View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15440_low_2 (Length: 458)
Name: NF15440_low_2
Description: NF15440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15440_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 1879182 - 1879622
Alignment:
| Q |
1 |
tataagctataagcacttaattaggcagtttgtccaaacaagattacaatgttttcaatagaaccatatcaaggcatactacagcataatatattagttt |
100 |
Q |
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| T |
1879182 |
tataagctataagcacttaattaagcagtttatccaaacaagattacaatgttttcaatagaatcatagcaaggcatactacagcataatatattagttt |
1879281 |
T |
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| Q |
101 |
aatgttgtacataccgatgttgcatgcgctagacttctcccttcagttatgtcaaacgggttcatgtattttggtgcagttggaagtgctggaggaggct |
200 |
Q |
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| T |
1879282 |
aatgttgtacataccgatgttgcatgcgctagacttctcccttcagttatgtcaaacgggttcatgtattttggtgcagttggaagtgctggaggaggct |
1879381 |
T |
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| Q |
201 |
gcaaatgaaacatcatatcattcaatcagcattgatatcaaaaccaagaaaaactaaaattaaacttgatagagttttattttgatacatcgtaagtgta |
300 |
Q |
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| T |
1879382 |
gcaaatgaaacatcatatcattcaatcagcattgatatcaaaaccaagaaaaactaaaactaaacttgatagagttttattttgatacatcgtaagtgta |
1879481 |
T |
|
| Q |
301 |
aaaagttttacactgaaaatgtatatgaagtcaaatgttctttataatctgacgaatgtgattgattgaaactgtaaaaaatatttacactaacggtgtg |
400 |
Q |
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| T |
1879482 |
aaaatttttacactgaaaatgtatatgaagtcaaatgttctttataatctgacgaatatgattgattgaaactgtaaaaaatatttacactaacggtgtg |
1879581 |
T |
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| Q |
401 |
tatgaattaaatcaaaattgataatgagatgcaaagagtgt |
441 |
Q |
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| T |
1879582 |
tatgaattaaatcaaaattgataatgagatgcaaagagtgt |
1879622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 413
Target Start/End: Complemental strand, 3259676 - 3259622
Alignment:
| Q |
359 |
tgattgattgaaactgtaaaaaatatttacactaacggtgtgtatgaattaaatc |
413 |
Q |
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| T |
3259676 |
tgattgattgaaagtgtaaaagctctttacactaatggtgtatatgaattaaatc |
3259622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 315
Target Start/End: Original strand, 10231796 - 10231842
Alignment:
| Q |
269 |
atagagttttattttgatacatcgtaagtgtaaaaagttttacactg |
315 |
Q |
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| T |
10231796 |
atagagtttaattttgatatattgtcagtgtaaaaagttttacactg |
10231842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 24547667 - 24547711
Alignment:
| Q |
271 |
agagttttattttgatacatcgtaagtgtaaaaagttttacactg |
315 |
Q |
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| T |
24547667 |
agagtttgaatttgatacaccgtcagtgtaaaaagttttacactg |
24547711 |
T |
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