3 (176-299)||(46719946-46720070)
chr3 (176-300)||(54986978-54987101)
chr3 (176-300)||(7758407-7758532)
chr3 (176-330)||(19986007-19986168)
chr3 (224-303)||(534552-534632)
chr3 (214-300)||(23770378-23770465)
chr3 (176-330)||(54540727-54540886)
chr3 (176-300)||(49216252-49216377)
chr3 (214-300)||(31645016-31645103)
chr3 (214-300)||(54654277-54654364)
chr3 (176-300)||(7267649-7267773)
chr3 (176-300)||(46721191-46721316)
chr3 (214-301)||(12700216-12700304)
chr3 (176-301)||(8875911-8876037)
chr3 (176-301)||(54539760-54539886)
chr3 (233-301)||(784917-784986)
chr3 (176-300)||(49398132-49398256)
chr3 (176-288)||(51347273-51347386)
chr3 (179-297)||(52104489-52104604)
chr3 (214-300)||(8456520-8456607)
chr3 (222-299)||(34019117-34019195)
chr3 (176-301)||(47614190-47614316)
chr3 (194-227)||(18388947-18388980)
chr3 (176-300)||(47610551-47610676)
chr3 (241-301)||(47615547-47615608)
chr3 (230-301)||(52105637-52105709)
[»] chr8 (34 HSPs)
chr8 (176-301)||(1824048-1824174)
chr8 (176-301)||(1858493-1858619)
chr8 (176-300)||(8389660-8389785)
chr8 (224-300)||(30336472-30336549)
chr8 (176-301)||(10006349-10006475)
chr8 (214-330)||(18488199-18488320)
chr8 (176-299)||(22220393-22220517)
chr8 (176-300)||(29968308-29968432)
chr8 (176-300)||(30570227-30570351)
chr8 (176-300)||(40471118-40471242)
chr8 (213-300)||(29043440-29043528)
chr8 (214-300)||(18978062-18978149)
chr8 (199-274)||(24361191-24361266)
chr8 (176-301)||(10007733-10007859)
chr8 (196-299)||(17844302-17844403)
chr8 (176-300)||(18979091-18979216)
chr8 (176-300)||(30335644-30335769)
chr8 (214-301)||(5514024-5514112)
chr8 (214-300)||(18970953-18971040)
chr8 (222-300)||(24122933-24123012)
chr8 (231-301)||(34625170-34625241)
chr8 (176-247)||(42982682-42982753)
chr8 (214-300)||(43661308-43661395)
chr8 (174-300)||(43661794-43661921)
chr8 (203-300)||(2379895-2379991)
chr8 (199-300)||(8388490-8388592)
chr8 (176-301)||(22221334-22221460)
chr8 (176-301)||(22227676-22227802)
chr8 (239-300)||(24123869-24123931)
chr8 (176-299)||(1823557-1823682)
chr8 (176-299)||(1858002-1858127)
chr8 (194-227)||(2374819-2374852)
chr8 (176-300)||(11282013-11282138)
chr8 (176-220)||(3207988-3208032)
[»] chr7 (16 HSPs)
chr7 (176-301)||(18371429-18371555)
chr7 (176-300)||(42886257-42886382)
chr7 (194-301)||(22629509-22629617)
chr7 (214-301)||(18372427-18372515)
chr7 (214-300)||(34352757-34352844)
chr7 (176-301)||(7500460-7500585)
chr7 (176-301)||(22630422-22630548)
chr7 (162-300)||(127328-127465)
chr7 (176-301)||(7501822-7501948)
chr7 (241-297)||(21508407-21508464)
chr7 (176-298)||(21505421-21505542)
chr7 (265-300)||(769508-769543)
chr7 (222-300)||(31659674-31659753)
chr7 (176-297)||(43900463-43900583)
chr7 (176-301)||(46482602-46482728)
chr7 (233-297)||(14998042-14998107)
[»] chr1 (31 HSPs)
chr1 (176-300)||(51684371-51684496)
chr1 (176-330)||(39151936-39152095)
chr1 (176-330)||(39153053-39153212)
chr1 (176-300)||(11437170-11437295)
chr1 (176-297)||(51685739-51685861)
chr1 (222-301)||(43058836-43058916)
chr1 (176-301)||(39222443-39222570)
chr1 (176-330)||(45148586-45148744)
chr1 (195-300)||(45157180-45157286)
chr1 (176-300)||(11436047-11436172)
chr1 (229-301)||(30248170-30248242)
chr1 (214-301)||(50680374-50680462)
chr1 (214-300)||(44411937-44412024)
chr1 (176-263)||(35067011-35067098)
chr1 (176-300)||(24422805-24422930)
chr1 (176-300)||(24426046-24426171)
chr1 (168-300)||(45156046-45156179)
chr1 (176-300)||(52276134-52276259)
chr1 (163-300)||(45149941-45150079)
chr1 (176-300)||(40384729-40384855)
chr1 (176-301)||(43059976-43060102)
chr1 (203-300)||(46066555-46066652)
chr1 (214-301)||(25652757-25652845)
chr1 (162-301)||(30249460-30249600)
chr1 (222-300)||(44404493-44404572)
chr1 (181-227)||(31084626-31084672)
chr1 (229-301)||(31194111-31194184)
chr1 (229-297)||(36612910-36612979)
chr1 (176-300)||(52274973-52275098)
chr1 (176-264)||(11190390-11190478)
chr1 (268-304)||(39221412-39221448)
[»] chr5 (25 HSPs)
chr5 (176-330)||(24332918-24333077)
chr5 (176-300)||(42196171-42196296)
chr5 (176-299)||(16650827-16650951)
chr5 (176-300)||(42195139-42195262)
chr5 (221-300)||(16650042-16650122)
chr5 (176-287)||(21835046-21835157)
chr5 (176-299)||(25523074-25523198)
chr5 (174-330)||(36486425-36486586)
chr5 (195-300)||(2186794-2186900)
chr5 (176-301)||(18486872-18486998)
chr5 (176-301)||(19752917-19753042)
chr5 (214-299)||(25055455-25055541)
chr5 (176-266)||(40255678-40255768)
chr5 (176-300)||(28538681-28538806)
chr5 (214-330)||(1015527-1015648)
chr5 (203-297)||(5962546-5962641)
chr5 (199-330)||(28539757-28539893)
chr5 (176-300)||(22940594-22940718)
chr5 (176-330)||(33160224-33160382)
chr5 (181-227)||(36641153-36641199)
chr5 (241-297)||(5961476-5961533)
chr5 (199-247)||(1016888-1016936)
chr5 (214-301)||(19754100-19754188)
chr5 (214-301)||(25524068-25524156)
chr5 (229-300)||(36485358-36485430)
[»] chr6 (14 HSPs)
chr6 (179-287)||(3333010-3333119)
chr6 (174-297)||(6840197-6840319)
chr6 (176-300)||(5658761-5658886)
chr6 (176-300)||(6842254-6842379)
chr6 (229-300)||(26575025-26575097)
chr6 (231-301)||(3333495-3333566)
chr6 (199-300)||(1829574-1829676)
chr6 (176-330)||(29473082-29473241)
chr6 (222-302)||(10785882-10785963)
chr6 (176-300)||(27437833-27437958)
chr6 (176-301)||(7314885-7315010)
chr6 (176-301)||(12382681-12382807)
chr6 (176-300)||(8659270-8659395)
chr6 (176-299)||(16704469-16704593)
[»] chr4 (22 HSPs)
chr4 (176-300)||(1290169-1290294)
chr4 (195-330)||(10448197-10448337)
chr4 (174-330)||(31599792-31599953)
chr4 (176-297)||(10447011-10447134)
chr4 (176-301)||(12129628-12129754)
chr4 (176-300)||(31600956-31601081)
chr4 (176-300)||(35935504-35935629)
chr4 (176-300)||(1834124-1834250)
chr4 (176-300)||(1289102-1289227)
chr4 (176-300)||(19750546-19750670)
chr4 (176-300)||(19789136-19789260)
chr4 (176-259)||(1963201-1963284)
chr4 (176-219)||(4098662-4098705)
chr4 (199-300)||(37728536-37728638)
chr4 (176-301)||(3927671-3927797)
chr4 (199-300)||(13509330-13509432)
chr4 (179-299)||(8758809-8758930)
chr4 (176-300)||(10471359-10471484)
chr4 (176-300)||(25685793-25685918)
chr4 (238-301)||(1835072-1835136)
chr4 (214-301)||(21178039-21178127)
chr4 (195-287)||(50909296-50909388)
[»] chr2 (21 HSPs)
chr2 (176-301)||(18905958-18906083)
chr2 (214-330)||(22587544-22587664)
chr2 (176-263)||(7899891-7899978)
chr2 (203-300)||(11996739-11996837)
chr2 (176-296)||(22587929-22588049)
chr2 (176-301)||(13030297-13030420)
chr2 (176-263)||(38840502-38840589)
chr2 (176-301)||(36450891-36451016)
chr2 (200-288)||(23869518-23869607)
chr2 (176-300)||(36449783-36449908)
chr2 (176-300)||(1034441-1034565)
chr2 (214-300)||(11258782-11258869)
chr2 (214-300)||(18299416-18299503)
chr2 (176-301)||(22848196-22848322)
chr2 (203-300)||(24475256-24475354)
chr2 (195-299)||(802563-802668)
chr2 (199-247)||(24476869-24476917)
chr2 (176-247)||(13567977-13568048)
chr2 (176-297)||(18904372-18904494)
chr2 (195-299)||(810753-810858)
chr2 (168-224)||(12350020-12350076)
[»] scaffold0586 (2 HSPs)
scaffold0586 (203-301)||(8997-9095)
scaffold0586 (176-288)||(6348-6461)
[»] scaffold0320 (1 HSPs)
scaffold0320 (176-301)||(19493-19619)
[»] scaffold2034 (1 HSPs)
scaffold2034 (176-300)||(238-363)
[»] scaffold1303 (1 HSPs)
scaffold1303 (176-300)||(1444-1569)
[»] scaffold0019 (2 HSPs)
scaffold0019 (176-300)||(61430-61555)
scaffold0019 (176-300)||(60095-60220)
[»] scaffold0302 (2 HSPs)
scaffold0302 (176-300)||(18747-18872)
scaffold0302 (176-252)||(17475-17551)
[»] scaffold0003 (1 HSPs)
scaffold0003 (176-300)||(49404-49529)
[»] scaffold0049 (2 HSPs)
scaffold0049 (176-287)||(7399-7511)
scaffold0049 (268-301)||(7889-7922)
[»] scaffold0002 (1 HSPs)
scaffold0002 (176-227)||(454934-454985)


Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 6250847 - 6250505
Alignment:
Q  1 cacctcatataaaatgtgaagttggtaatccaaagttcttccgcaatatctatttggctaagaattattccatccatccaaactcaattgaagctcatta 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  6250847 cacctcatataaaatgagaagttggtaatccaaagttcttccgcaatatctacttggctaagaattattccatccatccaaactcaattgaagctcatca 6250748  T
Q  101 accacttaattgttgttggccattttcactttacatttccaatgtatcttaatttacacagtaaatcttagattgaagtgcacttttccccttttaagtt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  6250747 accacttaattgttgttggccattttcactttacatttccaatgtatcttaatttacacagtaaatcttagactgaagtgcactttcccccttttaagtt 6250648  T
Q  201 ttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaaccatttgcatctttgatccttttggccaattttgac 300  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6250647 ttaaaaaattgtgattttggtcccctatgtacaaaacctaaaattttagccctctaagatttaaccatttgcatctttgatccttttgaccaattttgac 6250548  T
Q  301 taatc----cctacatggcatgccacatgtgtaaattgaattt 339  Q
    |||||    ||||||||||| ||||||| ||||||||||||||    
T  6250547 taatcaatgcctacatggcacgccacatatgtaaattgaattt 6250505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 4 - 330
Target Start/End: Complemental strand, 6171501 - 6171180
Alignment:
Q  4 ctcatataaaatgtgaagttggtaatccaaagttcttccgcaatatctatttggctaagaattattccatccatccaaactcaattgaagctcattaacc 103  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6171501 ctcataaaaaatgagaagttggtaatccaaagttcttccgcaatatctacttggctaagaattattccatccatccaaactcgattgaagctcattaacc 6171402  T
Q  104 acttaattgttgttggccattttcactttacatttccaatgtatcttaatttacacagtaaatcttagattgaagtgcacttttccccttttaagtttta 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||        ||| | |||||||||    
T  6171401 acttaattgttgttggccattttcactttacatttccaatgtatcttaatttacacagtaaatcttaggctgaagtg--------cccctctaagtttta 6171310  T
Q  204 aaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaaccatttgcatctttgatccttttggccaattttgactaa 303  Q
    ||||||||||||||||| |||||| |||||||| ||| ||||||  ||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  6171309 aaaaattgtgattttgg-cccctatgtacaaaaactataattttgaccctctaagatttaaacatttgcatctttggtccttttggccaattttgactaa 6171211  T
Q  304 tc----cctacatggcatgccacatgtgtaa 330  Q
    ||    ||||| ||||| |||||||||||||    
T  6171210 tcaatgcctacttggcacgccacatgtgtaa 6171180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 413 - 489
Target Start/End: Complemental strand, 6250423 - 6250347
Alignment:
Q  413 ttcaacaactccatccaatcatcctcatctctaacgtttctccgaactccacccaatcaattcaactcaagattcat 489  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6250423 ttcaacaactccatccaatcatcctcatctctaacgtttctccgaactccacccaatcaattcaactcaagattcat 6250347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 413 - 489
Target Start/End: Complemental strand, 6170220 - 6170144
Alignment:
Q  413 ttcaacaactccatccaatcatcctcatctctaacgtttctccgaactccacccaatcaattcaactcaagattcat 489  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6170220 ttcaacaactccatccaatcatcctcatctctaacgtttctccgaacttcacccaatcaattcaactcaagattcat 6170144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 170
Target Start/End: Complemental strand, 6239837 - 6239688
Alignment:
Q  29 tccaaagttcttccgcaatatctatttggctaagaattattccatccatccaaact--------caattgaagctcattaaccacttaattgttgttggc 120  Q
    |||||||||||||||||||||| | ||| |||||||||||||||||||||| || |        | || |||||||||||||||||||||| ||||||||    
T  6239837 tccaaagttcttccgcaatatc-acttgtctaagaattattccatccatccgaatttcgttgttcgatggaagctcattaaccacttaattattgttggc 6239739  T
Q  121 cattttcactttacatttcc-aatgtatcttaatttacacagtaaatctta 170  Q
    |||||||||||||||||||| ||||| |||||||||| |||||||||||||    
T  6239738 cattttcactttacatttccaaatgtttcttaatttatacagtaaatctta 6239688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 413 - 489
Target Start/End: Complemental strand, 6171078 - 6171002
Alignment:
Q  413 ttcaacaactccatccaatcatcctcatctctaacgtttctccgaactccacccaatcaattcaactcaagattcat 489  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  6171078 ttcaacaactccatccaatcatcctcatctctaacgtttctctgaacttcacccaatcaattcaactcaagattcat 6171002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 176 - 330
Target Start/End: Original strand, 19984854 - 19985013
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaa-ccatttgcat 274  Q
    ||||||||||||||||   ||||||| ||||| |||  ||||||| |||||| |||||||| ||||||||||  |||| |||||||||| || |||||||    
T  19984854 aagtgcacttttccccccctaagtttcaaaaacttgcaattttggccccctatgtacaaaaactacaattttgaccctttaagatttaacccctttgcat 19984953  T
Q  275 ctttgatccttttggccaattttgac----taatccctacatggcatgccacatgtgtaa 330  Q
    ||||| ||||||||| ||||||||||     ||| ||||| |||||||||||||||||||    
T  19984954 ctttggtccttttggtcaattttgaccagtcaatgcctacgtggcatgccacatgtgtaa 19985013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 176 - 299
Target Start/End: Original strand, 46719946 - 46720070
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    ||||||| ||||||||  |||| ||||||||| ||| |||||||| |||||| ||| |||| |||||||||||| |||||||||||||  ||||||||||    
T  46719946 aagtgcatttttccccccttaacttttaaaaagttgcgattttggccccctatgtataaaaactacaattttagtcctctaagatttagcccatttgcat 46720045  T
Q  275 ctttgatccttttggccaattttga 299  Q
     |||| ||||||||| |||||||||    
T  46720046 atttggtccttttggtcaattttga 46720070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 54987101 - 54986978
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaac-catttgcat 274  Q
    |||||||||||||||| |  |||||| ||||| ||| |||||| |||||||| ||| |||| ||| ||||||  |||||||||||||| | | |||||||    
T  54987101 aagtgcacttttccccct--aagtttcaaaaagttgcgattttagtcccctatgtataaaaactataattttgaccctctaagatttagctcctttgcat 54987004  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    |||||||| |||||||||||||||||    
T  54987003 ctttgatcattttggccaattttgac 54986978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 7758407 - 7758532
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaa-ccatttgcat 274  Q
    |||||||||||| |||  |||| ||| ||||| |||  ||||||  |||||| |||||||| |||||||||| |||| ||||||||||| || |||| ||    
T  7758407 aagtgcactttttcccccttaactttcaaaaacttgcaattttgaccccctaagtacaaaaactacaatttttgccccctaagatttaacccctttgtat 7758506  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    ||||| ||||||||| ||||||||||    
T  7758507 ctttggtccttttggtcaattttgac 7758532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 176 - 330
Target Start/End: Complemental strand, 19986168 - 19986007
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcc--cctacgtacaaaacctacaattttagccctctaagatttaa-ccatttgc 272  Q
    ||||||||||||||||| |||||||| ||||| |||  ||||||| ||  |||| ||| |||| ||||||||||  ||||||||||||||| || |||||    
T  19986168 aagtgcacttttcccctcttaagtttcaaaaacttgcaattttggcccctcctatgtataaaaactacaattttgaccctctaagatttaacccctttgc 19986069  T
Q  273 atctttgatccttttggccaattttgac----taatccctacatggcatgccacatgtgtaa 330  Q
    ||||||| || ||| || ||||||||||     ||| ||||| ||||||||||| |||||||    
T  19986068 atctttggtcatttcggtcaattttgaccagtcaatgcctacgtggcatgccacgtgtgtaa 19986007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 224 - 303
Target Start/End: Original strand, 534552 - 534632
Alignment:
Q  224 cctacgtacaaaacctacaattttagccctctaagatttaacc-atttgcatctttgatccttttggccaattttgactaa 303  Q
    |||| |||||||| |||||||||| |||| |||||||||| || ||||||||||||| ||| |||||||||||||||||||    
T  534552 cctatgtacaaaaactacaattttggccccctaagatttagcctatttgcatctttggtccatttggccaattttgactaa 534632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 214 - 300
Target Start/End: Complemental strand, 23770465 - 23770378
Alignment:
Q  214 attttggtcccctacgtacaaaacctacaattttagccctctaagatttaa-ccatttgcatctttgatccttttggccaattttgac 300  Q
    ||||||||||| || |||||||| ||||||||||||||| ||||||||||| || |||||||||||  ||||||||| ||| ||||||    
T  23770465 attttggtcccttatgtacaaaaactacaattttagccccctaagatttaacccctttgcatctttagtccttttggtcaactttgac 23770378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 176 - 330
Target Start/End: Complemental strand, 54540886 - 54540727
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    ||||||||||||||||  |||| ||| ||||| |||  ||||||  ||| || |||||||| |||||||||| |||| ||||||||||  || ||||||     
T  54540886 aagtgcacttttccccccttaactttcaaaaacttgcaattttgaccccttaagtacaaaaactacaattttggccccctaagatttagcccctttgcaa 54540787  T
Q  275 ctttgatccttttggccaattttgac----taatccctacatggcatgccacatgtgtaa 330  Q
    ||||||||||||| | ||||||||||     ||| ||||| ||||||||||| |||||||    
T  54540786 ctttgatcctttttgtcaattttgaccggtcaatgcctacgtggcatgccacgtgtgtaa 54540727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 49216252 - 49216377
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaac-catttgcat 274  Q
    |||||||||||||| |   ||||||| ||||| |||  ||||||  |||||| |||||||| |||||||| |  |||  ||||||||| | |||||||||    
T  49216252 aagtgcacttttccacgcctaagtttcaaaaagttgcaattttgaccccctatgtacaaaaactacaattatgtccccttaagatttagctcatttgcat 49216351  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    |||||||| |||||||||||||||||    
T  49216352 ctttgatcattttggccaattttgac 49216377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 300
Target Start/End: Original strand, 31645016 - 31645103
Alignment:
Q  214 attttggtcccctacgtacaaaacctacaattttagccctctaagatttaacc-atttgcatctttgatccttttggccaattttgac 300  Q
    ||||||| |||||| || ||||| ||||||||||| ||  |||||||||| || ||||||||||||| |||||||| |||||||||||    
T  31645016 attttggccccctaagtgcaaaaactacaattttaacctcctaagatttagcccatttgcatctttggtccttttgaccaattttgac 31645103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 300
Target Start/End: Complemental strand, 54654364 - 54654277
Alignment:
Q  214 attttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcatctttgatccttttggccaattttgac 300  Q
    |||||||||  ||| ||||||||  ||||||||||||||||||  ||||| ||||||||||||||| |||||||| ||||| ||||||    
T  54654364 attttggtcttctatgtacaaaaattacaattttagccctctagaatttagaccatttgcatctttaatccttttagccaactttgac 54654277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 7267649 - 7267773
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacc-atttgcat 274  Q
    ||||||||||||||||  |||| ||| ||||| |||  ||||||| |||||| ||||| || |||||||||| |||| |||||||||| ||   |||||     
T  7267649 aagtgcacttttcccc-cttaactttcaaaaacttgcaattttggccccctaagtacagaaactacaattttggccccctaagatttagcctcattgcaa 7267747  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    |||| |||||||||| ||||||||||    
T  7267748 ctttaatccttttggtcaattttgac 7267773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 46721316 - 46721191
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    ||||||||||||| ||   ||| ||||||||| ||| ||||||   |||||| |||||||| |||||||||||| || ||||||||||  || |||||||    
T  46721316 aagtgcacttttctccccctaacttttaaaaagttgcgattttaaccccctatgtacaaaaactacaattttagtcccctaagatttagcccctttgcat 46721217  T
Q  275 ctttgatccttttggccaattttgac 300  Q
     |||| ||||| ||| ||||||||||    
T  46721216 atttggtccttctggtcaattttgac 46721191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 301
Target Start/End: Original strand, 12700216 - 12700304
Alignment:
Q  214 attttggtcccctacgtacaaaacctacaattttagccctctaagatttaaccat-ttgcatctttgatccttttggccaattttgact 301  Q
    ||||||| |||||| |||||||| ||||||||||  ||| ||| |||||| |||  ||||||||||| ||||||||| |||||||||||    
T  12700216 attttggccccctaagtacaaaaactacaattttgaccccctatgatttagccacattgcatctttggtccttttggtcaattttgact 12700304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 301
Target Start/End: Original strand, 8875911 - 8876037
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcat 274  Q
    ||||||||||||| ||  |||||||  |||||  ||  ||||| | ||| || |||||||| |||||||||| |||| |||||||||| ||| |||||||    
T  8875911 aagtgcacttttcaccccttaagttcgaaaaagctgcaattttagccccttatgtacaaaaactacaattttggccccctaagatttagccaatttgcat 8876010  T
Q  275 ctttgatccttttggccaattttgact 301  Q
     |||| ||||||| | |||||||||||    
T  8876011 atttggtccttttagtcaattttgact 8876037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 301
Target Start/End: Original strand, 54539760 - 54539886
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaac-catttgcat 274  Q
    |||||||||||||| |  |||| ||| ||||| |||  |||||   ||||||  ||||||| ||||||||||   || |||||||||| | ||||||||     
T  54539760 aagtgcacttttccacccttaactttcaaaaacttgcaattttaaccccctaaatacaaaaactacaattttgatcccctaagatttagctcatttgcaa 54539859  T
Q  275 ctttgatccttttggccaattttgact 301  Q
    ||||||||||||| |||||||||||||    
T  54539860 ctttgatcctttttgccaattttgact 54539886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 784986 - 784917
Alignment:
Q  233 aaaacctacaattttagccctctaagatttaacca-tttgcatctttgatccttttggccaattttgact 301  Q
    |||| |||||||||||  ||||||| ||||||||  ||||||||||||||| ||||| ||||||||||||    
T  784986 aaaaactacaattttaatcctctaaaatttaacctctttgcatctttgatcattttgaccaattttgact 784917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 49398132 - 49398256
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaac-catttgcat 274  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||   ||| | ||||||  ||||||||| |||   ||||||||| | ||||||||     
T  49398132 aagtgcacttttccccctt-aagttttaaaaaattattattttggtgttctatgaacaaaaattacaattttggcctcttaagatttagctcatttgcaa 49398230  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    |||||||||||||  ||||| |||||    
T  49398231 ctttgatcctttttaccaatgttgac 49398256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 176 - 288
Target Start/End: Original strand, 51347273 - 51347386
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaa-ccatttgcat 274  Q
    ||||||||||| ||||| |||||||| ||||| |||  |||||||||| ||| | ||||||   ||||||||  ||| ||||||||||| || ||||||     
T  51347273 aagtgcactttccccctcttaagtttgaaaaagttgcaattttggtcctctatgaacaaaaatgacaattttgaccccctaagatttaacccgtttgcaa 51347372  T
Q  275 ctttgatccttttg 288  Q
    |||||||| |||||    
T  51347373 ctttgatcattttg 51347386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 179 - 297
Target Start/End: Original strand, 52104489 - 52104604
Alignment:
Q  179 tgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaac-catttgcatctt 277  Q
    ||||||||||||| |  || ||| ||||| |||| ||||||||||  || |||||||| ||| |||||| |||  |||||||||||| ||||||||||||    
T  52104489 tgcacttttccccct--aactttcaaaaagttgtaattttggtcc--tatgtacaaaaactataattttggccacctaagatttaactcatttgcatctt 52104584  T
Q  278 tgatccttttggccaatttt 297  Q
    || || ||||| ||||||||    
T  52104585 tggtcattttgaccaatttt 52104604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 300
Target Start/End: Original strand, 8456520 - 8456607
Alignment:
Q  214 attttggtcccctacgtacaaaacctacaattttagccctctaagatttaacc-atttgcatctttgatccttttggccaattttgac 300  Q
    ||||||||||||||  ||||||| |||||||||| |||| |||||||||| ||   |||||  |||||||||||| | ||||||||||    
T  8456520 attttggtcccctaaatacaaaaactacaattttggccccctaagatttagcctcattgcaaatttgatccttttagtcaattttgac 8456607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 34019195 - 34019117
Alignment:
Q  222 cccctacgtacaaaacctacaattttagccctctaagatttaac-catttgcatctttgatccttttggccaattttga 299  Q
    |||||| |||||||  |||||||||| | || |||| ||||| | |||||||||||||| ||||||||| |||||||||    
T  34019195 cccctaggtacaaacactacaattttggtcccctaaaatttagctcatttgcatctttggtccttttggtcaattttga 34019117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 301
Target Start/End: Original strand, 47614190 - 47614316
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacc-atttgcat 274  Q
    |||||||||||| ||| | ||| ||| ||||| |||  ||||||| |||||| |||  ||| | |||||||| |||| |||||||||| ||  |||||||    
T  47614190 aagtgcactttttcccctctaactttcaaaaacttgcaattttggccccctaagtatcaaaacaacaattttggccccctaagatttagcctctttgcat 47614289  T
Q  275 ctttgatccttttggccaattttgact 301  Q
    ||||| | |||||||  ||||||||||    
T  47614290 ctttggtgcttttggttaattttgact 47614316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 18388980 - 18388947
Alignment:
Q  194 ttaagttttaaaaaattgtgattttggtccccta 227  Q
    ||||||||||||| ||||||||||||||||||||    
T  18388980 ttaagttttaaaatattgtgattttggtccccta 18388947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 47610676 - 47610551
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    |||||||||||||||| | ||| ||| ||||| |||  ||||||| |||||| |||| ||| | |||||||   ||| ||||||||||  ||  |||||     
T  47610676 aagtgcacttttccccctctaactttcaaaaacttgcaattttggccccctaagtaccaaaaccacaatttagcccccctaagatttagccccattgcaa 47610577  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    ||||| |||||||| |||||||||||    
T  47610576 ctttggtccttttgaccaattttgac 47610551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 47615608 - 47615547
Alignment:
Q  241 caattttagccctctaagatttaacca-tttgcatctttgatccttttggccaattttgact 301  Q
    ||||||| |||| |||||||||| ||  |||||||||||| ||||||||| |||||||||||    
T  47615608 caattttggccccctaagatttagcccctttgcatctttggtccttttggtcaattttgact 47615547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 301
Target Start/End: Complemental strand, 52105709 - 52105637
Alignment:
Q  230 tacaaaacctacaattttagccctctaagatttaacca-tttgcatctttgatccttttggccaattttgact 301  Q
    ||||||| ||||||||||| | | |||| ||||| ||  ||| |||||||| |||||||||||||||||||||    
T  52105709 tacaaaagctacaattttaactccctaaaatttagcctctttacatctttggtccttttggccaattttgact 52105637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 9e-25; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 1824174 - 1824048
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcat 274  Q
    ||||||| |||||||| | ||| ||| ||||| |||  |||||||||||||| |||||||| |||||||||| |||| |||||||||| ||| |||||||    
T  1824174 aagtgcatttttccccctctaactttcaaaaacttgcaattttggtcccctaagtacaaaaactacaattttggccccctaagatttagccattttgcat 1824075  T
Q  275 ctttgatccttttggccaattttgact 301  Q
    ||||| ||||||||| |||||||||||    
T  1824074 ctttggtccttttggtcaattttgact 1824048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 1858619 - 1858493
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcat 274  Q
    ||||||| |||||||| | ||| ||| ||||| |||  |||||||||||||| |||||||| |||||||||| |||| |||||||||| ||| |||||||    
T  1858619 aagtgcatttttccccctctaactttcaaaaacttgcaattttggtcccctaagtacaaaaactacaattttggccccctaagatttagccattttgcat 1858520  T
Q  275 ctttgatccttttggccaattttgact 301  Q
    ||||| ||||||||| |||||||||||    
T  1858519 ctttggtccttttggtcaattttgact 1858493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 8389785 - 8389660
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaa-ccatttgcat 274  Q
    ||||||||||||||||| |||||||| ||||| |||  ||||||||||| || |||||||| |||||||||||| || ||||||||||| || ||| |||    
T  8389785 aagtgcacttttcccctcttaagtttcaaaaagttgcaattttggtcccttatgtacaaaaactacaattttagtcccctaagatttaacccctttacat 8389686  T
Q  275 ctttgatccttttggccaattttgac 300  Q
     |||| ||||||||  ||||||||||    
T  8389685 ttttggtccttttgaacaattttgac 8389660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 224 - 300
Target Start/End: Complemental strand, 30336549 - 30336472
Alignment:
Q  224 cctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcatctttgatccttttggccaattttgac 300  Q
    |||| |||||||| ||||||||||| |||||||||||||| ||| |||||||||||| ||||||||| ||||||||||    
T  30336549 cctaagtacaaaaactacaattttaaccctctaagatttagccattttgcatctttggtccttttggtcaattttgac 30336472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 176 - 301
Target Start/End: Original strand, 10006349 - 10006475
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    |||||||||||||||| | ||| ||| ||||| |||  ||||||| |||||| |||  ||| | |||||||| |||| ||||||||||  || |||||||    
T  10006349 aagtgcacttttccccctctaactttcaaaaacttgcaattttggccccctaagtatcaaaacaacaattttggccccctaagatttagcccctttgcat 10006448  T
Q  275 ctttgatccttttggccaattttgact 301  Q
    ||||| ||||||||| |||||||||||    
T  10006449 ctttggtccttttggtcaattttgact 10006475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 214 - 330
Target Start/End: Complemental strand, 18488320 - 18488199
Alignment:
Q  214 attttggtcccctacgtacaaaacctacaattttagccctctaagatttaa-ccatttgcatctttgatccttttggccaattttgac----taatccct 308  Q
    ||||| ||||||||  ||||||| |||||||||| |||||||||||| ||| || |||||||||||| |||||||| ||| |||||||     ||| |||    
T  18488320 attttagtcccctatatacaaaaactacaattttggccctctaagatataacccctttgcatctttggtccttttgaccagttttgaccagtcaatgcct 18488221  T
Q  309 acatggcatgccacatgtgtaa 330  Q
    || |||||||||| ||||||||    
T  18488220 acgtggcatgccaaatgtgtaa 18488199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 176 - 299
Target Start/End: Original strand, 22220393 - 22220517
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    |||||||||||||||| | ||| ||| ||| | |||  ||||||  |||||| ||| |||| |||||||||| |||| ||||||||||  ||||||||||    
T  22220393 aagtgcacttttccccctctaactttaaaatacttgcaattttgaccccctatgtataaaaactacaattttggccccctaagatttagcccatttgcat 22220492  T
Q  275 ctttgatccttttggccaattttga 299  Q
    ||||| ||||||||  |||||||||    
T  22220493 ctttggtccttttgatcaattttga 22220517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 29968432 - 29968308
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaaccat-ttgcat 274  Q
    |||||||||||||||| || || ||||||||| |||  ||||||| |||||| |||||||| |||||||| | | || |||||||||| ||   |||||     
T  29968432 aagtgcacttttccccctt-aacttttaaaaacttgcaattttggccccctaagtacaaaaactacaattctggtcccctaagatttagccccattgcaa 29968334  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    |||| ||| |||||||||||||||||    
T  29968333 ctttaatcattttggccaattttgac 29968308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 30570351 - 30570227
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaaccattt-gcat 274  Q
    |||||||| ||| ||| | ||||||||||||| |||  |||||| |||  || ||||||||  || |||||| |||| |||||||||| || ||| ||||    
T  30570351 aagtgcaccttttcccctctaagttttaaaaagttgcaattttgatcct-tatgtacaaaaattagaattttggccccctaagatttagcccttttgcat 30570253  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    ||||| ||||||||||||||||||||    
T  30570252 ctttggtccttttggccaattttgac 30570227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 40471242 - 40471118
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacc-atttgcat 274  Q
    |||||||||||||||| ||||| ||| ||||| ||   ||||||||||  ||  ||||||| |||||||||||||||  ||||||||||||  |||| ||    
T  40471242 aagtgcacttttccccctttaactttaaaaaacttacaattttggtcca-taaatacaaaaactacaattttagccccttaagatttaacctctttgtat 40471144  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    ||||| || |||||| ||||||||||    
T  40471143 ctttggtcattttggtcaattttgac 40471118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 300
Target Start/End: Original strand, 29043440 - 29043528
Alignment:
Q  213 gattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcatctttgatccttttggccaattttgac 300  Q
    |||||||  |||||| |||||||| ||||||||||  ||||||||||||||  || |||| ||||||||||||||| | ||||||||||    
T  29043440 gattttgaccccctatgtacaaaaactacaattttttccctctaagatttagcccctttgtatctttgatccttttagacaattttgac 29043528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 214 - 300
Target Start/End: Original strand, 18978062 - 18978149
Alignment:
Q  214 attttggtcccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcatctttgatccttttggccaattttgac 300  Q
    ||||||| |||||| |||||||| |||||||||| ||||  ||||||||| ||  |||||| |||||||||||||  |||||||||||    
T  18978062 attttggccccctaagtacaaaaactacaattttggccccttaagatttagcccctttgcaactttgatccttttttccaattttgac 18978149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 274
Target Start/End: Complemental strand, 24361266 - 24361191
Alignment:
Q  199 ttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaaccatttgcat 274  Q
    ||||||||||||  ||||||||||| ||| ||||||||  ||||||||||  ||| ||||||||| ||||||||||    
T  24361266 ttttaaaaaatttcgattttggtcctctatgtacaaaaattacaattttaatcctttaagatttagccatttgcat 24361191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 10007859 - 10007733
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    ||||||||||||||||  |||| ||| ||||| |||  ||||||| |||||| ||| | || | |||||||| | || ||||||||||  || |||||||    
T  10007859 aagtgcacttttccccccttaactttcaaaaacttgcaattttggccccctaagtatagaaaccacaattttggtcccctaagatttagcccctttgcat 10007760  T
Q  275 ctttgatccttttggccaattttgact 301  Q
    ||||| ||||||| | |||||||||||    
T  10007759 ctttggtccttttcgtcaattttgact 10007733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 196 - 299
Target Start/End: Original strand, 17844302 - 17844403
Alignment:
Q  196 aagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcatctttgatccttttggccaat 294  Q
    |||||| ||||| |||||||||||||||  || |||||||| |||||||||| | || |||| ||||||||  |||  ||||||| ||||||||||||||    
T  17844302 aagtttcaaaaagttgtgattttggtcc--tatgtacaaaaactacaattttggtcc-ctaacatttaacctctttatatctttggtccttttggccaat 17844398  T
Q  295 tttga 299  Q
    |||||    
T  17844399 tttga 17844403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 18979216 - 18979091
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacc-atttgcat 274  Q
    ||||||||||||||||   ||| ||| || || |||  ||||||| ||||||  || |||| |||||||||| ||||  || |||||| || |||||||     
T  18979216 aagtgcacttttccccccctaactttcaacaacttgcaattttggccccctaaatataaaaactacaattttggccccttatgatttagcccatttgcaa 18979117  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    ||||||||||||| ||||||||||||    
T  18979116 ctttgatcctttttgccaattttgac 18979091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 30335644 - 30335769
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcat 274  Q
    ||||||| |||||| |  |||| ||||||||| |||  |||||||  | ||| ||||||||  |||||||||| ||| |||||||||| ||  |||||||    
T  30335644 aagtgcatttttccacccttaacttttaaaaacttgcaattttggctcgctaagtacaaaaattacaattttaaccccctaagatttagcccctttgcat 30335743  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    ||||| ||||||||  ||||||||||    
T  30335744 ctttggtccttttgttcaattttgac 30335769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 301
Target Start/End: Original strand, 5514024 - 5514112
Alignment:
Q  214 attttggtcccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcatctttgatccttttggccaattttgact 301  Q
    ||||||| |||||| |||||||| ||||||||||  ||| |||| ||||| ||  |||||||||||| ||||||||  |||||||||||    
T  5514024 attttggccccctaagtacaaaaactacaattttgcccccctaaaatttagcccctttgcatctttggtccttttgatcaattttgact 5514112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 300
Target Start/End: Original strand, 18970953 - 18971040
Alignment:
Q  214 attttggtcccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcatctttgatccttttggccaattttgac 300  Q
    ||||||| |||||| |||||||| ||||||||||  |||   |||||||||||  |||||| ||||| ||||||| ||||||||||||    
T  18970953 attttggccccctaagtacaaaaactacaattttgacccctgaagatttaacccctttgcaactttggtcctttttgccaattttgac 18971040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 300
Target Start/End: Original strand, 24122933 - 24123012
Alignment:
Q  222 cccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcatctttgatccttttggccaattttgac 300  Q
    |||||| |||||||| ||| |||||||| || |||||||||| |   |||||||||||| ||||||||| ||||||||||    
T  24122933 cccctaagtacaaaaactataattttagtcccctaagatttagcttctttgcatctttggtccttttggtcaattttgac 24123012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 301
Target Start/End: Complemental strand, 34625241 - 34625170
Alignment:
Q  231 acaaaacctacaattttagccctctaagatttaaccattt-gcatctttgatccttttggccaattttgact 301  Q
    |||||| ||||||||||||||| ||| |||||| ||  || ||| ||||||||||||||| |||||||||||    
T  34625241 acaaaaactacaattttagccccctatgatttaccctcttcgcaactttgatccttttggtcaattttgact 34625170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 42982753 - 42982682
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaatttt 247  Q
    |||||||||||||| | ||||||||||||||| |||| ||||||| |||||    |||||| ||||||||||    
T  42982753 aagtgcacttttccacctttaagttttaaaaagttgtaattttggccccctgtaaacaaaaactacaatttt 42982682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 300
Target Start/End: Original strand, 43661308 - 43661395
Alignment:
Q  214 attttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcatctttgatccttttggccaattttgac 300  Q
    ||||||||||| || |||||||| ||| |||||| |||| ||||||||||  || |||||||||||| | ||||||| ||| ||||||    
T  43661308 attttggtcccttatgtacaaaaactataattttggccccctaagatttagcccctttgcatctttggttcttttggtcaactttgac 43661395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 300
Target Start/End: Complemental strand, 43661921 - 43661794
Alignment:
Q  174 tgaagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattt-aaccatttgc 272  Q
    |||||||||||||||| |  |||| ||| ||||| |||  |||||  ||| ||| |||||||| ||| |||||| |||| |||||||||   ||| ||||    
T  43661921 tgaagtgcacttttccacccttaactttcaaaaagttgcaattttaatcctctatgtacaaaaactaaaattttggccccctaagatttcgcccaattgc 43661822  T
Q  273 atctttgatccttttggccaattttgac 300  Q
    ||||||| ||||||||  ||||||||||    
T  43661821 atctttggtccttttgatcaattttgac 43661794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 300
Target Start/End: Complemental strand, 2379991 - 2379895
Alignment:
Q  203 aaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaac-catttgcatctttgatccttttggccaattttgac 300  Q
    ||||| |||| ||||||| |||||| |||| |||| ||||||||| ||||  ||||||||| | |||||||||||||| | ||||||| ||||||||||    
T  2379991 aaaaagttgtaattttgg-cccctatgtacgaaac-tacaattttggccccttaagatttagctcatttgcatctttggttcttttggtcaattttgac 2379895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 300
Target Start/End: Original strand, 8388490 - 8388592
Alignment:
Q  199 ttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcatctttgatccttttggccaatttt 297  Q
    ||||||||| |||  ||||| | |||||| |||||||| ||| |||||| |||| |||||||||| ||  ||||| | |||| |||||||| ||||||||    
T  8388490 ttttaaaaagttgcaattttagccccctatgtacaaaaactataattttggccccctaagatttagcccctttgcgtttttggtccttttgcccaatttt 8388589  T
Q  298 gac 300  Q
    |||    
T  8388590 gac 8388592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 22221460 - 22221334
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcat 274  Q
    |||||||||||||| |   ||| ||| ||||| |||  ||||||  |||||| |||  ||| ||||||||||  ||| |||||||||| ||  ||| |||    
T  22221460 aagtgcacttttccacccctaactttcaaaaacttgcaattttgaccccctaagtattaaaactacaattttgaccccctaagatttagcccctttacat 22221361  T
Q  275 ctttgatccttttggccaattttgact 301  Q
    ||||||||||||| |||||||||||||    
T  22221360 ctttgatccttttagccaattttgact 22221334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 22227802 - 22227676
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcat 274  Q
    |||||||||||||| |   ||| ||| ||||| |||  ||||||  |||||| |||  ||| ||||||||||  ||| |||||||||| ||  ||| |||    
T  22227802 aagtgcacttttccacccctaactttcaaaaacttgcaattttgaccccctaagtattaaaactacaattttgaccccctaagatttagcccctttacat 22227703  T
Q  275 ctttgatccttttggccaattttgact 301  Q
    ||||||||||||| |||||||||||||    
T  22227702 ctttgatccttttagccaattttgact 22227676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 300
Target Start/End: Complemental strand, 24123931 - 24123869
Alignment:
Q  239 tacaattttagccctctaagatttaacca-tttgcatctttgatccttttggccaattttgac 300  Q
    |||||||||||||  |||||||||| ||  |||||||||||| ||||||||| ||||||||||    
T  24123931 tacaattttagcctcctaagatttagcccctttgcatctttggtccttttggtcaattttgac 24123869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 299
Target Start/End: Original strand, 1823557 - 1823682
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacc-atttgcat 274  Q
    ||||| |||||| |||  |||| ||||||||| |||  ||||||  || ||| |||||||| |||||||||  | || |||||||||| || ||||||||    
T  1823557 aagtgtactttttcccccttaacttttaaaaacttgcaattttgaccctctaagtacaaaaactacaatttcggtcccctaagatttagcccatttgcat 1823656  T
Q  275 cttt-gatccttttggccaattttga 299  Q
     ||| | |||||||||||||||||||    
T  1823657 tttttggtccttttggccaattttga 1823682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 299
Target Start/End: Original strand, 1858002 - 1858127
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacc-atttgcat 274  Q
    ||||| |||||| |||  |||| ||||||||| |||  ||||||  || ||| |||||||| |||||||||  | || |||||||||| || ||||||||    
T  1858002 aagtgtactttttcccccttaacttttaaaaacttgcaattttgaccctctaagtacaaaaactacaatttcggtcccctaagatttagcccatttgcat 1858101  T
Q  275 cttt-gatccttttggccaattttga 299  Q
     ||| | |||||||||||||||||||    
T  1858102 tttttggtccttttggccaattttga 1858127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 2374852 - 2374819
Alignment:
Q  194 ttaagttttaaaaaattgtgattttggtccccta 227  Q
    |||| |||||||||||||||||||||||||||||    
T  2374852 ttaacttttaaaaaattgtgattttggtccccta 2374819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 11282013 - 11282138
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaa-ccatttgcat 274  Q
    |||||||||||| |||  |||| ||||||||| |||  ||||||| ||||||  |||||||   ||||||||  ||| ||||||||||| || ||||||     
T  11282013 aagtgcactttttcccccttaacttttaaaaagttgcaattttggccccctatatacaaaaatgacaattttgaccccctaagatttaacccctttgcaa 11282112  T
Q  275 ctttgatccttttggccaattttgac 300  Q
     ||||||| |||||  ||||||||||    
T  11282113 ttttgatctttttgatcaattttgac 11282138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 3207988 - 3208032
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttgg 220  Q
    ||||||| ||||| ||| |||||||||||||| ||||||||||||    
T  3207988 aagtgcatttttcacctcttaagttttaaaaagttgtgattttgg 3208032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 9e-25; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 176 - 301
Target Start/End: Original strand, 18371429 - 18371555
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaac-catttgcat 274  Q
    |||||||||||||||||  ||| ||| ||||| |||  ||||||| ||| || |||||||| |||||||||| |||| |||||||||| | |||||||||    
T  18371429 aagtgcacttttcccctcctaactttcaaaaacttgcaattttggccccttaagtacaaaaactacaattttggccccctaagatttagcacatttgcat 18371528  T
Q  275 ctttgatccttttggccaattttgact 301  Q
    ||||||||||||||| |||||||||||    
T  18371529 ctttgatccttttggtcaattttgact 18371555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 42886382 - 42886257
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    ||||||||||||| |||  ||| ||| ||||| |||  ||||||  ||||||  ||||||| ||||||||||||||| ||||||||||  ||||||||||    
T  42886382 aagtgcacttttctcctcctaactttcaaaaatttgcaattttgaccccctaaatacaaaaactacaattttagccccctaagatttagcccatttgcat 42886283  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    |||||||| |||||| ||||||||||    
T  42886282 ctttgatcattttggtcaattttgac 42886257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 194 - 301
Target Start/End: Original strand, 22629509 - 22629617
Alignment:
Q  194 ttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcatctttgatccttttggcca 292  Q
    |||| ||| ||||| |||| ||||||| | |||| |||||||| |||||||||| |||| |||||||||| ||  |||||||||||| ||||||||| ||    
T  22629509 ttaattttcaaaaacttgtaattttggcctcctaagtacaaaaactacaattttggccccctaagatttagcccctttgcatctttggtccttttggtca 22629608  T
Q  293 attttgact 301  Q
    |||||||||    
T  22629609 attttgact 22629617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 214 - 301
Target Start/End: Complemental strand, 18372515 - 18372427
Alignment:
Q  214 attttggtcccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcatctttgatccttttggccaattttgact 301  Q
    ||||||| |||||| |||||||| |||||||||| |||| |||||||||| ||  |||| ||||||| ||||||||| |||||||||||    
T  18372515 attttggccccctaagtacaaaaactacaattttggccccctaagatttagcccctttgtatctttggtccttttggtcaattttgact 18372427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 300
Target Start/End: Complemental strand, 34352844 - 34352757
Alignment:
Q  214 attttggtcccctacgtacaaaacctacaattttagccctctaagatttaaccat-ttgcatctttgatccttttggccaattttgac 300  Q
    ||||||||||| || ||||| || ||| |||||| |||||||||||||||||| | ||||| |||| ||| |||||||||||||||||    
T  34352844 attttggtcccttaagtacataaactataattttggccctctaagatttaaccttattgcaactttaatcattttggccaattttgac 34352757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 176 - 301
Target Start/End: Original strand, 7500460 - 7500585
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcat 274  Q
    |||||||||||||||| || || ||| ||||| |||  |||||| ||| ||| ||| | || | |||||||| |||| |||||||||| ||  |||||||    
T  7500460 aagtgcacttttccccctt-aactttcaaaaacttgcaattttgatcctctaagtatagaaaccacaattttggccccctaagatttagcccctttgcat 7500558  T
Q  275 ctttgatccttttggccaattttgact 301  Q
    ||||||||||||||| |||||||||||    
T  7500559 ctttgatccttttggtcaattttgact 7500585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 22630548 - 22630422
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacc-atttgcat 274  Q
    |||||||||||||||    ||| ||| ||||| |||  ||||||| ||||||  ||||||| ||||||||||||||| |||||||| | ||  |||| ||    
T  22630548 aagtgcacttttccctccataactttcaaaaacttgcaattttggccccctaattacaaaaactacaattttagccccctaagattcagcctctttgtat 22630449  T
Q  275 ctttgatccttttggccaattttgact 301  Q
    ||||| ||||||||| |||||||||||    
T  22630448 ctttggtccttttggtcaattttgact 22630422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 162 - 300
Target Start/End: Original strand, 127328 - 127465
Alignment:
Q  162 taaatcttagattgaagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatt 261  Q
    ||||||||||  | ||||||||||||||||  | || ||| ||||| |||  |||||||||||||| |||| ||| | ||||||| ||||| ||||||||    
T  127328 taaatcttaggctaaagtgcacttttcccccct-aactttcaaaaacttgcaattttggtcccctaagtaccaaaaccacaattt-agccccctaagatt 127425  T
Q  262 taacc-atttgcatctttgatccttttggccaattttgac 300  Q
    || || | ||||| ||||| |||||||| |||||||||||    
T  127426 tagcccaattgcaactttggtccttttgaccaattttgac 127465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 7501948 - 7501822
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcat 274  Q
    |||||||||||||||| | ||| ||| ||||| |||  ||||||| |||||| |||  ||| | |||||||| ||||  |||||| || ||  |||||||    
T  7501948 aagtgcacttttccccctctaactttcaaaaacttgcaattttggccccctaagtatcaaaacaacaattttggccccttaagatgtagcccctttgcat 7501849  T
Q  275 ctttgatccttttggccaattttgact 301  Q
    ||||| ||||||||| |||||||||||    
T  7501848 ctttggtccttttggtcaattttgact 7501822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 241 - 297
Target Start/End: Complemental strand, 21508464 - 21508407
Alignment:
Q  241 caattttagccctctaagatttaacca-tttgcatctttgatccttttggccaatttt 297  Q
    ||||||| ||||||||||||||| ||| ||||||||||||||| |||||| |||||||    
T  21508464 caattttggccctctaagatttagccaatttgcatctttgatctttttggtcaatttt 21508407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 298
Target Start/End: Original strand, 21505421 - 21505542
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcat 274  Q
    |||||||||||||||| |  || ||| ||||| ||| |||||||| |||| |  ||||||| ||||||||||  |||  ||||||||| ||  |||||||    
T  21505421 aagtgcacttttccccct--aactttcaaaaagttgcgattttggcccccgatatacaaaaactacaattttgaccccataagatttagcccctttgcat 21505518  T
Q  275 ctttgatccttttggccaattttg 298  Q
    ||||| ||||||||| ||||||||    
T  21505519 ctttggtccttttggacaattttg 21505542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 300
Target Start/End: Original strand, 769508 - 769543
Alignment:
Q  265 ccatttgcatctttgatccttttggccaattttgac 300  Q
    |||||||||||||||||||||||| |||||||||||    
T  769508 ccatttgcatctttgatccttttgcccaattttgac 769543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 300
Target Start/End: Original strand, 31659674 - 31659753
Alignment:
Q  222 cccctacgtacaaaacctacaattttagccctctaagatttaaccat-ttgcatctttgatccttttggccaattttgac 300  Q
    |||||| |||||||| |||||||||| |||| |||||||||| ||   |||||  |||||||||||||| ||||||||||    
T  31659674 cccctaagtacaaaaactacaattttggccccctaagatttagccccattgcaaatttgatccttttggtcaattttgac 31659753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 297
Target Start/End: Complemental strand, 43900583 - 43900463
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaac-catttgcat 274  Q
    ||||||||||||| | || ||| ||||||||| |||| |||||||| |||||  || |||| ||||| |||| |||| | || ||||| | |||||||||    
T  43900583 aagtgcacttttctc-ttctaacttttaaaaatttgtaattttggttccctaaatataaaaactacagtttt-gcccccaaaaatttatctcatttgcat 43900486  T
Q  275 ctttgatccttttggccaatttt 297  Q
    ||||||||||||||  |||||||    
T  43900485 ctttgatccttttgatcaatttt 43900463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 301
Target Start/End: Original strand, 46482602 - 46482728
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaac-catttgcat 274  Q
    ||||||| ||||| |||  ||| ||| ||||| |||| | ||||  |||||| |||||||| ||| |||||||  || |||||||||| | | |||||||    
T  46482602 aagtgcatttttctcctcctaattttcaaaaatttgtaaatttgaccccctatgtacaaaaactataattttaatcccctaagatttatctcctttgcat 46482701  T
Q  275 ctttgatccttttggccaattttgact 301  Q
     ||| |||||||||| |||||||||||    
T  46482702 tttttatccttttggtcaattttgact 46482728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 297
Target Start/End: Original strand, 14998042 - 14998107
Alignment:
Q  233 aaaacctacaattttagccctctaagatttaacca-tttgcatctttgatccttttggccaatttt 297  Q
    ||||| ||||||||| |||| |||||||||| ||  |||||||||||| ||||||||| |||||||    
T  14998042 aaaacttacaattttggccccctaagatttagcccctttgcatctttggtccttttggtcaatttt 14998107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 51684371 - 51684496
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    ||||||||||||||||  |||| ||||||||| |||  ||||||| |||||| ||| |||| |||||||||| |||| ||||||||||  || |||||||    
T  51684371 aagtgcacttttccccccttaacttttaaaaagttgcaattttggccccctatgtataaaaactacaattttggccccctaagatttagcccctttgcat 51684470  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    ||||| ||||||||||||||||||||    
T  51684471 ctttggtccttttggccaattttgac 51684496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 176 - 330
Target Start/End: Original strand, 39151936 - 39152095
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaa-ccatttgcat 274  Q
    ||||||| |||| |||  |||||||| ||||| |||| ||||||| |||||| |||||||| ||||||||||  | || |||||||||| || |||||||    
T  39151936 aagtgcattttttcccccttaagtttcaaaaacttgtaattttggccccctatgtacaaaaactacaattttgactctttaagatttaacccctttgcat 39152035  T
Q  275 ctttgatccttttggccaattttgac----taatccctacatggcatgccacatgtgtaa 330  Q
    ||||| ||||||||| ||||||||||     ||| ||||| |||||||||||||||||||    
T  39152036 ctttggtccttttggtcaattttgaccagtcaatgcctacgtggcatgccacatgtgtaa 39152095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 176 - 330
Target Start/End: Complemental strand, 39153212 - 39153053
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaa-ccatttgcat 274  Q
    |||||||||||| |||  |||||||| ||||| |||  ||||||| ||| || |||||||| ||||||||||  ||||||||||||||| || |||||||    
T  39153212 aagtgcactttttcccccttaagtttcaaaaacttgcaattttggccccttatgtacaaaaactacaattttgaccctctaagatttaacccctttgcat 39153113  T
Q  275 ctttgatccttttggccaattttgac----taatccctacatggcatgccacatgtgtaa 330  Q
    ||||| ||||||||| ||||||||||     ||| ||||| ||||||||||| |||||||    
T  39153112 ctttggtccttttggtcaattttgaccagtcaatgcctacgtggcatgccacgtgtgtaa 39153053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 11437295 - 11437170
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaa-ccatttgcat 274  Q
    |||||||||||| |||  |||| ||| ||||| |||  ||||||||||| || |||||||| |||||||||| |||| ||||||||||| || ||| |||    
T  11437295 aagtgcactttttcccccttaactttcaaaaacttgcaattttggtcccttaagtacaaaaactacaattttggccccctaagatttaacccttttacat 11437196  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    ||||||||||||||| ||||||||||    
T  11437195 ctttgatccttttggtcaattttgac 11437170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 176 - 297
Target Start/End: Complemental strand, 51685861 - 51685739
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    |||||||||||||||| | ||| ||| ||||| ||| |||||||| || ||| |||||||| ||||||||||  ||| ||||||||||  || |||||||    
T  51685861 aagtgcacttttccccctctaactttcaaaaagttgcgattttggccctctatgtacaaaaactacaattttgaccccctaagatttagcccctttgcat 51685762  T
Q  275 ctttgatccttttggccaatttt 297  Q
    ||||| |||||||||||||||||    
T  51685761 ctttggtccttttggccaatttt 51685739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 222 - 301
Target Start/End: Original strand, 43058836 - 43058916
Alignment:
Q  222 cccctacgtacaaaacctacaattttagccctctaagattta-accatttgcatctttgatccttttggccaattttgact 301  Q
    |||||| |||||||| ||||||||||||||||||||||||||  || ||| |||||||||||||||||| |||||||||||    
T  43058836 cccctaagtacaaaaactacaattttagccctctaagatttagcccctttacatctttgatccttttggtcaattttgact 43058916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 39222570 - 39222443
Alignment:
Q  176 aagtgcactttt-ccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaaga-tttaaccatttgca 273  Q
    |||||||||||| |||| ||||| ||| ||||| |||  ||||||| |||||| ||| |||| ||||||| |||||||||||||| |||  |||||||||    
T  39222570 aagtgcacttttaccccctttaactttcaaaaacttgcaattttggccccctaagtataaaaactacaatgttagccctctaagattttgcccatttgca 39222471  T
Q  274 tctttgatccttttggccaattttgact 301  Q
    |||||| || |||||| |||||||||||    
T  39222470 tctttggtctttttgggcaattttgact 39222443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 176 - 330
Target Start/End: Original strand, 45148586 - 45148744
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcat 274  Q
    |||||||||||| |||  |||| ||| ||||| |||  ||||||| |||||| ||| ||||| |||||||||  ||| |||||||||||||  |||||||    
T  45148586 aagtgcactttttcccgcttaactttcaaaaacttgcaattttggccccctaagtaaaaaac-tacaattttgcccccctaagatttaacccctttgcat 45148684  T
Q  275 ctttgatccttttggccaattttgac----taatccctacatggcatgccacatgtgtaa 330  Q
    ||||| ||||||||||||||||||||     ||  ||||| |||||||||||||||||||    
T  45148685 ctttggtccttttggccaattttgaccggtcaaagcctacgtggcatgccacatgtgtaa 45148744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 195 - 300
Target Start/End: Complemental strand, 45157286 - 45157180
Alignment:
Q  195 taagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaa-ccatttgcatctttgatccttttggccaa 293  Q
    ||||||| ||||| |||  ||||||| |||||| |||||||| ||||||||||  |||| |||||||||| || |||||||||||| ||||||||| |||    
T  45157286 taagtttcaaaaacttgcaattttggccccctatgtacaaaaactacaattttgaccctttaagatttaacccctttgcatctttggtccttttggtcaa 45157187  T
Q  294 ttttgac 300  Q
    |||||||    
T  45157186 ttttgac 45157180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 11436047 - 11436172
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacc-atttgcat 274  Q
    |||||||||||||||| ||||| ||| ||||| |||  ||||||| |   || ||| |||| |||||||||| |||| ||||||||||||| ||||||||    
T  11436047 aagtgcacttttccccctttaactttcaaaaacttgcaattttggccttttaagtataaaaactacaattttggccccctaagatttaacccatttgcat 11436146  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    ||||| | ||||||| ||||||||||    
T  11436147 ctttggttcttttggtcaattttgac 11436172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 229 - 301
Target Start/End: Original strand, 30248170 - 30248242
Alignment:
Q  229 gtacaaaacctacaattttagccctctaagatttaac-catttgcatctttgatccttttggccaattttgact 301  Q
    |||||||| ||||||||||| |||||||||||||||| | ||||||||||||||| ||||||||||||||||||    
T  30248170 gtacaaaaactacaatttta-ccctctaagatttaactcctttgcatctttgatcattttggccaattttgact 30248242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 301
Target Start/End: Original strand, 50680374 - 50680462
Alignment:
Q  214 attttggtcccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcatctttgatccttttggccaattttgact 301  Q
    ||||||| |||||| ||| |||| ||| |||||||| || |||||||||||||  |||||||||||||||||||||| |||||||||||    
T  50680374 attttggccccctaagtataaaaactataattttagtcccctaagatttaacccctttgcatctttgatccttttggtcaattttgact 50680462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 214 - 300
Target Start/End: Complemental strand, 44412024 - 44411937
Alignment:
Q  214 attttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcatctttgatccttttggccaattttgac 300  Q
    ||||| |||||||| |||||||| ||||||||||| |||| |||||||||  || |||||| ||||||||||||| ||||||||||||    
T  44412024 attttagtcccctaagtacaaaaactacaattttacccctttaagatttaggccctttgcaactttgatcctttttgccaattttgac 44411937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 263
Target Start/End: Complemental strand, 35067098 - 35067011
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta 263  Q
    ||||||||||||||||  |||||||| ||||| ||| |||||||| |||||| | |||||| |||||||||| |||| |||| |||||    
T  35067098 aagtgcacttttccccccttaagtttcaaaaagttgcgattttggccccctatgaacaaaaactacaattttggccccctaatattta 35067011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 24422805 - 24422930
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    |||||||||||| |||  |||| ||| ||||| |||  ||||||  |||||| |||||||| |||||||||| |||| ||||||||||  ||  |||||     
T  24422805 aagtgcacttttacccccttaactttcaaaaacttgcaattttgaccccctaagtacaaaaactacaattttggccccctaagatttagccccattgcaa 24422904  T
Q  275 ctttgatccttttggccaattttgac 300  Q
     |||||||||||||| ||||||||||    
T  24422905 atttgatccttttggtcaattttgac 24422930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 24426171 - 24426046
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    ||||||||||| |||| | ||| ||| ||||| |||  ||||||| |||||| |||||||| |||||||||||| || ||||||||||  ||  |||||     
T  24426171 aagtgcactttcccccctctaactttcaaaaacttgcaattttggccccctaagtacaaaaactacaattttagtcccctaagatttagccccattgcaa 24426072  T
Q  275 ctttgatccttttggccaattttgac 300  Q
     |||||| ||||||| ||||||||||    
T  24426071 atttgatacttttggtcaattttgac 24426046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 300
Target Start/End: Original strand, 45156046 - 45156179
Alignment:
Q  168 ttagattgaagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacc- 266  Q
    ||||||| |||| ||||||||| |  |||||||| ||||| ||   ||||||  |  ||| |||||||| ||||||||||| |||||||||||||||||     
T  45156046 ttagattaaagttcacttttcctcccttaagtttcaaaaacttacaattttgaccttctatgtacaaaaactacaattttaaccctctaagatttaacct 45156145  T
Q  267 atttgcatctttgatccttttggccaattttgac 300  Q
     |||| ||||||| || |||||| ||||||||||    
T  45156146 ctttgtatctttggtctttttggtcaattttgac 45156179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 52276259 - 52276134
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    ||||||||||| |||||| ||| ||| ||||| |||| ||||||| |||||| |||||||| ||| || ||||| || ||||||||||  ||  |||||     
T  52276259 aagtgcactttcccccttctaactttcaaaaatttgtaattttggccccctaagtacaaaaactataaatttagtcccctaagatttagccccattgcaa 52276160  T
Q  275 ctttgatccttttggccaattttgac 300  Q
     |||||||||||||  ||||||||||    
T  52276159 atttgatccttttgatcaattttgac 52276134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 163 - 300
Target Start/End: Complemental strand, 45150079 - 45149941
Alignment:
Q  163 aaatcttagattgaagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctc-taagatt 261  Q
    |||| |||| || ||||||||||||||||  | || ||| ||||| |||  ||||||| ||| || |||||||| | ||||||||  ||| | |||||||    
T  45150079 aaattttaggttaaagtgcacttttcccccct-aactttcaaaaacttgcaattttggccccttaagtacaaaaacaacaattttgccccccctaagatt 45149981  T
Q  262 taacca-tttgcatctttgatccttttggccaattttgac 300  Q
    || ||  |||||||||||||||||||||||||||||||||    
T  45149980 tagcccctttgcatctttgatccttttggccaattttgac 45149941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 40384729 - 40384855
Alignment:
Q  176 aagtgcacttttcccct-tttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgca 273  Q
    ||||||||||||  ||| ||||| ||| ||||| |||  ||||| ||| |||| |||||||| ||||||||||   || |||| ||||| ||  ||||||    
T  40384729 aagtgcacttttttcctctttaattttcaaaaagttgcaattttagtctcctatgtacaaaaactacaattttgatcccctaaaatttagcctctttgca 40384828  T
Q  274 tctttgatccttttggccaattttgac 300  Q
    |||||| ||||||||||||||||||||    
T  40384829 tctttggtccttttggccaattttgac 40384855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 43060102 - 43059976
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaac-catttgcat 274  Q
    ||||| ||||| |||| | ||| ||| ||||| |||  ||||||  ||| || |||||||| ||||||||||  |||  ||||||||| | |||||||||    
T  43060102 aagtgtactttaccccctctaactttcaaaaatttgaaattttgaccccttaagtacaaaaactacaattttgaccccttaagatttagctcatttgcat 43060003  T
Q  275 ctttgatccttttggccaattttgact 301  Q
    ||||| ||||||||| |||||||||||    
T  43060002 ctttggtccttttggtcaattttgact 43059976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 300
Target Start/End: Original strand, 46066555 - 46066652
Alignment:
Q  203 aaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacc-atttgcatctttgatccttttggccaattttgac 300  Q
    ||||| ||| |||||| | ||| || |||||||| ||||||||||||||| |||||||||| || |||||||||| ||||| |||||  ||||||||||    
T  46066555 aaaaagttgcgattttagccccttatgtacaaaaactacaattttagccc-ctaagatttagccaatttgcatctctgatctttttgatcaattttgac 46066652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 301
Target Start/End: Original strand, 25652757 - 25652845
Alignment:
Q  214 attttggtcccctacgtacaaaacctacaattttagccctctaagatttaacc-atttgcatctttgatccttttggccaattttgact 301  Q
    |||||| |||| || ||||||||  || || ||| |||| |||||||||| || ||||||||||||| || ||||||||||||||||||    
T  25652757 attttgatcccttaagtacaaaaattataaatttggcccgctaagatttagcccatttgcatctttggtcattttggccaattttgact 25652845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 301
Target Start/End: Complemental strand, 30249600 - 30249460
Alignment:
Q  162 taaatcttagattgaagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatt 261  Q
    ||||||||||||| ||||||||| |||||    ||| ||| ||||| |||| |||||| ||   || |||||||| ||||||||||  |||  |||||||    
T  30249600 taaatcttagattaaagtgcactcttccctccgtaactttcaaaaagttgtaattttgatcttttatgtacaaaaactacaattttgaccccttaagatt 30249501  T
Q  262 taac-catttgcatctttgatccttttggccaattttgact 301  Q
    || | |||||| |||||||||| |||||  |||||||||||    
T  30249500 tagctcatttgtatctttgatctttttgatcaattttgact 30249460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 300
Target Start/End: Original strand, 44404493 - 44404572
Alignment:
Q  222 cccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcatctttgatccttttggccaattttgac 300  Q
    |||||| |||||||| ||| |||||| |||| |||| ||||| ||| |||||||||||| || |||||| ||||||||||    
T  44404493 cccctaagtacaaaaactataattttggccccctaaaatttagccaatttgcatctttggtcattttggtcaattttgac 44404572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 31084626 - 31084672
Alignment:
Q  181 cacttttccccttttaagttttaaaaaattgtgattttggtccccta 227  Q
    |||||||| ||| ||||||||||||| |||| |||||||||||||||    
T  31084626 cacttttcgcctcttaagttttaaaatattgcgattttggtccccta 31084672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 301
Target Start/End: Original strand, 31194111 - 31194184
Alignment:
Q  229 gtacaaaacctacaattttagccctctaagatttaaccattt-gcatctttgatccttttggccaattttgact 301  Q
    |||||||| ||| |||||| ||||| ||||||||| || ||| ||||||||| ||||||| ||||||| |||||    
T  31194111 gtacaaaaactaaaattttggccctttaagatttagcctttttgcatctttggtcctttttgccaattctgact 31194184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 297
Target Start/End: Original strand, 36612910 - 36612979
Alignment:
Q  229 gtacaaaacctacaattttagccctctaagattta-accatttgcatctttgatccttttggccaatttt 297  Q
    |||||||| ||||||||||| ||| ||||||||||  || |||||||||||| || |||||| |||||||    
T  36612910 gtacaaaaactacaattttaaccccctaagatttagtccctttgcatctttggtcattttggtcaatttt 36612979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 52274973 - 52275098
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacc-atttgcat 274  Q
    |||||||||||| |||   ||| ||| ||||| |||  ||||||  |||||| |||||||| |||||||||| | || |||||||||| ||   |||||     
T  52274973 aagtgcacttttacccccctaactttcaaaaacttgcaattttgaccccctaagtacaaaaactacaattttgggcccctaagatttagcctcattgcaa 52275072  T
Q  275 ctttgatccttttggccaattttgac 300  Q
     |||||||||||||| ||||||||||    
T  52275073 atttgatccttttggtcaattttgac 52275098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 264
Target Start/End: Original strand, 11190390 - 11190478
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaa 264  Q
    ||||||||||||| ||  |||| ||||||||| |||  |||||||| |||||  ||||||| || |||||||   ||||||||||||||    
T  11190390 aagtgcacttttcaccccttaaattttaaaaagttgcaattttggttccctatatacaaaaactgcaattttgatcctctaagatttaa 11190478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 268 - 304
Target Start/End: Original strand, 39221412 - 39221448
Alignment:
Q  268 tttgcatctttgatccttttggccaattttgactaat 304  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  39221412 tttgcatctttggtccttttggtcaattttgactaat 39221448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 176 - 330
Target Start/End: Original strand, 24332918 - 24333077
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaa-ccatttgcat 274  Q
    |||||||||||| |||  |||||||| ||||| |||  ||||||| ||| || |||||||| ||||||||||  ||||||||||||||| || |||||||    
T  24332918 aagtgcactttttcccccttaagtttcaaaaacttgcaattttggccccttatgtacaaaaactacaattttgaccctctaagatttaacccctttgcat 24333017  T
Q  275 ctttgatccttttggccaattttgac----taatccctacatggcatgccacatgtgtaa 330  Q
    ||||| ||||||||| ||||||||||     ||| ||||| ||||||||||| |||||||    
T  24333018 ctttggtccttttggtcaattttgaccagtcaatgcctacgtggcatgccacgtgtgtaa 24333077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 42196296 - 42196171
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    ||||||||||| ||||   ||| ||||||||| |||||| ||||| || ||| |||||||| ||||| |||||| || ||||||||||  ||||||||||    
T  42196296 aagtgcactttcccccccctaacttttaaaaagttgtgaatttggccctctatgtacaaaaactacatttttagtcccctaagatttagcccatttgcat 42196197  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    ||||| ||||||||| ||||||||||    
T  42196196 ctttggtccttttggtcaattttgac 42196171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 176 - 299
Target Start/End: Complemental strand, 16650951 - 16650827
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    |||||||||||||| |  |||| ||||||||| |||  ||||||  |||||| ||| |||| ||||||||||||||| ||||| ||||  ||||||||||    
T  16650951 aagtgcacttttccacccttaacttttaaaaacttgcaattttgaccccctaagtataaaaactacaattttagccccctaaggtttagcccatttgcat 16650852  T
Q  275 ctttgatccttttggccaattttga 299  Q
    ||||| ||||||||| |||||||||    
T  16650851 ctttggtccttttggtcaattttga 16650827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 42195139 - 42195262
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcat 274  Q
    |||||||||||||||| || |   |||||||| ||| |||||||| |||||| |||||||| |||||||||| | || |||||||||| ||  |||||||    
T  42195139 aagtgcacttttcccccttaac--tttaaaaagttgcgattttggccccctatgtacaaaatctacaattttggtcccctaagatttagcccctttgcat 42195236  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    ||||| ||||||||| ||||||||||    
T  42195237 ctttggtccttttggtcaattttgac 42195262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 221 - 300
Target Start/End: Original strand, 16650042 - 16650122
Alignment:
Q  221 tcccctacgtacaaaacctacaattttagccctctaagatttaa-ccatttgcatctttgatccttttggccaattttgac 300  Q
    ||||||| |||||||| ||||||||||  ||||||||||||||| || |||||||||||| ||||||||| ||||||||||    
T  16650042 tcccctaagtacaaaaactacaattttgaccctctaagatttaacccctttgcatctttggtccttttggtcaattttgac 16650122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 176 - 287
Target Start/End: Original strand, 21835046 - 21835157
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaa-ccatttgcat 274  Q
    ||||||||||| ||||| | |||||| ||||| |||||||||||  |||||| |||||||| ||||||||||  ||| ||||||||||| || ||||||     
T  21835046 aagtgcactttccccctct-aagtttgaaaaagttgtgattttgaccccctatgtacaaaaactacaattttgaccccctaagatttaacccctttgcaa 21835144  T
Q  275 ctttgatcctttt 287  Q
    |||||||||||||    
T  21835145 ctttgatcctttt 21835157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 176 - 299
Target Start/End: Original strand, 25523074 - 25523198
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    ||||||||||||||||  |||| ||| ||||| |||  ||||| | |||||| |||||||| ||||||||||  ||| ||||||||||  || |||||||    
T  25523074 aagtgcacttttccccccttaactttcaaaaacttgcaattttagccccctaagtacaaaaactacaattttgaccccctaagatttagcccctttgcat 25523173  T
Q  275 ctttgatccttttggccaattttga 299  Q
    ||||||||||||||  |||||||||    
T  25523174 ctttgatccttttgatcaattttga 25523198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 174 - 330
Target Start/End: Complemental strand, 36486586 - 36486425
Alignment:
Q  174 tgaagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgc 272  Q
    |||||||||||||| |||   ||| ||||||||| |||  ||||||  |||||| |||||||| |||||||||| | || ||||||||||  || |||||    
T  36486586 tgaagtgcactttttcccccctaacttttaaaaacttgcaattttgaccccctaagtacaaaaactacaattttggtcccctaagatttagtccctttgc 36486487  T
Q  273 atctttgatccttttggccaattttgac----taatccctacatggcatgccacatgtgtaa 330  Q
    | ||||||||||||| | ||||||||||     ||| ||||| ||||||||||| |||||||    
T  36486486 aactttgatcctttttgtcaattttgaccggtcaatgcctacgtggcatgccacgtgtgtaa 36486425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 195 - 300
Target Start/End: Original strand, 2186794 - 2186900
Alignment:
Q  195 taagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcatctttgatccttttggccaa 293  Q
    ||||||| ||||| |||  |||||||||  ||| |||||||| |||||||||||  || |||||||||| ||| ||| |||||||| ||||||||| |||    
T  2186794 taagtttcaaaaagttgcaattttggtcttctatgtacaaaaactacaattttaatcccctaagatttagccattttacatctttggtccttttggtcaa 2186893  T
Q  294 ttttgac 300  Q
    |||||||    
T  2186894 ttttgac 2186900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 18486998 - 18486872
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcat 274  Q
    ||||||||||| ||||  |||| ||| ||||| |||  ||||||| |||||| ||| | || | |||||||| |||| |||||||||| ||  |||||||    
T  18486998 aagtgcactttcccccccttaactttcaaaaacttgcaattttggccccctaagtatagaaaccacaattttggccccctaagatttagcccctttgcat 18486899  T
Q  275 ctttgatccttttggccaattttgact 301  Q
    ||||| ||||||||| |||||||||||    
T  18486898 ctttggtccttttggtcaattttgact 18486872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 176 - 301
Target Start/End: Original strand, 19752917 - 19753042
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaaccat-ttgcat 274  Q
    ||||||||||||||||  | || ||| ||||| |||  ||||||| |||||| |||||||| |||||||||| |||| ||| |||||| ||   ||||||    
T  19752917 aagtgcacttttcccccct-aactttcaaaaacttgcaattttggccccctaagtacaaaaactacaattttggccccctatgatttagccccattgcat 19753015  T
Q  275 ctttgatccttttggccaattttgact 301  Q
    ||||| ||||||||| |||||||||||    
T  19753016 ctttggtccttttggtcaattttgact 19753042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 214 - 299
Target Start/End: Original strand, 25055455 - 25055541
Alignment:
Q  214 attttggtcccctacgtacaaaacctacaattttagccctctaagatttaacc-atttgcatctttgatccttttggccaattttga 299  Q
    |||||| ||||||| ||| |||| |||||||||| |||| |||||||||| || ||||||||||||| ||||||||  |||||||||    
T  25055455 attttgatcccctatgtataaaaactacaattttggccccctaagatttagcccatttgcatctttggtccttttgatcaattttga 25055541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 176 - 266
Target Start/End: Complemental strand, 40255768 - 40255678
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacc 266  Q
    ||||||||||||||||| |||| ||||||||| |||  ||||||  ||||||  |||| || |||||||||| |||| |||||||||||||    
T  40255768 aagtgcacttttcccctcttaatttttaaaaacttgcaattttgaccccctaaatacagaaactacaattttggccccctaagatttaacc 40255678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 28538681 - 28538806
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    |||||||||||||| |   ||| ||| ||||| |||  ||||||  ||| || |||||||| ||||||||||||||| ||||||||||  || ||||||     
T  28538681 aagtgcacttttccacccgtaactttcaaaaacttgcaattttgaccccttaagtacaaaaactacaattttagccccctaagatttagcccctttgcaa 28538780  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    ||||||||||||| | ||||||||||    
T  28538781 ctttgatcctttttgtcaattttgac 28538806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 330
Target Start/End: Original strand, 1015527 - 1015648
Alignment:
Q  214 attttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcatctttgatccttttggccaattttgactaatc----cct 308  Q
    ||||||| |||||  |||||||||||||||||||| ||| |||||| |||  || ||||||| |||| |||||||  ||||||||||| ||||    |||    
T  1015527 attttggccccctgtgtacaaaacctacaattttaaccccctaagaattagtccctttgcatatttggtccttttccccaattttgaccaatcaatgcct 1015626  T
Q  309 acatggcatgccacatgtgtaa 330  Q
    || || ||||||||||||||||    
T  1015627 acgtgacatgccacatgtgtaa 1015648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 203 - 297
Target Start/End: Complemental strand, 5962641 - 5962546
Alignment:
Q  203 aaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaac-catttgcatctttgatccttttggccaatttt 297  Q
    ||||| |||| |||||||||||||| |||||||| ||| ||||||||||  |||| ||||| |  |||| |||||||| |||||||| ||||||||    
T  5962641 aaaaatttgtaattttggtcccctaagtacaaaaactataattttagccacctaatatttagctaatttacatctttggtccttttgaccaatttt 5962546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 330
Target Start/End: Complemental strand, 28539893 - 28539757
Alignment:
Q  199 ttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaa-ccatttgcatctttgatccttttggccaatttt 297  Q
    ||||||||| |||  ||||||  || ||| |||||||| |||||||||| | || ||||||||||  || |||||| ||||||||||||| |||||||||    
T  28539893 ttttaaaaacttgcaattttgaccctctaagtacaaaaactacaattttggtcccctaagatttagtccctttgcaactttgatcctttttgccaatttt 28539794  T
Q  298 gac----taatccctacatggcatgccacatgtgtaa 330  Q
    |||     ||| ||||| ||||||||||| |||||||    
T  28539793 gaccggtcaatgcctacgtggcatgccacgtgtgtaa 28539757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 22940718 - 22940594
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    ||||||||||||||||  |||| ||| ||||| |||  ||||||| |||||| ||||||||  ||||||||| | || |||| |||||  || ||| |||    
T  22940718 aagtgcacttttccccccttaactttcaaaaacttgcaattttggccccctaagtacaaaaattacaatttt-gacccctaaaatttagccccttttcat 22940620  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    |||| |||||||||| ||||||||||    
T  22940619 cttttatccttttggtcaattttgac 22940594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 176 - 330
Target Start/End: Complemental strand, 33160382 - 33160224
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaaccatttgcatc 275  Q
    ||||||||||||||||  |||| ||| ||||| |||  ||||| | |||||| ||| | || ||||||||||  |||  ||||||||| ||  ||||| |    
T  33160382 aagtgcacttttccccccttaattttcaaaaacttgcaattttagccccctaagtatagaaactacaattttgaccccttaagatttagcccattgcaac 33160283  T
Q  276 tttgatccttttggccaattttgac----taatccctacatggcatgccacatgtgtaa 330  Q
    ||| |||||||| ||||||||||||     ||| ||||| ||||| |||||||||||||    
T  33160282 tttaatccttttagccaattttgaccggtcaatgcctacgtggcacgccacatgtgtaa 33160224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 36641153 - 36641199
Alignment:
Q  181 cacttttccccttttaagttttaaaaaattgtgattttggtccccta 227  Q
    |||||||| |||| ||||||| |||| ||||||||||||||||||||    
T  36641153 cacttttcgccttctaagtttcaaaatattgtgattttggtccccta 36641199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 5961476 - 5961533
Alignment:
Q  241 caattttagccctctaagatttaacca-tttgcatctttgatccttttggccaatttt 297  Q
    |||||||||||| |||| ||||||||  ||||||||||||||||||||| ||| ||||    
T  5961476 caattttagccccctaaaatttaacccctttgcatctttgatccttttgaccattttt 5961533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 1016936 - 1016888
Alignment:
Q  199 ttttaaaaaattgtgattttggtcccctacgtacaaaacctacaatttt 247  Q
    |||||||||||||| |||||||||  ||| |||||||| ||||||||||    
T  1016936 ttttaaaaaattgtaattttggtcttctatgtacaaaaactacaatttt 1016888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 301
Target Start/End: Complemental strand, 19754188 - 19754100
Alignment:
Q  214 attttggtcccctacgtacaaaacctacaattttagccctctaagatttaaccat-ttgcatctttgatccttttggccaattttgact 301  Q
    ||||||| ||||||  ||||||| |||||||||| |||| ||| |||||| ||   ||||||||||| ||||||||  |||||||||||    
T  19754188 attttggccccctaaatacaaaaactacaattttggccccctatgatttagccccattgcatctttggtccttttgaacaattttgact 19754100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 301
Target Start/End: Complemental strand, 25524156 - 25524068
Alignment:
Q  214 attttggtcccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcatctttgatccttttggccaattttgact 301  Q
    ||||||| | |||| |||||||| ||| ||||||  ||| |||||||||| ||  |||||||||||  ||||||||| |||||||||||    
T  25524156 attttggcctcctaagtacaaaaactataattttgaccccctaagatttagcccctttgcatctttagtccttttggtcaattttgact 25524068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 300
Target Start/End: Original strand, 36485358 - 36485430
Alignment:
Q  229 gtacaaaacctacaattttagccctctaagatttaa-ccatttgcatctttgatccttttggccaattttgac 300  Q
    |||||||| ||| |||||| |||| ||||||||||| || |||||| |||||||| |||| | ||||||||||    
T  36485358 gtacaaaaactataattttggccccctaagatttaacccctttgcaactttgatcatttttgtcaattttgac 36485430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 179 - 287
Target Start/End: Complemental strand, 3333119 - 3333010
Alignment:
Q  179 tgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcatctt 277  Q
    ||||||||||||||| ||||||| ||||| ||| |||||||| |||||| |||||||| ||||||||||| |||||||| |||||  || |||||| |||    
T  3333119 tgcacttttccccttctaagtttgaaaaagttgcgattttggccccctatgtacaaaaactacaattttaaccctctaaaatttagcccctttgcaactt 3333020  T
Q  278 tgatcctttt 287  Q
    ||||||||||    
T  3333019 tgatcctttt 3333010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 174 - 297
Target Start/End: Original strand, 6840197 - 6840319
Alignment:
Q  174 tgaagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaa-ccatttgc 272  Q
    ||||||||||||| ||||||  |||||| ||||| ||| |||||||| ||| ||  ||||||| ||| ||||||  ||||||||||||||| || |||||    
T  6840197 tgaagtgcactttccccctt--aagtttcaaaaagttgcgattttggccccttaaatacaaaaactataattttgaccctctaagatttaatccctttgc 6840294  T
Q  273 atctttgatccttttggccaatttt 297  Q
    |||||||||||||||| ||||||||    
T  6840295 atctttgatccttttgaccaatttt 6840319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 5658761 - 5658886
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaatttt-agccctctaagattta-accatttgca 273  Q
    ||||||| ||||||||  |||||||||||||| || | ||||| || ||||| |||||||| |||||||||| | |||| |||||||||  |||||||||    
T  5658761 aagtgcatttttccccccttaagttttaaaaagttataattttagttccctatgtacaaaaactacaattttgatccct-taagatttagcccatttgca 5658859  T
Q  274 tctttgatccttttggccaattttgac 300  Q
     ||||||||||||||| ||||||||||    
T  5658860 actttgatccttttggtcaattttgac 5658886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 6842379 - 6842254
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    |||||||||||||||| | ||||||| ||||| |||  ||||||| |||||| || ||||| ||||||||||||  |  ||| |||||  |  |||||||    
T  6842379 aagtgcacttttccccctctaagtttcaaaaagttgcaattttggccccctatgtgcaaaaactacaattttagttccttaaaatttagtctgtttgcat 6842280  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    ||||||||||||||||||||||||||    
T  6842279 ctttgatccttttggccaattttgac 6842254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 229 - 300
Target Start/End: Complemental strand, 26575097 - 26575025
Alignment:
Q  229 gtacaaaacctacaattttagccctctaagatttaac-catttgcatctttgatccttttggccaattttgac 300  Q
    |||||||| |||||||||| |||| |||||||||||| | |||||| ||||||||||||| ||||||||||||    
T  26575097 gtacaaaaactacaattttggccccctaagatttaactcctttgcaactttgatcctttttgccaattttgac 26575025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 231 - 301
Target Start/End: Complemental strand, 3333566 - 3333495
Alignment:
Q  231 acaaaacctacaattttagccctctaagatttaaccattt-gcatctttgatccttttggccaattttgact 301  Q
    |||||| ||||||||||| ||||||| |||||| ||  || ||| |||||||||||||||||||||||||||    
T  3333566 acaaaaactacaattttaaccctctatgatttagccccttcgcaactttgatccttttggccaattttgact 3333495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 300
Target Start/End: Complemental strand, 1829676 - 1829574
Alignment:
Q  199 ttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcatctttgatccttttggccaatttt 297  Q
    ||||||||| |||  ||||||  |||||| ||| |||| |||||||||| |||| |||||||||| ||  |||||||||||| || |||||| |||||||    
T  1829676 ttttaaaaacttgcaattttgaccccctaagtataaaaactacaattttggccccctaagatttagcccctttgcatctttggtcattttggtcaatttt 1829577  T
Q  298 gac 300  Q
    |||    
T  1829576 gac 1829574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 330
Target Start/End: Original strand, 29473082 - 29473241
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaag-atttaaccatttgcat 274  Q
    ||||||||||||||||  |||||||||||||| |||  |||||||| ||||| | ||||||   |||||||| |||||| ||| |||   || ||||||     
T  29473082 aagtgcacttttccccccttaagttttaaaaagttgcaattttggttccctatgaacaaaaataacaattttggccctccaagaattggcccctttgcaa 29473181  T
Q  275 ctttgatccttttggccaattttgac----taatccctacatggcatgccacatgtgtaa 330  Q
     |||||||||||| | ||||||| ||     ||| ||||| |||||||||||||||||||    
T  29473182 ttttgatcctttttgtcaatttttaccggtcaatgcctacgtggcatgccacatgtgtaa 29473241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 222 - 302
Target Start/End: Complemental strand, 10785963 - 10785882
Alignment:
Q  222 cccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcatctttgatccttttggccaattttgacta 302  Q
    |||||| |||||||| ||||||||||| |||  ||||||||| ||  |||||| |||||||||||||  |||||||||||||    
T  10785963 cccctaagtacaaaaactacaattttaaccccttaagatttagcccctttgcaactttgatcctttttaccaattttgacta 10785882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 27437833 - 27437958
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaac-catttgcat 274  Q
    ||||||||||||| ||  |||| ||| ||||| |||  ||||||| ||||||   | |||| ||||||||||  ||| |||||||||| | | ||||||     
T  27437833 aagtgcacttttctccccttaactttaaaaaagttgcaattttggccccctataaataaaaactacaattttgaccccctaagatttagctcctttgcaa 27437932  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    ||||| ||||||||||||||||||||    
T  27437933 ctttggtccttttggccaattttgac 27437958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 301
Target Start/End: Original strand, 7314885 - 7315010
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcat 274  Q
    |||||||||||||||| | ||| ||| ||||| |||  ||||||| |||||| |||  ||| | ||||||||  ||| |||||||||| ||  |||||||    
T  7314885 aagtgcacttttccccctctaactttcaaaaacttgcaattttgg-cccctaagtatcaaaacaacaattttgaccccctaagatttagcccctttgcat 7314983  T
Q  275 ctttgatccttttggccaattttgact 301  Q
    ||||| || |||||| |||||||||||    
T  7314984 ctttggtcattttggtcaattttgact 7315010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 12382807 - 12382681
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaaccattt-gcat 274  Q
    |||||||||||||| | | ||| ||||||||| |||| ||||||  |||||| |||  ||| ||| ||||||   || | ||||||||||| ||| ||||    
T  12382807 aagtgcacttttccacctctaatttttaaaaatttgtaattttgaccccctaagtattaaaactataattttgatccccaaagatttaacccttttgcat 12382708  T
Q  275 ctttgatccttttggccaattttgact 301  Q
    ||||| ||||||| || ||||||||||    
T  12382707 ctttggtccttttagctaattttgact 12382681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 8659270 - 8659395
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    |||||||||||||||| | ||| ||| ||||| |||  ||||||| |||||| |||| ||| | |||||||   ||| ||||||||||  ||  |||||     
T  8659270 aagtgcacttttccccctctaactttcaaaaacttgcaattttggccccctaagtaccaaaaccacaatttagcccccctaagatttagccccattgcaa 8659369  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    ||||| |||||||| |||||||||||    
T  8659370 ctttggtccttttgaccaattttgac 8659395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 299
Target Start/End: Complemental strand, 16704593 - 16704469
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacc-atttgcat 274  Q
    |||||||||||||| |  |||| ||| ||||| |||  ||||||  |||||| |||||||| ||||||||||   ||| ||||||||| ||  ||||||     
T  16704593 aagtgcacttttcctcccttaactttcaaaaacttgcaattttgaccccctaagtacaaaaactacaattttgatcctttaagatttagcctctttgcaa 16704494  T
Q  275 ctttgatccttttggccaattttga 299  Q
    || |||||||||| | |||||||||    
T  16704493 ctatgatcctttttgtcaattttga 16704469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 1290294 - 1290169
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaa-ccatttgcat 274  Q
    ||||||||||||||||  |||| ||| ||||  |||  ||||||| || ||| |||||||| ||||||||||||||| ||||||||||| || |||||||    
T  1290294 aagtgcacttttccccccttaactttcaaaatcttgcaattttggccctctaagtacaaaaactacaattttagccccctaagatttaacccctttgcat 1290195  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    ||||| ||||||||| ||||||||||    
T  1290194 ctttggtccttttggtcaattttgac 1290169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 195 - 330
Target Start/End: Complemental strand, 10448337 - 10448197
Alignment:
Q  195 taagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcatctttgatccttttggccaa 293  Q
    ||||||| ||||| ||| |||||| | |||||| |||||||| |||||||||| |||||||||||| ||  || |||||||||||| |||||||||||||    
T  10448337 taagtttcaaaaagttgcgattttagccccctatgtacaaaaactacaattttggccctctaagatatagcccctttgcatctttggtccttttggccaa 10448238  T
Q  294 ttttgac----taatccctacatggcatgccacatgtgtaa 330  Q
    |||||||     ||| ||||| ||||||||||| |||||||    
T  10448237 ttttgaccagtcaatgcctacgtggcatgccacgtgtgtaa 10448197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 174 - 330
Target Start/End: Original strand, 31599792 - 31599953
Alignment:
Q  174 tgaagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgc 272  Q
    |||||||||||||| |||   ||| ||||||||| |||  ||||||  |||||| |||||||| |||||||||| | || ||||||||||  || |||||    
T  31599792 tgaagtgcactttttcccccctaacttttaaaaacttgcaattttgaccccctaagtacaaaaactacaattttggtcccctaagatttagcccctttgc 31599891  T
Q  273 atctttgatccttttggccaattttgac----taatccctacatggcatgccacatgtgtaa 330  Q
    | ||||||||||||| ||||||||||||     ||| ||||| ||||||||||| |||||||    
T  31599892 aactttgatcctttttgccaattttgaccggtcaatgcctacgtggcatgccacgtgtgtaa 31599953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 176 - 297
Target Start/End: Original strand, 10447011 - 10447134
Alignment:
Q  176 aagtgcacttttcccctt-ttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgca 273  Q
    |||||||||||||||| | |||||||| ||||| |||  ||||| | |||||| |||||||| | ||||||||| ||| |||||||||| ||  ||||||    
T  10447011 aagtgcacttttccccctcttaagtttcaaaaagttgcaattttagccccctatgtacaaaaaccacaattttacccccctaagatttagcccctttgca 10447110  T
Q  274 tctttgatccttttggccaatttt 297  Q
    |||||| |||||||||| ||||||    
T  10447111 tctttggtccttttggctaatttt 10447134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 176 - 301
Target Start/End: Original strand, 12129628 - 12129754
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    ||||||||||||||||| |||| ||| ||||| |||  ||||||| ||| || |||||||| ||||||||||  |||  |||||||||  ||||||||||    
T  12129628 aagtgcacttttcccctcttaactttcaaaaacttgcaattttggccccgtaagtacaaaaactacaattttgaccccttaagatttagcccatttgcat 12129727  T
Q  275 ctttgatccttttggccaattttgact 301  Q
    ||||| || |||||  |||||||||||    
T  12129728 ctttggtcattttgatcaattttgact 12129754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 31601081 - 31600956
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    |||||||||||| ||| | ||| ||||||||| |||  ||||||  |||||| |||||||| ||||||||||  |||  |||||||||  |||||||||     
T  31601081 aagtgcactttttcccctctaacttttaaaaacttgcaattttgaccccctaagtacaaaaactacaattttgaccccttaagatttagcccatttgcaa 31600982  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    ||||||||||||| | ||||||||||    
T  31600981 ctttgatcctttttgtcaattttgac 31600956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 35935629 - 35935504
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacc-atttgcat 274  Q
    ||||||||||| ||||  |||| ||||||||| |||  ||||| | |||||| ||||| || |||||||||| |||| |||||||||| ||   |||||     
T  35935629 aagtgcactttcccccccttaacttttaaaaatttgcaattttagccccctaagtacataaactacaattttggccccctaagatttagcctcattgcaa 35935530  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    |||| |||||||||||||||||||||    
T  35935529 ctttaatccttttggccaattttgac 35935504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 1834124 - 1834250
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctc-taagatttaacc-atttgca 273  Q
    |||||||||||||||| | ||| ||| ||||| ||   ||||||  |||||| ||| |||| |||||||||| |||| | ||||||||| || |||||||    
T  1834124 aagtgcacttttccccctctaactttaaaaaacttacaattttgaccccctatgtataaaaactacaattttggcccccctaagatttagcccatttgca 1834223  T
Q  274 tctttgatccttttggccaattttgac 300  Q
    |||||| ||||||||| ||||||||||    
T  1834224 tctttggtccttttggtcaattttgac 1834250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 1289102 - 1289227
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaa-ccatttgcat 274  Q
    ||||| ||||||||||  |||| ||| ||| | |||| |||||| ||| ||| ||| |||| ||||||||||||||   |||||||||| ||  ||||||    
T  1289102 aagtgaacttttccccccttaactttcaaatatttgtaattttgatcctctaagtataaaaactacaattttagcctcttaagatttaacccccttgcat 1289201  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    ||||| ||||||||| ||||||||||    
T  1289202 ctttggtccttttggtcaattttgac 1289227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 19750670 - 19750546
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    ||||||||||||||||  | || ||||||||| |||  ||||||| |||||| |||||||| ||||||||||| ||| ||||||||||  ||  |||||     
T  19750670 aagtgcacttttcccccct-aacttttaaaaacttgcaattttggccccctaagtacaaaaactacaattttacccccctaagatttagccccattgcaa 19750572  T
Q  275 ctttgatccttttggccaattttgac 300  Q
     |||||||||||||| || |||||||    
T  19750571 atttgatccttttggtcacttttgac 19750546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 19789136 - 19789260
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    ||||||||||||||||  | || ||||||||| |||  ||||||| |||||| |||||||| ||||||||||| ||| ||||||||||  ||  |||||     
T  19789136 aagtgcacttttcccccct-aacttttaaaaacttgcaattttggccccctaagtacaaaaactacaattttacccccctaagatttagccccattgcaa 19789234  T
Q  275 ctttgatccttttggccaattttgac 300  Q
     |||||||||||||| || |||||||    
T  19789235 atttgatccttttggtcacttttgac 19789260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 176 - 259
Target Start/End: Original strand, 1963201 - 1963284
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaaga 259  Q
    ||||||||||||||||  |||| ||| ||||| |||  ||||||| | |||| |||||||| ||||||||||||||| ||||||    
T  1963201 aagtgcacttttccccccttaactttcaaaaagttgcaattttggcctcctatgtacaaaaactacaattttagccccctaaga 1963284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 4098662 - 4098705
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttg 219  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||    
T  4098662 aagtgcacttttcacctcttaagttttaaaaaattgtgattttg 4098705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 300
Target Start/End: Complemental strand, 37728638 - 37728536
Alignment:
Q  199 ttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcatctttgatccttttggccaatttt 297  Q
    ||||||||| |||  ||||||| | |||| |||||||| ||||||||||  |||| ||||||||| |   |||||||||||||||||||| | |||||||    
T  37728638 ttttaaaaagttgcaattttggcctcctatgtacaaaaactacaattttgaccctttaagatttagcttctttgcatctttgatccttttagtcaatttt 37728539  T
Q  298 gac 300  Q
    |||    
T  37728538 gac 37728536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 301
Target Start/End: Original strand, 3927671 - 3927797
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    |||||||||||||||| | ||| ||||||||  ||| |||||||| |||| | |||  ||| |||||||||| | |||||| | ||||  ||||||||||    
T  3927671 aagtgcacttttccccctctaacttttaaaatgttgcgattttggccccccatgtatgaaaactacaattttggtcctctatgttttagcccatttgcat 3927770  T
Q  275 ctttgatccttttggccaattttgact 301  Q
     ||   ||||||||| |||||||||||    
T  3927771 tttcagtccttttgggcaattttgact 3927797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 300
Target Start/End: Complemental strand, 13509432 - 13509330
Alignment:
Q  199 ttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcatctttgatccttttggccaatttt 297  Q
    |||||||||||||  ||||||| |||| | |||  ||| ||||||||||   || |||||||||| ||  |||||| ||||| |||||||||||||||||    
T  13509432 ttttaaaaaattgcaattttggccccccaagtatgaaaactacaattttgatcccctaagatttagcccctttgcacctttgctccttttggccaatttt 13509333  T
Q  298 gac 300  Q
    |||    
T  13509332 gac 13509330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 299
Target Start/End: Complemental strand, 8758930 - 8758809
Alignment:
Q  179 tgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaac-catttgcatctt 277  Q
    |||||||||||||  |||| ||| ||||| |||  ||||||| |||||| ||||| || |||||||||| ||||  ||||||||| | |  |||||  ||    
T  8758930 tgcacttttccccccttaactttcaaaaacttgcaattttggccccctaagtacagaaactacaattttggccccttaagatttagctccattgcaattt 8758831  T
Q  278 tgatccttttggccaattttga 299  Q
    | |||||||||| |||||||||    
T  8758830 taatccttttggtcaattttga 8758809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 10471484 - 10471359
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    ||||||||||||||||  |||| ||| ||||| |||  ||||||| |||||| |||| ||| | |||||||   ||| ||||||||||  ||  |||||     
T  10471484 aagtgcacttttccccccttaactttcaaaaacttgcaattttggccccctaagtaccaaaaccacaatttagcccccctaagatttagccccattgcaa 10471385  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    ||||| |||||||| |||||||||||    
T  10471384 ctttggtccttttgaccaattttgac 10471359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 25685918 - 25685793
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    |||||||||||||||| | ||| ||| ||||| |||  ||||||| |||||| |||| ||| | |||||||   ||| ||||||||||  ||  |||||     
T  25685918 aagtgcacttttccccctctaactttcaaaaacttgcaattttggccccctaagtaccaaaaccacaatttagaccccctaagatttagccccattgcaa 25685819  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    ||||| |||||||| |||||||||||    
T  25685818 ctttggtccttttgaccaattttgac 25685793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 301
Target Start/End: Complemental strand, 1835136 - 1835072
Alignment:
Q  238 ctacaattttagccctctaagatttaacca-tttgcatctttgatccttttggccaattttgact 301  Q
    ||||||||||  ||| |||||||||| ||  |||||||||||| ||||||| |||||||||||||    
T  1835136 ctacaattttgaccccctaagatttagcccctttgcatctttggtccttttagccaattttgact 1835072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 301
Target Start/End: Original strand, 21178039 - 21178127
Alignment:
Q  214 attttggtcccctacgtacaaaacctacaattttagccctctaagatttaaccattt-gcatctttgatccttttggccaattttgact 301  Q
    |||||| ||||||| | |||||| ||||||||||  ||| |||| ||||| || ||| ||| |||||||| |||| |||||||||||||    
T  21178039 attttgatcccctatgaacaaaaactacaattttgaccccctaaaatttagcccttttgcaactttgatcatttttgccaattttgact 21178127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 287
Target Start/End: Original strand, 50909296 - 50909388
Alignment:
Q  195 taagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaaccatttgcatctttgatcctttt 287  Q
    ||||||||||||| |||  ||||||  | ||||  || |||| ||||||||||| ||  ||||||||||  |||||||||||||| |||||||    
T  50909296 taagttttaaaaagttgcaattttgacctcctatatataaaaactacaattttaacctcctaagatttagtcatttgcatctttggtcctttt 50909388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 18906083 - 18905958
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaac-catttgcat 274  Q
    |||||||||||||||||| ||| ||| ||||| |||  ||||| | |||||| |||||||| ||||||||||||||| |||||||||| | |||||||||    
T  18906083 aagtgcacttttccccttctaactttcaaaaacttgcaattttagccccctaagtacaaaaactacaattttagccc-ctaagatttagctcatttgcat 18905985  T
Q  275 ctttgatccttttggccaattttgact 301  Q
    ||||| || |||||  |||||||||||    
T  18905984 ctttggtctttttgatcaattttgact 18905958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 214 - 330
Target Start/End: Original strand, 22587544 - 22587664
Alignment:
Q  214 attttggtcccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcatctttgatccttttggccaattttgac----taatccct 308  Q
    ||||||||||||||  ||||||| |||||||||| |||| |||||||||| ||  |||||||||||| ||||||||||||||||||||     ||| |||    
T  22587544 attttggtcccctat-tacaaaaactacaattttggccccctaagatttagcctctttgcatctttggtccttttggccaattttgaccagtcaatgcct 22587642  T
Q  309 acatggcatgccacatgtgtaa 330  Q
    |||||||||||||| |||||||    
T  22587643 acatggcatgccacgtgtgtaa 22587664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 176 - 263
Target Start/End: Complemental strand, 7899978 - 7899891
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta 263  Q
    ||||||||||||||||  |||| ||| ||||| |||  |||||||||||||| ||||| || ||||||||||||||| ||||||||||    
T  7899978 aagtgcacttttccccccttaactttcaaaaacttgcaattttggtcccctaagtacagaaactacaattttagccccctaagattta 7899891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 203 - 300
Target Start/End: Original strand, 11996739 - 11996837
Alignment:
Q  203 aaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaa-ccatttgcatctttgatccttttggccaattttgac 300  Q
    ||||| ||| |||||||  |||||| |||||||| ||||||||||||  ||||||||||||| || ||| |||||||| ||||||||| ||||||||||    
T  11996739 aaaaagttgcgattttgaccccctatgtacaaaaactacaattttagttctctaagatttaacccctttacatctttggtccttttggtcaattttgac 11996837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 296
Target Start/End: Complemental strand, 22588049 - 22587929
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcat 274  Q
    ||||||| |||||||||  ||| ||| ||||| |||  ||||||| |||||| |||||||| |||||||||| ||||  ||||||||| ||  |||||||    
T  22588049 aagtgcatttttcccctcataactttcaaaaacttgcaattttgg-cccctatgtacaaaaactacaattttggccccttaagatttagcccctttgcat 22587951  T
Q  275 ctttgatccttttggccaattt 296  Q
    ||||| ||||||||||||||||    
T  22587950 ctttggtccttttggccaattt 22587929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 301
Target Start/End: Original strand, 13030297 - 13030420
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaac-catttgcat 274  Q
    |||||||||||||||| |  || ||| ||||| |||| ||||||| |||||| ||||||||  ||||||||| |||| |||||||||| | | |||||||    
T  13030297 aagtgcacttttccccct--aactttcaaaaacttgtaattttgg-cccctaagtacaaaaattacaatttttgccccctaagatttagctcttttgcat 13030393  T
Q  275 ctttgatccttttggccaattttgact 301  Q
    ||||| || |||||| |||||||||||    
T  13030394 ctttggtcattttggtcaattttgact 13030420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 263
Target Start/End: Complemental strand, 38840589 - 38840502
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta 263  Q
    ||||||||||||||||  |||| ||| ||||| |||  ||||| | |||||| |||||||| ||||||||||||||| ||||||||||    
T  38840589 aagtgcacttttccccccttaactttcaaaaacttgcaattttagccccctaagtacaaaaactacaattttagccccctaagattta 38840502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 36451016 - 36450891
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaac-catttgcat 274  Q
    |||||||||||||||| || || ||| ||||| |||  |||||||||||||| ||||| || |||||||||  |||| | |||| ||| | | ||||||     
T  36451016 aagtgcacttttccccctt-aactttcaaaaacttgcaattttggtcccctaagtacagaaactacaatttcggccccccaagaattagctcctttgcaa 36450918  T
Q  275 ctttgatccttttggccaattttgact 301  Q
     ||||||||||||||||||||||||||    
T  36450917 ttttgatccttttggccaattttgact 36450891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 288
Target Start/End: Complemental strand, 23869607 - 23869518
Alignment:
Q  200 tttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcatctttgatccttttg 288  Q
    |||||||| |||  ||||||| ||||||  ||||||| ||||||||||||| | ||||||||||  || |||||||||||||||||||||    
T  23869607 tttaaaaacttgcaattttggccccctaaatacaaaaactacaattttagctccctaagatttagcccctttgcatctttgatccttttg 23869518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 36449783 - 36449908
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    ||||||||||||||||  |||| ||| ||||| |||  ||||||| |||||| |||||||| ||||||||||  ||| | |||| |||  || ||||||     
T  36449783 aagtgcacttttccccccttaactttcaaaaacttgcaattttggccccctaagtacaaaaactacaattttgcccccccaagaattaggccctttgcaa 36449882  T
Q  275 ctttgatccttttggccaattttgac 300  Q
     ||||||||||||| |||||||||||    
T  36449883 ttttgatccttttgaccaattttgac 36449908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 1034565 - 1034441
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaaccatttgcatc 275  Q
    ||||||||||||||||  |||| ||| |||||  ||  ||||||| ||||||||||| ||| | |||||||   ||| |||||||||| ||| ||||| |    
T  1034565 aagtgcacttttccccccttaactttcaaaaacatgcaattttggccccctacgtaccaaaaccacaatttagcccccctaagatttagccaattgcaac 1034466  T
Q  276 tttgatccttttggccaattttgac 300  Q
    |||| |||||||| ||| |||||||    
T  1034465 tttggtccttttgaccacttttgac 1034441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 214 - 300
Target Start/End: Complemental strand, 11258869 - 11258782
Alignment:
Q  214 attttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcatctttgatccttttggccaattttgac 300  Q
    ||||||| |||||| |||||||| |||||||||||| || ||||||||||  ||  |||||  |||||||||||||| ||||||||||    
T  11258869 attttggccccctaagtacaaaaactacaattttagtcccctaagatttagccccattgcagatttgatccttttggtcaattttgac 11258782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 214 - 300
Target Start/End: Original strand, 18299416 - 18299503
Alignment:
Q  214 attttggtcccctacgtacaaaacctacaattttagccctctaagatttaaccattt-gcatctttgatccttttggccaattttgac 300  Q
    ||||||| | |||| ||| |||| |||||||||| |||| ||| |||||| || ||| ||||||||||||||||||| ||||||||||    
T  18299416 attttggccacctaagtataaaaactacaattttggccccctatgatttagcccttttgcatctttgatccttttggtcaattttgac 18299503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 301
Target Start/End: Original strand, 22848196 - 22848322
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    |||||||||||| |||   ||| ||| ||||| |||  ||||||||||||||  ||||||| |||||||||| || | ||||||||||  || ||||||     
T  22848196 aagtgcacttttacccccctaactttcaaaaacttgcaattttggtcccctaaatacaaaaactacaattttggctccctaagatttagcccctttgcag 22848295  T
Q  275 ctttgatccttttggccaattttgact 301  Q
    ||||| ||||||||  |||||||||||    
T  22848296 ctttggtccttttgatcaattttgact 22848322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 300
Target Start/End: Original strand, 24475256 - 24475354
Alignment:
Q  203 aaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaac-catttgcatctttgatccttttggccaattttgac 300  Q
    ||||| |||| ||||| | |||||| ||| |||| |||||||||| |||| |||  ||||| | |||||||||||||| ||||||||| ||||||||||    
T  24475256 aaaaacttgtaatttttgccccctaagtataaaaactacaattttggccccctataatttagctcatttgcatctttggtccttttggtcaattttgac 24475354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 195 - 299
Target Start/End: Complemental strand, 802668 - 802563
Alignment:
Q  195 taagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaaga-tttaaccatttgcatctttgatccttttggccaa 293  Q
    ||||||| ||||| |||  ||||||| |||||  |||||||| ||||||||||  |||||||||| |||| || ||||||| |||| |||||| || |||    
T  802668 taagtttcaaaaacttgcaattttggccccctgtgtacaaaaactacaattttgaccctctaagattttacccctttgcatatttggtcctttaggtcaa 802569  T
Q  294 ttttga 299  Q
    ||||||    
T  802568 ttttga 802563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 24476917 - 24476869
Alignment:
Q  199 ttttaaaaaattgtgattttggtcccctacgtacaaaacctacaatttt 247  Q
    ||||||||| |||| |||||||||||||| |||||||| ||||||||||    
T  24476917 ttttaaaaacttgtaattttggtcccctaagtacaaaaactacaatttt 24476869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 247
Target Start/End: Original strand, 13567977 - 13568048
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaatttt 247  Q
    ||||| |||||||||||| ||||||| ||||| |||  ||||||| ||||||  ||||||| ||||||||||    
T  13567977 aagtgtacttttccccttctaagtttcaaaaacttgcaattttggccccctaaatacaaaaactacaatttt 13568048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 297
Target Start/End: Original strand, 18904372 - 18904494
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    ||||||||||||||||  |||| ||| |||||  ||  ||||||| ||| || |||||||| |||||||||| |  | |||||| |||  || ||| |||    
T  18904372 aagtgcacttttccccccttaactttcaaaaacgtgcaattttggccccttaagtacaaaaactacaattttggttccctaagaattagcccctttacat 18904471  T
Q  275 ctttgatccttttggccaatttt 297  Q
    ||||| |||||||||||||||||    
T  18904472 ctttggtccttttggccaatttt 18904494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 299
Target Start/End: Complemental strand, 810858 - 810753
Alignment:
Q  195 taagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaaga-tttaaccatttgcatctttgatccttttggccaa 293  Q
    ||||||| ||||| |||  ||||||| |||||  |||||||| ||||||||||  |||||||||| |||| || ||||||| |||| |||||| |  |||    
T  810858 taagtttcaaaaacttgcaattttggccccctgtgtacaaaaactacaattttgaccctctaagattttacccctttgcatatttggtcctttagatcaa 810759  T
Q  294 ttttga 299  Q
    ||||||    
T  810758 ttttga 810753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 12350020 - 12350076
Alignment:
Q  168 ttagattgaagtgcacttttccccttttaagttttaaaaaattgtgattttggtccc 224  Q
    ||||||| |||||||||||||  |  |||||||||||||  ||||||||||||||||    
T  12350020 ttagattaaagtgcacttttcaacccttaagttttaaaatgttgtgattttggtccc 12350076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 301
Target Start/End: Complemental strand, 9095 - 8997
Alignment:
Q  203 aaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaaccatt-tgcatctttgatccttttggccaattttgact 301  Q
    ||||| |||||||||| | | |||| |||||||| |||||||||| |||| |||||||||| || |  ||||||||||||||||||| ||||||||||||    
T  9095 aaaaagttgtgatttttgcctcctatgtacaaaaactacaattttggccc-ctaagatttagccctcatgcatctttgatccttttgaccaattttgact 8997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 288
Target Start/End: Original strand, 6348 - 6461
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacc-atttgcat 274  Q
    |||||||||||||| |  |||||||| ||||| ||  |||||| | |||||| |||||||| ||||||||||  ||| |||||||||| ||  |||||||    
T  6348 aagtgcacttttccgcccttaagtttcaaaaagttacgattttagccccctatgtacaaaaactacaattttgaccccctaagatttagcctttttgcat 6447  T
Q  275 ctttgatccttttg 288  Q
    ||||| ||||||||    
T  6448 ctttggtccttttg 6461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 176 - 301
Target Start/End: Original strand, 19493 - 19619
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcat 274  Q
    ||||||| ||||||||  |||| ||| ||||  |||  ||||||| |||||| ||| |||| ||||||||||   || |||||||||||||  |||||||    
T  19493 aagtgcatttttccccccttaattttcaaaaccttgcaattttggccccctaagtataaaaactacaattttgatcccctaagatttaacccctttgcat 19592  T
Q  275 ctttgatccttttggccaattttgact 301  Q
    |||||||| |||||| |||||||||||    
T  19593 ctttgatcattttggtcaattttgact 19619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2034 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold2034
Description:

Target: scaffold2034; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 238 - 363
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    ||||||||||| ||||  |||| ||| ||||| |||  |||||||||||||| |||||||| ||| |||||| | || |||||| |||  || |||||||    
T  238 aagtgcactttcccccccttaactttcaaaaagttgcaattttggtcccctatgtacaaaaactataattttggtcccctaagaattagcccctttgcat 337  T
Q  275 ctttgatccttttggccaattttgac 300  Q
     ||||||||||||  |||||||||||    
T  338 atttgatcctttttcccaattttgac 363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1303 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1303
Description:

Target: scaffold1303; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 1444 - 1569
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacc-atttgcat 274  Q
    ||||| |||||||||| | ||| ||| ||||| |||  ||||||  |||||| ||| |||| ||| ||||||  ||| |||||||||| || ||||||||    
T  1444 aagtgtacttttccccctctaactttaaaaaacttgcaattttgaccccctatgtataaaaactataattttgaccccctaagatttagcccatttgcat 1543  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    ||||| ||||||||| ||||||||||    
T  1544 ctttggtccttttggtcaattttgac 1569  T

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Target: scaffold0019 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 61555 - 61430
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaaccattt-gcat 274  Q
    |||||||||||||| |  |||| ||| ||||| |||  ||||| | |||||| |||||||| ||| |||||| |||| ||| |||||| || ||| ||||    
T  61555 aagtgcacttttcctcccttaattttcaaaaacttgcaattttagccccctaagtacaaaaactataattttggccccctatgatttagcccttttgcat 61456  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    ||||| ||||||||| ||||||||||    
T  61455 ctttggtccttttggtcaattttgac 61430  T

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Target: scaffold0019; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 60095 - 60220
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    |||||||||||||| | | ||| ||||||||| |||  ||||||  |||||| ||| |||| ||||||||||  ||| ||| ||||||  || |||||||    
T  60095 aagtgcacttttcctcctctaacttttaaaaacttgcaattttgaccccctatgtataaaaactacaattttgaccccctatgatttagcccctttgcat 60194  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    ||||| || |||||| ||||||||||    
T  60195 ctttggtctttttggtcaattttgac 60220  T

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Target: scaffold0302 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 18872 - 18747
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagattta-accatttgcat 274  Q
    |||||||||||| ||||  ||| ||||||||| |||  |||||||||||||| |||||||| ||| |||||| ||||  ||| |||||  ||  |||||     
T  18872 aagtgcactttttccctcctaacttttaaaaatttgcaattttggtcccctaggtacaaaaactataattttggccccttaaaatttagccccattgcaa 18773  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    |||| ||| |||||| ||||||||||    
T  18772 ctttaatcattttggtcaattttgac 18747  T

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Target: scaffold0302; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 252
Target Start/End: Original strand, 17475 - 17551
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccc 252  Q
    |||||||||||| |||  |||| ||||||||| |||  ||||||| |||||| |||||||| |||||||||| ||||    
T  17475 aagtgcactttttcccccttaacttttaaaaacttgcaattttggccccctaagtacaaaaactacaattttggccc 17551  T

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Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 49529 - 49404
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaac-catttgcat 274  Q
    ||||||||||||| ||  |||| ||| ||||| |||  ||||||| ||||||   | |||| ||||||||||  ||| |||||||||| | | ||||||     
T  49529 aagtgcacttttctccccttaactttaaaaaagttgcaattttggccccctataaataaaaactacaattttgaccccctaagatttagctcctttgcaa 49430  T
Q  275 ctttgatccttttggccaattttgac 300  Q
    ||||| ||||||||||||||||||||    
T  49429 ctttggtccttttggccaattttgac 49404  T

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Target: scaffold0049 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 287
Target Start/End: Complemental strand, 7511 - 7399
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtcccctacgtacaaaacctacaattttagccctctaagatttaacca-tttgcat 274  Q
    |||||||||| ||||| | ||||||| ||||| ||  |||||||  |||||| ||||| || ||||||||||  ||| |||||||||| ||  ||||||     
T  7511 aagtgcacttgtccccctctaagtttgaaaaagttacgattttgaccccctatgtacagaaactacaattttgaccccctaagatttagcccctttgcaa 7412  T
Q  275 ctttgatcctttt 287  Q
    |||||||||||||    
T  7411 ctttgatcctttt 7399  T

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Target: scaffold0049; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 301
Target Start/End: Complemental strand, 7922 - 7889
Alignment:
Q  268 tttgcatctttgatccttttggccaattttgact 301  Q
    |||||| |||||||||||||||||||||||||||    
T  7922 tttgcaactttgatccttttggccaattttgact 7889  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 454934 - 454985
Alignment:
Q  176 aagtgcacttttccccttttaagttttaaaaaattgtgattttggtccccta 227  Q
    ||||||||||||| ||  |||||||||||||| |||||||||||| ||||||    
T  454934 aagtgcacttttcacccattaagttttaaaaagttgtgattttggcccccta 454985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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