View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15440_high_3 (Length: 250)

Name: NF15440_high_3
Description: NF15440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15440_high_3
NF15440_high_3
[»] chr1 (21 HSPs)
chr1 (1-239)||(1878947-1879185)
chr1 (45-89)||(15360850-15360894)
chr1 (74-141)||(28689447-28689517)
chr1 (45-150)||(46499860-46499968)
chr1 (45-89)||(25006104-25006148)
chr1 (49-89)||(27738250-27738290)
chr1 (45-89)||(44032069-44032113)
chr1 (45-89)||(49517026-49517070)
chr1 (46-89)||(4200186-4200229)
chr1 (47-86)||(5941520-5941559)
chr1 (54-89)||(18420924-18420959)
chr1 (46-89)||(28467377-28467420)
chr1 (46-89)||(30371105-30371148)
chr1 (45-83)||(14737781-14737819)
chr1 (56-89)||(28788608-28788641)
chr1 (47-91)||(2773672-2773716)
chr1 (45-89)||(34179942-34179986)
chr1 (47-87)||(36151577-36151617)
chr1 (45-85)||(38867907-38867947)
chr1 (45-89)||(44936660-44936704)
chr1 (45-89)||(45999358-45999402)
[»] chr3 (21 HSPs)
chr3 (45-97)||(49586978-49587030)
chr3 (46-88)||(23793545-23793587)
chr3 (45-89)||(1395627-1395671)
chr3 (59-91)||(21367824-21367856)
chr3 (45-87)||(10101548-10101590)
chr3 (45-87)||(10212473-10212515)
chr3 (51-89)||(23785217-23785255)
chr3 (45-91)||(34954039-34954085)
chr3 (45-91)||(42808935-42808981)
chr3 (45-91)||(42809257-42809303)
chr3 (45-86)||(15304420-15304461)
chr3 (46-87)||(22232783-22232824)
chr3 (45-89)||(905040-905084)
chr3 (45-89)||(8007765-8007809)
chr3 (46-86)||(20192679-20192719)
chr3 (45-89)||(24887353-24887397)
chr3 (45-85)||(26990690-26990730)
chr3 (46-86)||(33965564-33965604)
chr3 (45-85)||(38462237-38462277)
chr3 (47-83)||(40122828-40122864)
chr3 (45-89)||(48384493-48384537)
[»] chr5 (17 HSPs)
chr5 (46-89)||(583843-583886)
chr5 (45-89)||(14295462-14295506)
chr5 (45-86)||(28586839-28586880)
chr5 (45-119)||(29116968-29117044)
chr5 (45-89)||(35135732-35135776)
chr5 (54-89)||(32059659-32059694)
chr5 (47-89)||(985591-985633)
chr5 (45-87)||(37063146-37063188)
chr5 (45-82)||(10303757-10303794)
chr5 (46-91)||(11615465-11615510)
chr5 (45-86)||(12595813-12595854)
chr5 (46-83)||(36639479-36639516)
chr5 (54-87)||(41277422-41277455)
chr5 (45-88)||(912719-912763)
chr5 (48-80)||(17756808-17756840)
chr5 (49-89)||(19177439-19177479)
chr5 (45-89)||(32969187-32969231)
[»] scaffold0024 (1 HSPs)
scaffold0024 (45-86)||(27532-27573)
[»] chr8 (12 HSPs)
chr8 (46-141)||(20672729-20672825)
chr8 (45-92)||(25867042-25867089)
chr8 (45-91)||(29262942-29262988)
chr8 (46-89)||(42237492-42237535)
chr8 (45-92)||(44348443-44348490)
chr8 (45-87)||(2100761-2100803)
chr8 (45-87)||(29699210-29699252)
chr8 (48-89)||(787176-787217)
chr8 (46-87)||(7026688-7026729)
chr8 (45-86)||(13561385-13561426)
chr8 (45-89)||(3537101-3537145)
chr8 (45-89)||(10437841-10437884)
[»] chr4 (23 HSPs)
chr4 (45-89)||(29373957-29374001)
chr4 (45-89)||(53626732-53626776)
chr4 (46-91)||(41701509-41701554)
chr4 (45-89)||(4071838-4071882)
chr4 (45-89)||(30024656-30024700)
chr4 (45-89)||(54325107-54325151)
chr4 (45-89)||(54327519-54327563)
chr4 (54-89)||(13949914-13949949)
chr4 (54-89)||(25434530-25434565)
chr4 (45-91)||(22684584-22684630)
chr4 (45-91)||(47800586-47800632)
chr4 (46-87)||(10192241-10192282)
chr4 (46-82)||(5131309-5131345)
chr4 (45-89)||(8130130-8130174)
chr4 (47-91)||(8469445-8469489)
chr4 (45-89)||(20936072-20936116)
chr4 (45-89)||(24929449-24929493)
chr4 (45-89)||(30338662-30338706)
chr4 (55-87)||(31038939-31038971)
chr4 (46-86)||(42321952-42321992)
chr4 (45-89)||(44007942-44007986)
chr4 (45-89)||(44119232-44119276)
chr4 (45-89)||(49219095-49219139)
[»] chr7 (20 HSPs)
chr7 (46-88)||(1417221-1417263)
chr7 (45-87)||(5006581-5006623)
chr7 (45-87)||(35536063-35536105)
chr7 (45-87)||(39591539-39591581)
chr7 (46-83)||(44239056-44239093)
chr7 (45-89)||(23918913-23918957)
chr7 (56-91)||(27121654-27121689)
chr7 (49-84)||(29363478-29363513)
chr7 (54-89)||(31002726-31002761)
chr7 (45-88)||(46825054-46825097)
chr7 (45-87)||(1418387-1418429)
chr7 (49-87)||(30456522-30456560)
chr7 (45-86)||(9527163-9527204)
chr7 (45-90)||(43318597-43318642)
chr7 (56-89)||(47046178-47046211)
chr7 (49-89)||(12835007-12835047)
chr7 (46-86)||(17989096-17989136)
chr7 (49-89)||(21247489-21247529)
chr7 (45-89)||(33894579-33894622)
chr7 (46-86)||(45777244-45777284)
[»] chr6 (15 HSPs)
chr6 (47-89)||(7713983-7714025)
chr6 (45-91)||(27693507-27693553)
chr6 (45-89)||(281918-281962)
chr6 (45-89)||(29274299-29274343)
chr6 (46-89)||(22742323-22742366)
chr6 (45-91)||(27595635-27595681)
chr6 (45-79)||(29269852-29269886)
chr6 (45-91)||(29940752-29940798)
chr6 (54-87)||(10154186-10154219)
chr6 (45-86)||(24836272-24836313)
chr6 (45-89)||(1402952-1402996)
chr6 (46-86)||(2027479-2027519)
chr6 (45-89)||(3204612-3204656)
chr6 (45-89)||(4006670-4006714)
chr6 (55-91)||(27615341-27615377)
[»] chr2 (18 HSPs)
chr2 (45-83)||(15171206-15171244)
chr2 (45-87)||(33192149-33192191)
chr2 (45-87)||(37053550-37053592)
chr2 (46-91)||(3458614-3458659)
chr2 (45-89)||(9478255-9478299)
chr2 (49-89)||(11513858-11513898)
chr2 (45-89)||(17952771-17952815)
chr2 (54-89)||(5043630-5043665)
chr2 (46-89)||(18962108-18962151)
chr2 (47-89)||(14209235-14209277)
chr2 (47-89)||(28803576-28803618)
chr2 (45-83)||(32098384-32098422)
chr2 (45-86)||(33256696-33256737)
chr2 (46-79)||(43299483-43299516)
chr2 (47-87)||(14666506-14666546)
chr2 (45-89)||(31740029-31740073)
chr2 (57-89)||(33944573-33944605)
chr2 (45-85)||(40837502-40837542)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 1879185 - 1878947
Alignment:
Q  1 tatagcataaacacgtatcacatagtgcgtacctgaagtcagtgctataacagaagataaaataaagtcaaaatgttttcatataagctgtcttggaaag 100  Q
    |||||||||||||| ||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1879185 tatagcataaacacttatcacatagtgcttacctgaagtcatttctataacagaagataaaataaagtcaaaatgttttcatataagctgtcttggaaag 1879086  T
Q  101 tatgaaaataagctcaaaaagcctatggacatgtcataagccatttccatttactctctgaaacagtctttcaagtgcatgtgttttacttagcttgaag 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1879085 tatgaaaataagctgaaaaagcctatggacatgtcataagccatttccatttactctctgaaacagtctttcaagtgcatgtgttttacttagcttgaag 1878986  T
Q  201 tagaagttttcttcaaagacctctctctgcagtattatc 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1878985 tagaagttttcttcaaagacctctctctgcagtattatc 1878947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 15360850 - 15360894
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||    
T  15360850 ctataacaaaagataaaataaagtcaaactgttttcatataagct 15360894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 28689517 - 28689447
Alignment:
Q  74 tgttttcatataagctgtcttggaaag--tatgaaaataagctcaaaa-agcctatggacatgtcataagc 141  Q
    |||||||||||||||| ||||||||||  |||||||||||||| |||| | | ||||||||||||||||||    
T  28689517 tgttttcatataagctatcttggaaagcttatgaaaataagctgaaaacaacttatggacatgtcataagc 28689447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 46499968 - 46499860
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagctgtcttggaaag--tatgaaaataagctcaaaa-agcctatggacatgtcataagc 141  Q
    |||||| | ||||||||||||||||||| |||||| || |||||| || |||| ||  |||||||||||| | |||| ||  || |||||||||||||||    
T  46499968 ctataagaaaagataaaataaagtcaaattgtttttatttaagctttcatggagagcttatgaaaataaggttaaaacagtttagggacatgtcataagc 46499869  T
Q  142 catttccat 150  Q
    | |||||||    
T  46499868 cgtttccat 46499860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 25006148 - 25006104
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||||| | ||||||||||||||| ||||||||||||||||    
T  25006148 ctataacagacggtaaaataaagtcaaattgttttcatataagct 25006104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 27738290 - 27738250
Alignment:
Q  49 aacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||| ||||||||||||||||||| ||||||||||||||||    
T  27738290 aacaaaagataaaataaagtcaaattgttttcatataagct 27738250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 44032113 - 44032069
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||| ||| ||||||||||||||| ||||||||||||||||    
T  44032113 ctataacaaaagctaaaataaagtcaaattgttttcatataagct 44032069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 49517026 - 49517070
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||| ||||||||||||||||||| ||||||||| ||||||    
T  49517026 ctataacaaaagataaaataaagtcaaattgttttcatttaagct 49517070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 4200186 - 4200229
Alignment:
Q  46 tataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    ||||||| ||||||||||||||||||  ||||||||||||||||    
T  4200186 tataacaaaagataaaataaagtcaagttgttttcatataagct 4200229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 86
Target Start/End: Complemental strand, 5941559 - 5941520
Alignment:
Q  47 ataacagaagataaaataaagtcaaaatgttttcatataa 86  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  5941559 ataacagatgataaaataaagtcaaactgttttcatataa 5941520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 89
Target Start/End: Complemental strand, 18420959 - 18420924
Alignment:
Q  54 aagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||||||||||||||||||| |||||||||||    
T  18420959 aagataaaataaagtcaaaatgttctcatataagct 18420924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 89
Target Start/End: Complemental strand, 28467420 - 28467377
Alignment:
Q  46 tataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||    
T  28467420 tataacaaaagataaaataaagtcaaattattttcatataagct 28467377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 30371105 - 30371148
Alignment:
Q  46 tataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    ||||||| ||||||||||||| ||||| ||||||||||||||||    
T  30371105 tataacaaaagataaaataaactcaaattgttttcatataagct 30371148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 14737819 - 14737781
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcata 83  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  14737819 ctataacaaaagataaaataaagtcaaattgttttcata 14737781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 28788641 - 28788608
Alignment:
Q  56 gataaaataaagtcaaaatgttttcatataagct 89  Q
    ||||||||||||||||| ||||||||||||||||    
T  28788641 gataaaataaagtcaaactgttttcatataagct 28788608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 2773716 - 2773672
Alignment:
Q  47 ataacagaagataaaataaagtcaaaatgttttcatataagctgt 91  Q
    |||||||||||||||||||  ||||| |||||| |||||||||||    
T  2773716 ataacagaagataaaataatttcaaattgttttaatataagctgt 2773672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 34179986 - 34179942
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||| ||||||||||||||||||| |||||| || ||||||    
T  34179986 ctataacaaaagataaaataaagtcaaattgttttaatctaagct 34179942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 36151617 - 36151577
Alignment:
Q  47 ataacagaagataaaataaagtcaaaatgttttcatataag 87  Q
    |||||| ||||||||||||||||||| ||||||| ||||||    
T  36151617 ataacaaaagataaaataaagtcaaattgttttcgtataag 36151577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 38867947 - 38867907
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatata 85  Q
    ||||| || ||||| ||||||||||||||||||||||||||    
T  38867947 ctataccaaaagattaaataaagtcaaaatgttttcatata 38867907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 44936704 - 44936660
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||| ||||||| ||||||||||| | ||||||||||||||    
T  44936704 ctataacaaaagataagataaagtcaaactattttcatataagct 44936660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 45999402 - 45999358
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||| ||||||| ||||||||||| || |||||||||||||    
T  45999402 ctataacaaaagataagataaagtcaaactgctttcatataagct 45999358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 49587030 - 49586978
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagctgtcttgga 97  Q
    |||||||| ||||||||||||||||||| |||||||||||||||| |||||||    
T  49587030 ctataacaaaagataaaataaagtcaaactgttttcatataagctatcttgga 49586978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 23793545 - 23793587
Alignment:
Q  46 tataacagaagataaaataaagtcaaaatgttttcatataagc 88  Q
    ||||||| |||||||||||||||||||||| ||||||||||||    
T  23793545 tataacaaaagataaaataaagtcaaaatgatttcatataagc 23793587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 1395627 - 1395671
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||| ||||||||||||||||||| | ||||||||||||||    
T  1395627 ctataacaaaagataaaataaagtcaaattattttcatataagct 1395671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 91
Target Start/End: Original strand, 21367824 - 21367856
Alignment:
Q  59 aaaataaagtcaaaatgttttcatataagctgt 91  Q
    |||||||||||||||||||||||||||||||||    
T  21367824 aaaataaagtcaaaatgttttcatataagctgt 21367856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 10101590 - 10101548
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataag 87  Q
    |||||||| ||||||||||||||| ||| ||||||||||||||    
T  10101590 ctataacaaaagataaaataaagttaaattgttttcatataag 10101548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 10212515 - 10212473
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataag 87  Q
    |||||||| ||||||||||||||| ||| ||||||||||||||    
T  10212515 ctataacaaaagataaaataaagttaaattgttttcatataag 10212473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 89
Target Start/End: Original strand, 23785217 - 23785255
Alignment:
Q  51 cagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  23785217 cagaagataaaataaagtcaaactgtattcatataagct 23785255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 34954039 - 34954085
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagctgt 91  Q
    |||||||| ||||||||||||||||||  ||||||||||||| ||||    
T  34954039 ctataacacaagataaaataaagtcaagctgttttcatataatctgt 34954085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 42808935 - 42808981
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagctgt 91  Q
    |||||||| ||||||||||||||| ||| |||||| |||||||||||    
T  42808935 ctataacaaaagataaaataaagttaaattgtttttatataagctgt 42808981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 42809257 - 42809303
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagctgt 91  Q
    |||||||| ||||||||||| ||| ||| ||||||||||||||||||    
T  42809257 ctataacaaaagataaaatatagttaaattgttttcatataagctgt 42809303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 15304461 - 15304420
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataa 86  Q
    |||||||| ||||||||||||||| ||| |||||||||||||    
T  15304461 ctataacaaaagataaaataaagttaaattgttttcatataa 15304420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 22232783 - 22232824
Alignment:
Q  46 tataacagaagataaaataaagtcaaaatgttttcatataag 87  Q
    ||||||| | ||||||||||||||||| ||||||||||||||    
T  22232783 tataacaaatgataaaataaagtcaaactgttttcatataag 22232824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 905084 - 905040
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||| ||||||||||||||||||  ||||| ||||||||||    
T  905084 ctataacaaaagataaaataaagtcaatttgtttgcatataagct 905040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 8007809 - 8007765
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||| |||||||| |||||||||| |||| |||||||||||    
T  8007809 ctataacaaaagataaagtaaagtcaaactgttatcatataagct 8007765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 20192719 - 20192679
Alignment:
Q  46 tataacagaagataaaataaagtcaaaatgttttcatataa 86  Q
    ||||||| |||||||||||||||||||  ||||||||||||    
T  20192719 tataacaaaagataaaataaagtcaaacagttttcatataa 20192679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 24887397 - 24887353
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    ||||||||  |||||||||||||||||| ||| ||||||||||||    
T  24887397 ctataacaatagataaaataaagtcaaactgtattcatataagct 24887353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 26990690 - 26990730
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatata 85  Q
    |||||||| ||||||||||||||||||| | ||||||||||    
T  26990690 ctataacaaaagataaaataaagtcaaattcttttcatata 26990730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 33965604 - 33965564
Alignment:
Q  46 tataacagaagataaaataaagtcaaaatgttttcatataa 86  Q
    ||||||| ||| ||||||||||||||| |||||||||||||    
T  33965604 tataacaaaaggtaaaataaagtcaaactgttttcatataa 33965564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 38462237 - 38462277
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatata 85  Q
    ||||| || ||||||||||||||||||| ||||||||||||    
T  38462237 ctataccaaaagataaaataaagtcaaactgttttcatata 38462277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 40122864 - 40122828
Alignment:
Q  47 ataacagaagataaaataaagtcaaaatgttttcata 83  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  40122864 ataacaaaagataaaataaagtcaaactgttttcata 40122828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 48384537 - 48384493
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||||||||||| ||||||||||| ||||| ||| ||||||    
T  48384537 ctataacagaagataacataaagtcaaattgtttccatttaagct 48384493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 89
Target Start/End: Complemental strand, 583886 - 583843
Alignment:
Q  46 tataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  583886 tataacagaagataaaataaagtcaaactgttttcatataagct 583843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 14295462 - 14295506
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||    
T  14295462 ctataacaaaagataaaataaagtcaaactgttttcatataagct 14295506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 28586880 - 28586839
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataa 86  Q
    |||||||| ||||||||||||||||||| |||||||||||||    
T  28586880 ctataacaaaagataaaataaagtcaaactgttttcatataa 28586839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 119
Target Start/End: Complemental strand, 29117044 - 29116968
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagctgtcttggaaag--tatgaaaataagctcaaaa 119  Q
    |||||||| ||||||||||||||||||| ||||||| |||||||| || || ||||  |||| ||||||||| ||||    
T  29117044 ctataacaaaagataaaataaagtcaaactgttttcgtataagctatcctgaaaagcttatgcaaataagctgaaaa 29116968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 35135776 - 35135732
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||| ||||||||||||||||||| | ||||||||||||||    
T  35135776 ctataacaaaagataaaataaagtcaaactattttcatataagct 35135732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 89
Target Start/End: Complemental strand, 32059694 - 32059659
Alignment:
Q  54 aagataaaataaagtcaaaatgttttcatataagct 89  Q
    ||||||||||||||||||| ||||||||||||||||    
T  32059694 aagataaaataaagtcaaactgttttcatataagct 32059659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 985591 - 985633
Alignment:
Q  47 ataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||| ||||||||||||||||||| |||||||| |||||||    
T  985591 ataacaaaagataaaataaagtcaaactgttttcacataagct 985633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 37063188 - 37063146
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataag 87  Q
    |||||||| ||||||||||||||||||| | ||||||||||||    
T  37063188 ctataacaaaagataaaataaagtcaaactattttcatataag 37063146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 10303757 - 10303794
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcat 82  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  10303757 ctataacaaaagataaaataaagtcaaattgttttcat 10303794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 11615465 - 11615510
Alignment:
Q  46 tataacagaagataaaataaagtcaaaatgttttcatataagctgt 91  Q
    ||||||| ||||||||||||||||||| ||||| | ||||||||||    
T  11615465 tataacaaaagataaaataaagtcaaattgtttacgtataagctgt 11615510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 12595854 - 12595813
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataa 86  Q
    |||||||| ||||||||||||||| ||| |||||||||||||    
T  12595854 ctataacaaaagataaaataaagttaaattgttttcatataa 12595813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 36639479 - 36639516
Alignment:
Q  46 tataacagaagataaaataaagtcaaaatgttttcata 83  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  36639479 tataacaaaagataaaataaaatcaaaatgttttcata 36639516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 41277455 - 41277422
Alignment:
Q  54 aagataaaataaagtcaaaatgttttcatataag 87  Q
    ||||||||||||||||||| ||||||||||||||    
T  41277455 aagataaaataaagtcaaactgttttcatataag 41277422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 912763 - 912719
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaa-tgttttcatataagc 88  Q
    |||||||| || ||||||||||||||||| |||||||||||||||    
T  912763 ctataacacaatataaaataaagtcaaaattgttttcatataagc 912719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 17756840 - 17756808
Alignment:
Q  48 taacagaagataaaataaagtcaaaatgttttc 80  Q
    ||||||||||||||||||||||||| |||||||    
T  17756840 taacagaagataaaataaagtcaaattgttttc 17756808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 19177439 - 19177479
Alignment:
Q  49 aacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    ||||||||||||||| ||||| || ||||||||||||||||    
T  19177439 aacagaagataaaattaagtctaactgttttcatataagct 19177479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 32969231 - 32969187
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||| ||||||||||||||||||| | |||| |||||||||    
T  32969231 ctataacaaaagataaaataaagtcaaattatttttatataagct 32969187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 27532 - 27573
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataa 86  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  27532 ctataacagaagataaaataaagtcaaattgttttcatataa 27573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 141
Target Start/End: Original strand, 20672729 - 20672825
Alignment:
Q  46 tataacagaagataaaataaagtcaaaatgttttcatataagctgtcttggaaag--tatgaaaataagctcaaaa-agcctatggacatgtcataagc 141  Q
    ||||||| ||||||||||||||||||| ||||||  |||||||| || |||| ||  |||||||||||||| |||| ||| |||| |||||||||||||    
T  20672729 tataacaaaagataaaataaagtcaaactgtttt--tataagctatcctggagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagc 20672825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 92
Target Start/End: Original strand, 25867042 - 25867089
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagctgtc 92  Q
    |||||||| ||||| ||||||||||||||| |||||||||||||||||    
T  25867042 ctataacaaaagatgaaataaagtcaaaatattttcatataagctgtc 25867089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 29262988 - 29262942
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagctgt 91  Q
    |||||| ||||||||||||||||||||| | ||||||||||||||||    
T  29262988 ctataatagaagataaaataaagtcaaattattttcatataagctgt 29262942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 89
Target Start/End: Complemental strand, 42237535 - 42237492
Alignment:
Q  46 tataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    ||||||| ||||||||||||||| ||| ||||||||||||||||    
T  42237535 tataacaaaagataaaataaagttaaattgttttcatataagct 42237492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 92
Target Start/End: Original strand, 44348443 - 44348490
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagctgtc 92  Q
    |||||||| |||||  |||||||||||||| |||||||||||||||||    
T  44348443 ctataacaaaagatgtaataaagtcaaaatattttcatataagctgtc 44348490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 2100761 - 2100803
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataag 87  Q
    ||||| || ||||||||||||||||||||| ||||||||||||    
T  2100761 ctatagcaaaagataaaataaagtcaaaatattttcatataag 2100803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 29699210 - 29699252
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataag 87  Q
    |||||||| |||||||||||||||||||||||| |||| ||||    
T  29699210 ctataacaaaagataaaataaagtcaaaatgttgtcatctaag 29699252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 787217 - 787176
Alignment:
Q  48 taacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    ||||| ||||||||||||||||||| |||| |||||||||||    
T  787217 taacataagataaaataaagtcaaattgttatcatataagct 787176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 7026688 - 7026729
Alignment:
Q  46 tataacagaagataaaataaagtcaaaatgttttcatataag 87  Q
    ||||||| ||||||||||||||| ||| ||||||||||||||    
T  7026688 tataacaaaagataaaataaagtaaaattgttttcatataag 7026729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 13561426 - 13561385
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataa 86  Q
    ||||||||||| || ||||||||||||| |||||||||||||    
T  13561426 ctataacagaaaattaaataaagtcaaattgttttcatataa 13561385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 3537145 - 3537101
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    ||||| || ||||||||||||||||||| ||||||| ||||||||    
T  3537145 ctatagcaaaagataaaataaagtcaaattgttttcgtataagct 3537101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 10437841 - 10437884
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||| ||||||||||||||||||| |||||| |||||||||    
T  10437841 ctataacaaaagataaaataaagtcaaactgtttt-atataagct 10437884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 29374001 - 29373957
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||    
T  29374001 ctataacagaagataaaataatgtcaaaatgtattcatataagct 29373957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 53626732 - 53626776
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||    
T  53626732 ctataacaaaagataaaataaattcaaaatgttttcatataagct 53626776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 41701554 - 41701509
Alignment:
Q  46 tataacagaagataaaataaagtcaaaatgttttcatataagctgt 91  Q
    ||||||| |||||||||||||||||||  |||||||||||||||||    
T  41701554 tataacaaaagataaaataaagtcaaatcgttttcatataagctgt 41701509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 4071838 - 4071882
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||| ||||||||||||||||||| | ||||||||||||||    
T  4071838 ctataacaaaagataaaataaagtcaaattattttcatataagct 4071882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 30024656 - 30024700
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||| ||||||||||||||| ||| ||||||||||||||||    
T  30024656 ctataacaaaagataaaataaagtaaaattgttttcatataagct 30024700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 54325151 - 54325107
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||| ||| ||||||||||||||||||| ||||||||||||||||    
T  54325151 ctattacaaaagataaaataaagtcaaactgttttcatataagct 54325107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 54327563 - 54327519
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||| ||||||||| ||||||||| ||||||||||||||||    
T  54327563 ctataacaaaagataaaacaaagtcaaactgttttcatataagct 54327519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 89
Target Start/End: Complemental strand, 13949949 - 13949914
Alignment:
Q  54 aagataaaataaagtcaaaatgttttcatataagct 89  Q
    ||||||||||||||||||| ||||||||||||||||    
T  13949949 aagataaaataaagtcaaattgttttcatataagct 13949914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 89
Target Start/End: Complemental strand, 25434565 - 25434530
Alignment:
Q  54 aagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||||||||||||| |||||||||||||||||    
T  25434565 aagataaaataaagtcaatatgttttcatataagct 25434530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 22684630 - 22684584
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagctgt 91  Q
    |||||||| | | ||||||||||||||| ||||||||||||||||||    
T  22684630 ctataacaaacggtaaaataaagtcaaattgttttcatataagctgt 22684584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 47800586 - 47800632
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagctgt 91  Q
    |||||||| ||||||||||||||| ||||||||||  ||||||||||    
T  47800586 ctataacaaaagataaaataaagttaaaatgtttttgtataagctgt 47800632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 10192241 - 10192282
Alignment:
Q  46 tataacagaagataaaataaagtcaaaatgttttcatataag 87  Q
    ||||||| |||||| |||||||||||| ||||||||||||||    
T  10192241 tataacaaaagatagaataaagtcaaattgttttcatataag 10192282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 5131345 - 5131309
Alignment:
Q  46 tataacagaagataaaataaagtcaaaatgttttcat 82  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  5131345 tataacaaaagataaaataaagttaaaatgttttcat 5131309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 8130130 - 8130174
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||| ||||||| ||||||||||| | ||||||||||||||    
T  8130130 ctataacaaaagataacataaagtcaaattattttcatataagct 8130174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 8469489 - 8469445
Alignment:
Q  47 ataacagaagataaaataaagtcaaaatgttttcatataagctgt 91  Q
    ||||||||||||||||||| |||||| || ||||||||| |||||    
T  8469489 ataacagaagataaaataatgtcaaagtgctttcatataggctgt 8469445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 20936116 - 20936072
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||| ||||||||||||||||||| | ||||||| ||||||    
T  20936116 ctataacaaaagataaaataaagtcaaactattttcatgtaagct 20936072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 24929449 - 24929493
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||| |||||||||||||||| || |||||||||| |||||    
T  24929449 ctataacaaaagataaaataaagtctaactgttttcataaaagct 24929493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 30338706 - 30338662
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||| |||||| |||||||| ||| ||||||||||||||||    
T  30338706 ctataacaaaagatagaataaagttaaactgttttcatataagct 30338662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 31038971 - 31038939
Alignment:
Q  55 agataaaataaagtcaaaatgttttcatataag 87  Q
    |||||||||||||||||| ||||||||||||||    
T  31038971 agataaaataaagtcaaattgttttcatataag 31038939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 42321992 - 42321952
Alignment:
Q  46 tataacagaagataaaataaagtcaaaatgttttcatataa 86  Q
    ||||||| | ||||||||||||||||| |||||||||||||    
T  42321992 tataacaaatgataaaataaagtcaaattgttttcatataa 42321952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 44007986 - 44007942
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    ||||| || |||||||||||||| |||| ||||||||||||||||    
T  44007986 ctataccaaaagataaaataaagacaaattgttttcatataagct 44007942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 44119276 - 44119232
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    ||||| || ||||||||| |||||||| |||||||||||||||||    
T  44119276 ctatagcaaaagataaaacaaagtcaatatgttttcatataagct 44119232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 49219095 - 49219139
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||| || |||||||||||||||| | ||||||||||||||    
T  49219095 ctataacaaaatataaaataaagtcaaattattttcatataagct 49219139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 1417221 - 1417263
Alignment:
Q  46 tataacagaagataaaataaagtcaaaatgttttcatataagc 88  Q
    ||||||| ||||||||||||||||||| |||||||||||||||    
T  1417221 tataacaaaagataaaataaagtcaaattgttttcatataagc 1417263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 5006623 - 5006581
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataag 87  Q
    |||||||| ||||||||||||||||||| ||||||||||||||    
T  5006623 ctataacaaaagataaaataaagtcaaactgttttcatataag 5006581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 35536063 - 35536105
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataag 87  Q
    |||||||| ||||||||||||||||||| ||||||||||||||    
T  35536063 ctataacataagataaaataaagtcaaattgttttcatataag 35536105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 39591581 - 39591539
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataag 87  Q
    |||||||| ||||||||||||||||||| ||||||||||||||    
T  39591581 ctataacaaaagataaaataaagtcaaattgttttcatataag 39591539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 44239093 - 44239056
Alignment:
Q  46 tataacagaagataaaataaagtcaaaatgttttcata 83  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  44239093 tataacaaaagataaaataaagtcaaaatgttttcata 44239056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 23918913 - 23918957
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||| ||| ||||||||||||||||||| ||||||||||||||||    
T  23918913 ctattacaaaagataaaataaagtcaaattgttttcatataagct 23918957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 91
Target Start/End: Complemental strand, 27121689 - 27121654
Alignment:
Q  56 gataaaataaagtcaaaatgttttcatataagctgt 91  Q
    ||||||||||||||||| ||||||||||||||||||    
T  27121689 gataaaataaagtcaaattgttttcatataagctgt 27121654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 84
Target Start/End: Original strand, 29363478 - 29363513
Alignment:
Q  49 aacagaagataaaataaagtcaaaatgttttcatat 84  Q
    |||||||||||||||||||||||| |||||||||||    
T  29363478 aacagaagataaaataaagtcaaactgttttcatat 29363513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 89
Target Start/End: Original strand, 31002726 - 31002761
Alignment:
Q  54 aagataaaataaagtcaaaatgttttcatataagct 89  Q
    ||||||||||||||||||||| ||||||||||||||    
T  31002726 aagataaaataaagtcaaaatattttcatataagct 31002761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 46825054 - 46825097
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagc 88  Q
    |||||| | ||||||||||||||||||| |||||||||||||||    
T  46825054 ctataaaaaaagataaaataaagtcaaattgttttcatataagc 46825097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 1418387 - 1418429
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataag 87  Q
    |||||||| |||||| ||||||||||| |||||||||||||||    
T  1418387 ctataacaaaagatataataaagtcaatatgttttcatataag 1418429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 30456560 - 30456522
Alignment:
Q  49 aacagaagataaaataaagtcaaaatgttttcatataag 87  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  30456560 aacaaaagataaaataaagtcaaattgttttcatataag 30456522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 9527204 - 9527163
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataa 86  Q
    |||||||| |||||| |||||||||||| |||||||||||||    
T  9527204 ctataacaaaagatataataaagtcaaactgttttcatataa 9527163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 43318642 - 43318597
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagctg 90  Q
    |||||||| | ||||||||||||||||| |||| ||||||||||||    
T  43318642 ctataacaaatgataaaataaagtcaaattgttatcatataagctg 43318597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 47046211 - 47046178
Alignment:
Q  56 gataaaataaagtcaaaatgttttcatataagct 89  Q
    ||||||||||||||||| ||||||||||||||||    
T  47046211 gataaaataaagtcaaattgttttcatataagct 47046178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 12835047 - 12835007
Alignment:
Q  49 aacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||| ||||||||||||||||||| ||||||||||| ||||    
T  12835047 aacaaaagataaaataaagtcaaattgttttcatattagct 12835007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 17989136 - 17989096
Alignment:
Q  46 tataacagaagataaaataaagtcaaaatgttttcatataa 86  Q
    ||||||| || |||||||||||||||| |||||||||||||    
T  17989136 tataacaaaatataaaataaagtcaaactgttttcatataa 17989096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 21247489 - 21247529
Alignment:
Q  49 aacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||| |||||| ||||||||||||||| |||||||||||||    
T  21247489 aacaaaagatacaataaagtcaaaatggtttcatataagct 21247529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 33894579 - 33894622
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||| |||||||||||| |||||| ||||||||||||||||    
T  33894579 ctataacaaaagataaaataa-gtcaaactgttttcatataagct 33894622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 45777284 - 45777244
Alignment:
Q  46 tataacagaagataaaataaagtcaaaatgttttcatataa 86  Q
    ||||||| |||||||||| |||||||| |||||||||||||    
T  45777284 tataacaaaagataaaattaagtcaaactgttttcatataa 45777244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 7713983 - 7714025
Alignment:
Q  47 ataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||| ||||||||||||||||||| ||||||||||||||||    
T  7713983 ataacaaaagataaaataaagtcaaattgttttcatataagct 7714025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 27693553 - 27693507
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagctgt 91  Q
    |||||| ||||||||||||||||||||| | ||||||||||||||||    
T  27693553 ctataatagaagataaaataaagtcaaattattttcatataagctgt 27693507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 281962 - 281918
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||| ||||||||||||||||||  ||||||||||||||||    
T  281962 ctataacaaaagataaaataaagtcaacttgttttcatataagct 281918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 29274343 - 29274299
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    ||||| || ||||||||||||||||||| ||||||||||||||||    
T  29274343 ctatagcaaaagataaaataaagtcaaattgttttcatataagct 29274299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 22742323 - 22742366
Alignment:
Q  46 tataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    ||||||| | ||||||||||||||||| ||||||||||||||||    
T  22742323 tataacaaaggataaaataaagtcaaattgttttcatataagct 22742366  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 27595681 - 27595635
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagctgt 91  Q
    |||||| | ||||||||||||||||||| | ||||||||||||||||    
T  27595681 ctataataaaagataaaataaagtcaaattattttcatataagctgt 27595635  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 79
Target Start/End: Original strand, 29269852 - 29269886
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgtttt 79  Q
    |||||||||||||||||||||||||||| ||||||    
T  29269852 ctataacagaagataaaataaagtcaaattgtttt 29269886  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 29940752 - 29940798
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagctgt 91  Q
    |||||||| ||||||||||||||||||  ||||||||| ||||||||    
T  29940752 ctataacaaaagataaaataaagtcaatttgttttcatttaagctgt 29940798  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 10154186 - 10154219
Alignment:
Q  54 aagataaaataaagtcaaaatgttttcatataag 87  Q
    ||||||||||||||||||| ||||||||||||||    
T  10154186 aagataaaataaagtcaaactgttttcatataag 10154219  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 24836313 - 24836272
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataa 86  Q
    |||||||| ||||||||||||||||||| ||||||| |||||    
T  24836313 ctataacaaaagataaaataaagtcaaattgttttcgtataa 24836272  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 1402952 - 1402996
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||| ||||||||||||||| ||| | ||||||||||||||    
T  1402952 ctataacaaaagataaaataaagttaaactattttcatataagct 1402996  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 2027519 - 2027479
Alignment:
Q  46 tataacagaagataaaataaagtcaaaatgttttcatataa 86  Q
    ||||||| ||||||||||||||||||| | |||||||||||    
T  2027519 tataacaaaagataaaataaagtcaaactattttcatataa 2027479  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 3204656 - 3204612
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||| | |||||||||||||||| || ||||||||||||||||    
T  3204656 ctataataaaagataaaataaagtcgaactgttttcatataagct 3204612  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 4006670 - 4006714
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||| | ||||||||||||||||| |||||| |||||||||    
T  4006670 ctataacaaatgataaaataaagtcaaattgtttttatataagct 4006714  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 27615377 - 27615341
Alignment:
Q  55 agataaaataaagtcaaaatgttttcatataagctgt 91  Q
    |||||||||||||||||| | ||||||||||||||||    
T  27615377 agataaaataaagtcaaattcttttcatataagctgt 27615341  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 83
Target Start/End: Original strand, 15171206 - 15171244
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcata 83  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  15171206 ctataacagaagataaattaaagtcaaaatgttttcata 15171244  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 33192149 - 33192191
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataag 87  Q
    |||||||| ||||||||||||||||||| ||||||||||||||    
T  33192149 ctataacataagataaaataaagtcaaactgttttcatataag 33192191  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 37053550 - 37053592
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataag 87  Q
    ||||||||||| |||||||||||||||| ||||||||||||||    
T  37053550 ctataacagaaaataaaataaagtcaaactgttttcatataag 37053592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 3458614 - 3458659
Alignment:
Q  46 tataacagaagataaaataaagtcaaaatgttttcatataagctgt 91  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||    
T  3458614 tataacaaaagataaaataaagtcaaacttttttcatataagctgt 3458659  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 9478255 - 9478299
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    ||||||||| |||||||||||| ||||||| ||||||||||||||    
T  9478255 ctataacagtagataaaataaactcaaaatattttcatataagct 9478299  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 11513858 - 11513898
Alignment:
Q  49 aacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||| ||||||||||||||||||| ||||||||||||||||    
T  11513858 aacaaaagataaaataaagtcaaattgttttcatataagct 11513898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 17952815 - 17952771
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||| ||||||||||||||||||| | ||||||||||||||    
T  17952815 ctataacaaaagataaaataaagtcaaactattttcatataagct 17952771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 89
Target Start/End: Complemental strand, 5043665 - 5043630
Alignment:
Q  54 aagataaaataaagtcaaaatgttttcatataagct 89  Q
    ||||||||||||||||||| ||||||||||||||||    
T  5043665 aagataaaataaagtcaaactgttttcatataagct 5043630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 89
Target Start/End: Complemental strand, 18962151 - 18962108
Alignment:
Q  46 tataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    ||||||| ||||||||||||||| ||| ||||||||||||||||    
T  18962151 tataacaaaagataaaataaagttaaactgttttcatataagct 18962108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 14209235 - 14209277
Alignment:
Q  47 ataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||| ||||||||||||| ||||| ||||||||||||||||    
T  14209235 ataacaaaagataaaataaattcaaactgttttcatataagct 14209277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 28803618 - 28803576
Alignment:
Q  47 ataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||| ||||||||||||||||||| || |||||||||||||    
T  28803618 ataacaaaagataaaataaagtcaaactgatttcatataagct 28803576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 32098422 - 32098384
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcata 83  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  32098422 ctataacaaaagataaaataaagtcaaagtgttttcata 32098384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 33256696 - 33256737
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataa 86  Q
    ||||||||  |||||||||||||||||| |||||||||||||    
T  33256696 ctataacaatagataaaataaagtcaaactgttttcatataa 33256737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 43299516 - 43299483
Alignment:
Q  46 tataacagaagataaaataaagtcaaaatgtttt 79  Q
    ||||||||||||||||||||||||||| ||||||    
T  43299516 tataacagaagataaaataaagtcaaactgtttt 43299483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 14666506 - 14666546
Alignment:
Q  47 ataacagaagataaaataaagtcaaaatgttttcatataag 87  Q
    |||||| ||||||||||||||||||| || |||||||||||    
T  14666506 ataacaaaagataaaataaagtcaaactgatttcatataag 14666546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 31740073 - 31740029
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||  ||||||||||||||||||| | ||||||||||||||    
T  31740073 ctataactaaagataaaataaagtcaaactattttcatataagct 31740029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 33944573 - 33944605
Alignment:
Q  57 ataaaataaagtcaaaatgttttcatataagct 89  Q
    |||||||||||||||| ||||||||||||||||    
T  33944573 ataaaataaagtcaaattgttttcatataagct 33944605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 40837542 - 40837502
Alignment:
Q  45 ctataacagaagataaaataaagtcaaaatgttttcatata 85  Q
    |||||||| |||||||| |||||||||| ||||||||||||    
T  40837542 ctataacaaaagataaattaaagtcaaattgttttcatata 40837502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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